Bmaj013885.1
Basic Information
- Insect
- Bombylius major
- Gene Symbol
- -
- Assembly
- GCA_932526615.1
- Location
- CAKOBF010000330.1:28874-31589[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.015 0.89 10.3 0.7 1 23 217 240 217 240 0.94 2 12 0.042 2.5 8.9 2.3 1 23 246 269 246 269 0.90 3 12 0.85 50 4.8 7.2 1 23 276 298 276 299 0.96 4 12 4.4 2.6e+02 2.6 4.4 1 23 304 326 304 326 0.97 5 12 0.00027 0.016 15.8 5.5 2 23 333 354 332 354 0.96 6 12 0.0023 0.14 12.9 4.9 1 23 360 382 360 382 0.98 7 12 0.00026 0.015 15.9 2.9 1 23 387 408 387 408 0.97 8 12 0.00031 0.018 15.6 0.5 1 23 420 442 420 442 0.95 9 12 0.018 1.1 10.1 0.5 1 23 466 488 466 488 0.98 10 12 1.7e-05 0.001 19.6 1.6 1 23 494 517 494 517 0.98 11 12 0.00087 0.051 14.2 0.9 1 23 523 545 523 545 0.98 12 12 0.05 2.9 8.7 1.0 2 23 551 572 551 572 0.94
Sequence Information
- Coding Sequence
- ATGAACAGTTTGGAAATCGTTCATCATCCAATTAAATTTGAATTGGATGATACTTGTCGTACCTGTGGTGCGTTTGTCGTTGATGGAGTTTTGGTACCAATATTTGACCAAGTCGAAATCAGTACAAAAGATTCACTTTTTCAAATATCTGAAGAGCTCGAATTGATAAATATCAAGATTTCAGAAGATGACAATTTACCTCAACAGATCTGCATTAATTGCATAAACGAACTGAAAAATATTCATTTATTTCGTGATCAATGTAAACTTGCTCAGGATGTACTGAGAGAATATTTCATAAAAAGAGTTATCAAAACTAAAATCCAAATCGACGACACAATTTCAGAAGAACGTCAAATAATATCAGAAGACTTGATAGAATATGATAAGACTTTGGATGATGTCCCTGACAAACACAATATTATTATTGATGCATTTGAAAGTGATGACGAATCAAAATCCGCAGAAGAATCAGCATCCTTAGATGACCTTAGATTCGGCGAAGAATCTAATCCTGTTGATAAAGAAAGTATTGAAACTTCAAATAAAGGAAATCCAAAGGTTTTAAAATGCGACAATTGTTTACATTTTGCATATAAGGCAGAGGAATTAATTCATGGGAATGGTTGTACTACAATGCAAGATATATTTTCATGTTTTTATTGTGTGAAATCATATAAAGAAAAAAAAGAAGTTGTAAATCATATAATTGAAACACATCCAAAAGATCGTCCATATTTGTGTCCAGTTTGTAATGAAACATTTGACACAAATCAACACTGTCTTAAACATGTGAATGATGTTCACAAAGATGTTAAAAAGCCATATCAATGTGACAGTTGTTCTAGTTGTTTTTCACTTTTATATAGATTACGATCACATAAACGGCAACATCATCCAACTGGAAATTATGAATGCCGTATATGTCATGATAAACTGACTAATATACACAAATTTAAAATTCACCTTGATAGacataatgaagataaaccattaaaatgtaaatattgtccaaaatcttttatacacatgcatcacctccaagatcatgaggcaacacatactggtgaaagacgatatcattgtaaggaatgtgataaaacattcaaagGTACAGCATCATATTATCTTCATAAAAGAAAGCATAATAAAGAATTGCATTATTGTGAAATTTGTAAGAAAAATTTTTCAAGAGCAGCATTAAAAAAACACATGGAAAAACATAAAAACAATGAAGATTTGAAAGATGAAATTCGTTATCTGTGTTCAGTTTGCGGAAAAAATTATGCAACATTACTTAGTTTACAGAAACACCTTTATAGCCATAATCCTTCTTTAGTTCCTGATAAAACTTATAAAAACACAAAGAAAGGCACTACTGTAAAAATAAAAAAATATGATTGTTCTTTCTGCGATGAAAAACTATCTTCCTTATTAGGACTACAATATCATCTGAAAATGCATGACGAAAATCGAAAATATAAATGTGAATTTTGTGGTGTAGGTTATAAACGTAAAGAACATTTATCAGCACATATAAATTCAAAACATACAAAAACAAAAAAATATTATTGTTCATTTTGCAAAAAAGAGTTCGTATCATGGGCAGCGAGAAGTTCTCATCAAAAAGTTCACACGACAAGCAAAAACCGATGTTCATATTGCTCAAAAACATTTGAAAACGATGCTAGAGCAAGGCAACATGAGCGTTTACACACTAAAGAAAAATCTTTAATGTGCATCATTTGTAATATAGGATTCAGCACTTATATGAAATATAAATGTCATCAAGCAAAACAACATTCAGAAGAAGAACTAATGAAAGCAAAAGAAAAGATTCTAGCTGAGAATTTAAAATCATGTACAAAGGAAAGTGACAATATTGGAGAGGAAATGATTAATGATGATGGAGTGAACGACAGTTATAAGTTATTTGAAGTTTGA
- Protein Sequence
- MNSLEIVHHPIKFELDDTCRTCGAFVVDGVLVPIFDQVEISTKDSLFQISEELELINIKISEDDNLPQQICINCINELKNIHLFRDQCKLAQDVLREYFIKRVIKTKIQIDDTISEERQIISEDLIEYDKTLDDVPDKHNIIIDAFESDDESKSAEESASLDDLRFGEESNPVDKESIETSNKGNPKVLKCDNCLHFAYKAEELIHGNGCTTMQDIFSCFYCVKSYKEKKEVVNHIIETHPKDRPYLCPVCNETFDTNQHCLKHVNDVHKDVKKPYQCDSCSSCFSLLYRLRSHKRQHHPTGNYECRICHDKLTNIHKFKIHLDRHNEDKPLKCKYCPKSFIHMHHLQDHEATHTGERRYHCKECDKTFKGTASYYLHKRKHNKELHYCEICKKNFSRAALKKHMEKHKNNEDLKDEIRYLCSVCGKNYATLLSLQKHLYSHNPSLVPDKTYKNTKKGTTVKIKKYDCSFCDEKLSSLLGLQYHLKMHDENRKYKCEFCGVGYKRKEHLSAHINSKHTKTKKYYCSFCKKEFVSWAARSSHQKVHTTSKNRCSYCSKTFENDARARQHERLHTKEKSLMCIICNIGFSTYMKYKCHQAKQHSEEELMKAKEKILAENLKSCTKESDNIGEEMINDDGVNDSYKLFEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00235372;
- 90% Identity
- -
- 80% Identity
- -