Bmaj006529.1
Basic Information
- Insect
- Bombylius major
- Gene Symbol
- -
- Assembly
- GCA_932526615.1
- Location
- CAKOBF010000104.1:85307-91275[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.51 30 5.5 0.1 6 23 247 265 245 265 0.93 2 13 0.0032 0.19 12.4 1.0 3 23 344 365 342 365 0.94 3 13 0.0047 0.28 11.9 4.5 2 23 410 431 409 431 0.95 4 13 0.004 0.23 12.2 1.6 1 23 437 459 437 459 0.97 5 13 8e-05 0.0047 17.5 1.0 1 23 465 487 465 487 0.99 6 13 0.004 0.23 12.2 0.8 1 23 493 515 493 515 0.98 7 13 9.7e-06 0.00057 20.4 0.6 1 23 521 543 521 543 0.96 8 13 0.0037 0.22 12.2 3.5 1 23 548 570 548 570 0.97 9 13 0.0011 0.063 14.0 7.3 1 23 576 598 576 598 0.98 10 13 0.0022 0.13 13.0 3.4 1 23 604 627 604 627 0.97 11 13 9.2e-05 0.0054 17.3 2.5 1 23 633 655 633 655 0.98 12 13 0.041 2.4 9.0 4.5 2 23 662 683 661 684 0.93 13 13 0.039 2.3 9.0 0.2 2 20 695 713 694 715 0.92
Sequence Information
- Coding Sequence
- ATGCATGCGTCAAGAAGTGTAGCTGTTGGAATTCGTACAGCTTTAGAATTAGATATGTTTCCTAATGATTTGAAAATAAAGGCACTTTCAACAGCTAATTTTATTGATGCAATGAATACATTATTTGATATCTTAAATGGTAAACCACCTCTGAAAAAAGATTGCAAGAAAATAGAATATTTAGAAAAAATGCAAAATTATATTTCAAAAGTAAGTTTGGCAGAAAAAAAAGGTACTATTTATTGTTTTGATGGTCTTATTTTAACTTTAAAATCTATAATTAAAATTTCCAAATCATTACTTGAAAAATCAGACATTATAAAATTTATACATTTAAAAAAATTTAATCAAGATCCGGTAGAAAATTTTTTCTCTCGAATTAGAGCACGCAATCCAAATAAACGTAATCCATCATTATATGAATTTGGAGCTATATTTGCCAAAATTCTGTCTATTAAATTTATGTTTTCTTCAAAGTTTTCAAATTGTGAAAAAGATTCAGACGAACTTGTTGATATAGATTGGAATACAGTAGTGCAATTCAATAACTATGAAAATCAAGAACACATACCTCAAGCCGATTATGATGACATAGAAGAACTAGATGACAATTTTTTAGAGGAAACGCTCACAAAATATTCAAATGGCAAAGAAGGTGAAGAAGCTAGTTCAGAAAGTTATTCTTTTCGCAAAAGTATTAGTTTATCTTATACAGCCGTTAGATATTTTGCTGGTTTTTGTGGAAAATTATTCGATAACATTGAGACATTTATCACACATATTAAAGCATATCATCAAAGAGAAACATTGAATAAAACAAAAATTAAACCTGAACCACAATCTTCTGATGATGATAATGTTATTGAGGGTAATTTAAATGAACAAGAACAAAATGATGTTACACAATTATCATCAGATTTATTCACTGAAGAAGTTATTAAAGAAGAACCACAATTTGAAGATACTTCAAATACAAATTTAAAACAAAAAACAAAAATAAACAAACGTAAAAAACATGAAAAACATCTTTGTAAAATATGTAATGAAGAATTTTCTTTAGAAATCTCATTAAAATCACATATAAAATATGATCATGTACCAACAAATCCTTTTGTTGATATTACGGTATCATCATCACAAACTTTAAATGATTCATTAAATATAAGCCAAAATGATGAAACAAATAATGCTCAAGAAAATAATTCAACAAAAGATTCATCACATTTAAAATGTCGTTATTGTGGGAAAATATTTCGTAATCGTTCAACAAGATTTGAACATGAATGTTCACATACTGGTTATAAACCACATATTTGTCAAATATGTAGTAGTGGTTTTAGTAATTTAAATCGTCTTAAACAACATTTACGTATACATGAAAATAAAAGAGAATTTAAATGTGATATATGTGATGCAACATTTAATAGTAAAACATCATTAATATTTCATATACGTCGTCATAATGATGATAAACGTTATAAATGTGATTATTGTGAAAAATTATTTATAAGTAGTACAGCAAAAACAATACATGAAAGATTACATACTGGAGAAAAACCATATTTATGTAATGAATGCGGTAAAGGCTTTGTATCAAATAGTGGCTTACGTTCACATTCTAAAAAACATAATGGTGCAATACATAAATGTGATTATTGTGATAAGAAATTTATTACAATTTATTCAAAAAAAGAACATGAAAAAATTCATAAAAATGAAAAACCATATATATGTCATTATTGTGATAAAGCATTTATACATAAGCATAGTAGAAAAACACATGAACGTATACATACTGGTGATAAACCATATAAATGTATAAATTGCAATGAATGTTTTTATACAAGTGGTAAATTAAATGTACATATTAAACGTAAACATACTGGTGAAAAACCGTATAAATGTGAACATTGTAATAAAGGTTTTGTTACAAATTCTGATAAAAGAGAACATGAAAAAGTACATACACGTGATAAATCATTAAAATGTAATTATTGTGATAAAAAATTTTTTTCAATTAATTATAGATCAAGACATGAAAGATTACATCATAATGTTGATGATCAATCATCACAACAATGTATATGTGATGTATGTAATTTAGTTGTTACAAATGAAACAGAATTAAATAAACATAAAGAGATTTGTGGTAAAAACATTAAGGAAGAACCATTAGAAGATACATCACACGAAGATGAATGA
- Protein Sequence
- MHASRSVAVGIRTALELDMFPNDLKIKALSTANFIDAMNTLFDILNGKPPLKKDCKKIEYLEKMQNYISKVSLAEKKGTIYCFDGLILTLKSIIKISKSLLEKSDIIKFIHLKKFNQDPVENFFSRIRARNPNKRNPSLYEFGAIFAKILSIKFMFSSKFSNCEKDSDELVDIDWNTVVQFNNYENQEHIPQADYDDIEELDDNFLEETLTKYSNGKEGEEASSESYSFRKSISLSYTAVRYFAGFCGKLFDNIETFITHIKAYHQRETLNKTKIKPEPQSSDDDNVIEGNLNEQEQNDVTQLSSDLFTEEVIKEEPQFEDTSNTNLKQKTKINKRKKHEKHLCKICNEEFSLEISLKSHIKYDHVPTNPFVDITVSSSQTLNDSLNISQNDETNNAQENNSTKDSSHLKCRYCGKIFRNRSTRFEHECSHTGYKPHICQICSSGFSNLNRLKQHLRIHENKREFKCDICDATFNSKTSLIFHIRRHNDDKRYKCDYCEKLFISSTAKTIHERLHTGEKPYLCNECGKGFVSNSGLRSHSKKHNGAIHKCDYCDKKFITIYSKKEHEKIHKNEKPYICHYCDKAFIHKHSRKTHERIHTGDKPYKCINCNECFYTSGKLNVHIKRKHTGEKPYKCEHCNKGFVTNSDKREHEKVHTRDKSLKCNYCDKKFFSINYRSRHERLHHNVDDQSSQQCICDVCNLVVTNETELNKHKEICGKNIKEEPLEDTSHEDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -