Bmaj013884.1
Basic Information
- Insect
- Bombylius major
- Gene Symbol
- -
- Assembly
- GCA_932526615.1
- Location
- CAKOBF010000330.1:24813-27341[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.011 0.64 10.8 0.9 1 23 220 243 220 243 0.93 2 13 0.049 2.9 8.7 0.7 1 23 249 272 249 272 0.87 3 13 0.22 13 6.7 1.0 1 23 279 302 279 302 0.96 4 13 0.00012 0.0073 16.9 2.9 1 23 307 329 307 329 0.98 5 13 0.00015 0.0087 16.7 5.2 1 23 335 357 335 357 0.98 6 13 6.2e-06 0.00037 21.0 2.7 1 23 363 385 363 385 0.99 7 13 9.4e-05 0.0056 17.3 1.9 1 23 390 411 390 411 0.97 8 13 0.00012 0.007 17.0 2.5 3 23 425 445 423 445 0.95 9 13 0.00098 0.058 14.1 0.1 1 23 472 494 472 494 0.97 10 13 0.0001 0.0062 17.1 1.7 1 23 500 523 500 523 0.97 11 13 0.0099 0.59 10.9 1.7 1 23 529 551 529 551 0.97 12 13 0.00044 0.026 15.2 3.5 2 23 558 580 557 580 0.96 13 13 2.3 1.4e+02 3.5 0.7 1 23 586 608 586 608 0.92
Sequence Information
- Coding Sequence
- ATGAATGAAATTGAAATAATCCATCAAACAAACTTTAAAACGGATGATGCTTGTCGTACGTGTGGAGCATTTTACGATGATGGAGTTTTAATTCCAATATTTGATCAAGTTGAAATCAGTACAGGAAAATCGTTTTTTAGTATAGTTGAAGAGCTTCGATTAATGGATATAAAAATTTTTGAAGATGATAATTTACCTCAACAGATTTGTATTGATTGCATAAACGAACTGAAAAATATTCATTTATTTCGTAATAAATGTAAACTTGCACAGGATGCACTGAAAGATTATTTCATACAAAGCACTCTGAAAACTGAAATCGACATCACCGACGACACAATTTCAGAAGAACGTCAAATAAAATCAGAAGTCTTGATTAAAGAAGAGAATTTCTCAGATCATTTTTTTGATTCCAAAATAACTAATATAAATATAGATGTTCTTGATGAAAACGAAATTATTTCTGATGAATTTGAAAGTGATCAAGATTGGAAGGATATTGTGGAGATATCATCTGTTTTGGCTGACAAAAAAAAGTCTGAAATTTGTAATGATGGTGAAAATTCAAAGTTGATCGAATGCAATATTTGTTTAACTTTTGCATATAAAGCACAGAGAATGTGTCATGGAAATGGTTGTACACCAAAATCAAATATATTTACATGTTTCTATTGCACAAATGCATTCAATACGAAAGAAGAAATTGAAAATCATATTTACGAAACACATCCAGAAGATCGTCCATTTGTATGTCCAGTTTGTAATGAACCATTTAAAACTGATAAACTTTGTGAAACACATGTACAAAATGTTCATAGTGATATTGAACAACCATATCCTTGTAATGTTTGCTCTGGTGCTCATAAAAATTTAAGAAATCTACGAGCACATaaacgtttaactcatgatactggaaattatgaatgtggtatatgttttaaaaaatttacaaatctttacaaatttaattatcatattaaatcacataatgaagataagccattcaaatgtcaatattgtccaaaatcttttatgcaaacacatcatcttagagatcatgaagcaacacatactggtgaaaaacgttatcgttgcgaaaaatgtgataaatcatttaaaggtacctcatcttattttattcatatgagacaacataagaaaaatctacattattgtgatatatgtaaaagagTATTTTCAAGAGCAGCATTGAAAAGACACATGGAAAGACATAAAGACGATGGAACTTTCGAAGAAGAAATTACACATTTGTGTTCATTCTGTGGGAAAGGATTCCGATCTAAAGCATCTTTAAATACTCATAGTAAAATCCATAATTTTGGTAGTACTCAAAAAACATCCAACAATAGTGTTCATTCTAATGATGAAGATAAAATTAAGATTATTAAAAATTATGATTGTGCTTTTTGTCCTGAAACATTTGCTTCATTATTAGGATTACAAAATCATCTAAAAATGCATGATGAAAATCGTAAATTCAAATGTGAATTCTGTGGTGTAGGTTATAATCGTAGTGAACATTTATCATCACATATAAATTCGAAACACACAAAAACTAAAAAATATTATTGTTCATTTTGCAATAAAGTGTTCGTATCTATGACAGCAAAAAATTCTCATGAAAAATCTCATAAGACAGACAAAGTCATTCATTGTAATTATTGTGACAAAACGTTTAGACGAAGTGCAAGAGCAAGAAATCATGAACGTACAAAACACACCAAAGAGAAACGTCACACATGCATAATTTGTAATGTTGGATTCTTAAGTTATGCCGCTTACAAAGCTCATCAAAATAAACACTCACCAGAAGAACTGCTACAAATGAAAGAAAAACTCCTGTTTGATAGTTTAAAAGCGGATACAAAGGAAACTGAAAATGTTCAAGACGAAGATATATTCTTAGAATTTATTGTAAATGAGGTTTAA
- Protein Sequence
- MNEIEIIHQTNFKTDDACRTCGAFYDDGVLIPIFDQVEISTGKSFFSIVEELRLMDIKIFEDDNLPQQICIDCINELKNIHLFRNKCKLAQDALKDYFIQSTLKTEIDITDDTISEERQIKSEVLIKEENFSDHFFDSKITNINIDVLDENEIISDEFESDQDWKDIVEISSVLADKKKSEICNDGENSKLIECNICLTFAYKAQRMCHGNGCTPKSNIFTCFYCTNAFNTKEEIENHIYETHPEDRPFVCPVCNEPFKTDKLCETHVQNVHSDIEQPYPCNVCSGAHKNLRNLRAHKRLTHDTGNYECGICFKKFTNLYKFNYHIKSHNEDKPFKCQYCPKSFMQTHHLRDHEATHTGEKRYRCEKCDKSFKGTSSYFIHMRQHKKNLHYCDICKRVFSRAALKRHMERHKDDGTFEEEITHLCSFCGKGFRSKASLNTHSKIHNFGSTQKTSNNSVHSNDEDKIKIIKNYDCAFCPETFASLLGLQNHLKMHDENRKFKCEFCGVGYNRSEHLSSHINSKHTKTKKYYCSFCNKVFVSMTAKNSHEKSHKTDKVIHCNYCDKTFRRSARARNHERTKHTKEKRHTCIICNVGFLSYAAYKAHQNKHSPEELLQMKEKLLFDSLKADTKETENVQDEDIFLEFIVNEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -