Bmaj000653.1
Basic Information
- Insect
- Bombylius major
- Gene Symbol
- -
- Assembly
- GCA_932526615.1
- Location
- CAKOBF010000015.1:268751-272232[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0088 0.52 11.1 1.1 1 23 156 178 156 178 0.97 2 13 0.00042 0.025 15.2 1.5 2 23 184 206 183 206 0.94 3 13 9.7e-06 0.00057 20.4 1.3 2 23 217 239 216 239 0.93 4 13 9.7e-06 0.00057 20.4 7.4 3 23 458 478 456 478 0.96 5 13 0.00021 0.012 16.2 3.3 1 23 484 506 484 506 0.97 6 13 0.00017 0.0097 16.5 2.9 1 23 512 535 512 535 0.90 7 13 5.7e-05 0.0033 18.0 0.6 2 23 547 568 547 568 0.97 8 13 2.2e-06 0.00013 22.4 1.6 1 23 573 595 573 595 0.98 9 13 3.9e-06 0.00023 21.6 0.4 1 23 601 623 601 623 0.96 10 13 6.4e-06 0.00038 20.9 0.8 1 23 629 651 629 651 0.98 11 13 1.3e-06 7.4e-05 23.2 0.7 3 23 659 679 657 679 0.96 12 13 2.1e-06 0.00013 22.5 3.3 1 23 685 707 685 707 0.99 13 13 0.00023 0.014 16.0 3.9 1 23 712 735 712 735 0.97
Sequence Information
- Coding Sequence
- ATGACTGATGAAAATGATCAAAATATTGATGAAAATATATGCCGAACTTGTTTACGAACAAACACAGATGAATTGATTTTAATGTACCAAAGTGATGGTAACGAAATTTCAATATTTGATGATGATATCTCAATATCACAAATGATAACTGAATGTAGTGTTCATCCGGTTCAAGTTAATGATCCATTACCAAAAAAAATATGCTTAAAATGCATTGAAGATGTAAAAATTGCATATAATTTTCGTAAACAATCAGAATTATCGTATAAAACTTTAGTTGCATTTCTTCCAAAAaatcaaaacgttaatggtcaaaattatgataatgatgatgatgatgatgataatgatggagatagtgaagattcaatattgaaacaattaccaccattaccagaagaaccagaaattataatTGAAATGCCACCAACAGAAAAATGTATACAAACTGATGAGATAGCATTTTATCCATGTGAAAGATGTGAATTGAAATTTATGGATTATGAACAATTGAAGATACATCGTTTCAAACATAAAGGTGAAAAGAATAAATGTCGTGCTTGTCCGAAAACTTATAATCGTATATCACATTTAAAAAGGCATATTGCTGTAAACCATCCAGAAATTGGTTTACAAGCCTACAAAACAGAATGTAAAATATGTAATAAAAGTTTTACAAGACCAGAACGTTTAAAAAAACATTTAGAACTAAAACATAGTGGAAAAATAAAAAAAACAACAACGAAAAATCGAAATTCTGAAGGAAAAAAAGTTTCTGATAAAAGTAAAAAATCAGATGAATTCCATTGTAAAAAATGTAAGGAATATTTTGAAAATGACACAACATACAAGGATCACAAGTGTGAGGGAAATGCTGATGATGATAATGTATCAAATAATGAGATATTAATGGAAATAGAAGTTCCAATTGTTGAAACAGTTTATAATTTAAATGTTCAAGAAGAATATGATACGATAATGGACAGCAGTTTTAATGATGACGGTAATTATTCAGCAAGCGACGAAGAAGATGGAAAATCACTTGCACAATTAAAAGCTGAAGTAAAAAAACTTAAATCATCTGAACAACAGTCTTCTTCAAATTCACAATCTCAACCAAAAACAAAAAATATTAAAACTGAATTATCAGAAAATCCAATTGATTCACAACCAACACAAACTGAAAATTCTGatagtattaattcaaaattagaaacaacaacaacaacagcaacaaataataaaacaacaacaacaacagcaacaaataataaaacaacaacaacaacagcaacaaataataaaacaacaacaacagcaacaacaaatgataataaaaaattaggtagaacaacaaaaaaaaTTCATTTatgtgaaaaatgtaataagacttttacacgttcaacacatttacgacgtcatcaattaacacattctgatcatagaccattttcatgtgatgtttgtcataaaggtttcacacgtatcgatcatttaaatattcataaacttaatcattctgatacaaaaccatttacatgtgatatatgtaaacgtggttttacacgttttgaacatttaacacgtcataaagatgcaagacataatactgaacgtttaccaaatcaaaaaactgaatattgtgatatatgtaaacgttatttttcatcagctagatatttacaagtacatattaaatcacatacagatcgtcgttttacatgtaaatattgtgatacaatatttgatacaaagtctcaattaacatcacatgttaaaatacatacaaatgataaaccatttttatgttctgaatgtggtttacgttttgtacgtaatgattatttagttatacatatgagacgtcataaaggtgaaaaaccatataaatgtaaattttgtgataaaggttttccaagagcaactgatctaacagtacatgaaagatatcatactggtgaaaaaacacatttatgtacaatttgtggtaaaggttttcaacgtgcatataatttattagttcatatgagagtacatactggtgaacgtccatatcaatgtccacattgttcaaaatgttttgcacaaggtaatgatttaaaagcacatattagacgacatactggtgaaagatttaaatgtgatatgtgtaatcatggttttatacaagcatatcatttaacacaacataaacgtaatgcacaTGGTATTGATGCACAATCACATATACGTCGTGTTGAAAAATTTGTAACACCATTAGAACAACAAAAACAAGTTGAAGCATTACAAAATaaaatgaaagaaacaacaacaacaacatcatcaacaacaacaacatcaacaactgcaacaacagcttcagaaacaaaagttatttctacttcaacaagaaattcaAAAAAATCTAAAAATAATCAAAAATCAAAGAAAAATATCATCACAACTGATGTTTCTAAAATTATAAATAAATCATCAATTTCTGAACAAGAAAATGAAAAATTTTCTGAAATTCAAACACAAAATGTCTTACAGATTGTAAAAATATCAAATGAGAGTAATGAAAGCCTTCTTGAACAAGATAGTATTAAAATTGAAGAGACTCAATTGCAAACTGTGCAGGCACAAGAGATTGATGTAACAGACGATGATAATGAATTATTACATACAACCAAACAATATTTAGTTGTTGGTGGTTCATCATTTACACAAATTCCATCAAATTCATCAATTTTTCTAACTGAAATCGATTCTGCTAAAGTTAAATATGAGACTTATGATTAA
- Protein Sequence
- MTDENDQNIDENICRTCLRTNTDELILMYQSDGNEISIFDDDISISQMITECSVHPVQVNDPLPKKICLKCIEDVKIAYNFRKQSELSYKTLVAFLPKNQNVNGQNYDNDDDDDDNDGDSEDSILKQLPPLPEEPEIIIEMPPTEKCIQTDEIAFYPCERCELKFMDYEQLKIHRFKHKGEKNKCRACPKTYNRISHLKRHIAVNHPEIGLQAYKTECKICNKSFTRPERLKKHLELKHSGKIKKTTTKNRNSEGKKVSDKSKKSDEFHCKKCKEYFENDTTYKDHKCEGNADDDNVSNNEILMEIEVPIVETVYNLNVQEEYDTIMDSSFNDDGNYSASDEEDGKSLAQLKAEVKKLKSSEQQSSSNSQSQPKTKNIKTELSENPIDSQPTQTENSDSINSKLETTTTTATNNKTTTTTATNNKTTTTTATNNKTTTTATTNDNKKLGRTTKKIHLCEKCNKTFTRSTHLRRHQLTHSDHRPFSCDVCHKGFTRIDHLNIHKLNHSDTKPFTCDICKRGFTRFEHLTRHKDARHNTERLPNQKTEYCDICKRYFSSARYLQVHIKSHTDRRFTCKYCDTIFDTKSQLTSHVKIHTNDKPFLCSECGLRFVRNDYLVIHMRRHKGEKPYKCKFCDKGFPRATDLTVHERYHTGEKTHLCTICGKGFQRAYNLLVHMRVHTGERPYQCPHCSKCFAQGNDLKAHIRRHTGERFKCDMCNHGFIQAYHLTQHKRNAHGIDAQSHIRRVEKFVTPLEQQKQVEALQNKMKETTTTTSSTTTTSTTATTASETKVISTSTRNSKKSKNNQKSKKNIITTDVSKIINKSSISEQENEKFSEIQTQNVLQIVKISNESNESLLEQDSIKIEETQLQTVQAQEIDVTDDDNELLHTTKQYLVVGGSSFTQIPSNSSIFLTEIDSAKVKYETYD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00234190;
- 90% Identity
- -
- 80% Identity
- -