Bmaj009778.1
Basic Information
- Insect
- Bombylius major
- Gene Symbol
- -
- Assembly
- GCA_932526615.1
- Location
- CAKOBF010000182.1:513639-518083[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 6.3e-05 0.0037 17.8 2.6 1 23 170 193 170 193 0.97 2 18 5.8e-07 3.4e-05 24.2 2.5 1 23 236 259 236 259 0.98 3 18 1.6e-05 0.00096 19.7 4.9 1 23 298 321 298 321 0.97 4 18 3.9 2.3e+02 2.7 2.2 2 23 330 354 329 354 0.94 5 18 1e-05 0.00062 20.3 0.2 3 23 363 383 362 383 0.98 6 18 0.0059 0.35 11.6 0.3 1 23 390 412 390 412 0.97 7 18 1e-05 0.00061 20.3 0.9 1 23 418 440 418 440 0.98 8 18 9.5e-07 5.6e-05 23.6 3.3 2 23 446 467 445 467 0.98 9 18 0.0004 0.023 15.3 2.8 1 23 473 495 473 495 0.96 10 18 5.8e-06 0.00035 21.1 0.8 1 23 501 523 501 523 0.97 11 18 0.24 14 6.6 3.1 1 23 529 552 529 552 0.97 12 18 0.0012 0.069 13.8 2.0 2 23 675 697 674 697 0.92 13 18 1.5 89 4.0 0.1 5 23 703 722 700 722 0.91 14 18 3.3e-05 0.002 18.7 0.5 1 23 739 761 739 761 0.98 15 18 6.1e-08 3.6e-06 27.3 2.5 1 23 767 789 767 789 0.99 16 18 0.00038 0.022 15.4 6.4 1 23 795 818 795 818 0.97 17 18 0.0017 0.1 13.3 2.6 1 23 824 846 824 846 0.98 18 18 0.69 41 5.1 0.4 1 23 851 874 851 874 0.92
Sequence Information
- Coding Sequence
- ATGTTTGAAAATAGTAGAGTGTGTAGGACTTGTTCATTAACAGAAAATGAATTATTGCCAATTAATGCAATAATTGATAATGATACCCGTGTTGTAGATTGTTTTAATGAATGCATGAAAATTGATATAAATGAAGATGATAATCTACCACAAATGATTTGTTTAACATGCCTTGATCATATTTTAGAAGTACGAAAATTCTATTTACAAATAATAAATGCTGAAAATTATTTTAAACAAATTCTTGAAAGTAATATTACGAAAATACAAGAAAGGAATGAAATTTTTGATGCAACATTTGATCCTGAGATAGAAACCATAGAAGAAGAAAATATTTCATATTCCCCAAATGTAGTTAAAGAAGACTGTTCTGAAATTCTAGTATTAAGTTCGCAGTGtgattatgaaaataaagatattgatgatgatgatgatggttatgatgaagcaaacACAACTAAATATGAGAAAATTCATCAAATTGATGTCGAAAGACAAGAACTTCGTTTTAGTTGTAACAATTGCAATGAAACATTTAAGTATGAGAAAAACTTTAAACTTCATTTGAGAATAAATCATGGAATTGTTGAAGATGAAAGTAAAGAAAGTCAAACAATAGAGCAAGATATTACCACTGCTGAATATCAAAATGATAATTATGAAAGCCGAAATAAATCTGAAACAGTGAAAAAATCAAAAACAAAATATCGATGTCCAATTTGCAGTTATATTTTCACCTTCAAATCAAATCTTTCACGACATATGAAACGTCGTCATCCGGATGTGGATTTTTGTACGATTAAAGATAATGTTGAATTTGATGTAACAATGGAACAAGATGATGATATAAATTACAATAAATTCATAAAAAGGAAATCATCAGAACCAAAATTTCGATGTGAAATTTGTGACCATAGTTTCACGTTCAAATCAAATTTATTAAGACATAAACAACGTCGTCATAAATTACATACTGATATTGGATGTAAATGTCCTCATTTAGAATGTACTAAAATATTATTAAATGCTAAAGCATTAAAAAGCCATTTAATTAAAACACATTCAGAAGGTGAAAATAGTATATTATGTCCAATATGTGGTAAAGAATTTACAAAAAATATTGGATTAAGAAGACACTTAATTAGACATGAAAATCGTGAAAGAAATTTCATATGTAAATTTTGTGaaaaaggactttttacaagtgaagcattaaaggaacatgaacgtattcatactggagaacgtccatataaatgttcatattgtgaaaaaagttttatacaaagtggtgcatttaatacacatttattattacatactggtaaaacaatacaatgtcaaatttgtgataaaaaatttccacgtaaaacatgtttacgtgttcatatgcgtacacatacccaagaacgtccatatatttgtaatatatgttctaaaggttttgtacaaagttcacatttaaaatgtcatatggaaggacattcaatagaacgtcaatatatatgtaatatttgtgatgaaggatttcgtagaaaagattcatTACGTATTCATCGTTATAAACATATACAAAAAAAACCATTTAAATGTCCTTCATGTTCATTAGAAACGGCATCATGTTTTTGGTTTCGTAAACATTTACAACGATCACATAATATTTTTGATGATCCTTTAAAGTATAAAAGAGATGTTAGCAAATTACTTTTACAATTGCCATTAGATTCAGAGAAAATTAATAATAATTCAAATTCAAAAGATGAAACTTTCAATGAAATTTATTTAGAGGATGAAATTTATAATGAAAATAATGAAGTTGATGAAGATGATTTTAAAAATAATTTTAACGTACATTTACAACGCCATCATGAAGAAAATGATTATGAAAATATTGATAATGATAGAAATCTTCTTGAAATAAATTATGAAATTTATGATAATGATGATTCTAATAATGTTCAATTGAAATTTAATGAAAAAATTGAATCAACATTAACATCAACATCATCATCAAGAAGGAACAAATGTTCACAATGTGATAGAAAATTTTCAACAAAACAAGCAGTAAAAAGACATTTTCAAGCAATGCATGTTATTATTTGTATACTTTGTAATGTAAAGTTATCATCACAAAAGGATTTAGATGTTCATATAAAAAATGATCATGAAGAAGAATATTTAATAATGAACAAAAATAAAACTGTTAAAAAGAAATATCCTTGTCCATATTGTGATaaagaatttttaacaaaagaaaattatatatcacatgaacgtactcataccggtgaacgtccatataaatgtgaatattgtgataaaacatttatacaacgtagttttttaaaagttcatatgcgttcacatacaaatgaacgtccatattcatgtaaatattgtaaacaaacatatgcacaaaaatgtcatttaaaatctcatataaatagtattcatttaaatgataaaccatttaaatgtgatttctgtgatatgaaatttaatcgtaaagatattttacaaacacatttatttacacatattggtaaaccttttaaatgtCCTGTATGTTCAATGGAATCAGCATTATTATACAGGTTTCGTAAACACCTTGTAAAAGTTCATGGTATTCATGATGATCCACGTAATTTTAAACGTGATCCTACTTATGATCCAAATATGATTGTTGAAGAGATTAGTGATATTATGAATGGAGAAGATATTGAAATATTAGAAATTGATGATCCAAATTTTATGACTGAAATTAATTGCTAA
- Protein Sequence
- MFENSRVCRTCSLTENELLPINAIIDNDTRVVDCFNECMKIDINEDDNLPQMICLTCLDHILEVRKFYLQIINAENYFKQILESNITKIQERNEIFDATFDPEIETIEEENISYSPNVVKEDCSEILVLSSQCDYENKDIDDDDDGYDEANTTKYEKIHQIDVERQELRFSCNNCNETFKYEKNFKLHLRINHGIVEDESKESQTIEQDITTAEYQNDNYESRNKSETVKKSKTKYRCPICSYIFTFKSNLSRHMKRRHPDVDFCTIKDNVEFDVTMEQDDDINYNKFIKRKSSEPKFRCEICDHSFTFKSNLLRHKQRRHKLHTDIGCKCPHLECTKILLNAKALKSHLIKTHSEGENSILCPICGKEFTKNIGLRRHLIRHENRERNFICKFCEKGLFTSEALKEHERIHTGERPYKCSYCEKSFIQSGAFNTHLLLHTGKTIQCQICDKKFPRKTCLRVHMRTHTQERPYICNICSKGFVQSSHLKCHMEGHSIERQYICNICDEGFRRKDSLRIHRYKHIQKKPFKCPSCSLETASCFWFRKHLQRSHNIFDDPLKYKRDVSKLLLQLPLDSEKINNNSNSKDETFNEIYLEDEIYNENNEVDEDDFKNNFNVHLQRHHEENDYENIDNDRNLLEINYEIYDNDDSNNVQLKFNEKIESTLTSTSSSRRNKCSQCDRKFSTKQAVKRHFQAMHVIICILCNVKLSSQKDLDVHIKNDHEEEYLIMNKNKTVKKKYPCPYCDKEFLTKENYISHERTHTGERPYKCEYCDKTFIQRSFLKVHMRSHTNERPYSCKYCKQTYAQKCHLKSHINSIHLNDKPFKCDFCDMKFNRKDILQTHLFTHIGKPFKCPVCSMESALLYRFRKHLVKVHGIHDDPRNFKRDPTYDPNMIVEEISDIMNGEDIEILEIDDPNFMTEINC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -