Basic Information

Insect: Bombylius discolor
Gene Symbol: -
Assembly: GCA_939192785.1
Location: CALNDV010000627.1:113421-117958[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 2.3 1.4e+02 3.2 0.5 1 11 203 213 203 223 0.88

2 11 0.0014 0.082 13.4 0.2 2 23 283 304 282 304 0.97

3 11 0.022 1.3 9.6 2.8 1 23 328 350 328 350 0.97

4 11 1.7 99 3.7 0.6 3 23 383 402 381 402 0.82

5 11 0.029 1.7 9.2 1.1 3 23 410 430 408 430 0.95

6 11 0.00013 0.0077 16.6 1.6 1 23 451 473 451 473 0.97

7 11 8.6e-07 5e-05 23.5 5.4 1 23 479 501 479 501 0.99

8 11 0.006 0.35 11.4 0.7 1 23 507 529 507 529 0.96

9 11 4.3e-06 0.00025 21.3 0.8 1 23 535 557 535 557 0.99

10 11 0.0057 0.33 11.5 1.7 1 23 561 583 561 583 0.98

11 11 0.023 1.3 9.6 0.5 1 23 592 615 592 615 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	2.3	1.4e+02	3.2	0.5	1	11	203	213	203	223	0.88
2	11	0.0014	0.082	13.4	0.2	2	23	283	304	282	304	0.97
3	11	0.022	1.3	9.6	2.8	1	23	328	350	328	350	0.97
4	11	1.7	99	3.7	0.6	3	23	383	402	381	402	0.82
5	11	0.029	1.7	9.2	1.1	3	23	410	430	408	430	0.95
6	11	0.00013	0.0077	16.6	1.6	1	23	451	473	451	473	0.97
7	11	8.6e-07	5e-05	23.5	5.4	1	23	479	501	479	501	0.99
8	11	0.006	0.35	11.4	0.7	1	23	507	529	507	529	0.96
9	11	4.3e-06	0.00025	21.3	0.8	1	23	535	557	535	557	0.99
10	11	0.0057	0.33	11.5	1.7	1	23	561	583	561	583	0.98
11	11	0.023	1.3	9.6	0.5	1	23	592	615	592	615	0.95

Sequence Information

Coding Sequence: ATGAAAATTCATGAAAATGAAATGCAAAAAAATAACATTGAATTTTTAATATTGAAAGAAGAAAAAGAAAGTcgagaaaataatttgaataaaaatgaaatatttgtaaatgatggtgatgatgatgatgatgatgataattttgaatatgttgaatatttaactgatgatgaaaatcatgaagaaataaataatattaaaattgaaaatgttgataatgatgatggtgatgatgatgcaaatgaaattatttatacaattttaccaaatgataataatcaagataaaaatgaatttaaaattaatgaaaatataaaaattgaaaatcataatgttggaaatttgaatgatgatgatgatgatgataatacatatgatgaacattatttaattgaagaaattcatgttgatgatattgaaaatgatattaattattatgaaattaaaaatgaaaaaaaaaattttgaaacaaatgaacaagaaaaaaatcatgatgatggtgataatgttgagattattgaagaagataaatatgaatatcaacaagatattgaaaatgataaaaatgataataatgatgataatgatgataatgaATTAGATACATATTATTGTAATACATGTAATATTAATTTTAAATTAATTAATGAACATATTGAAAAATATCATAAAAATGAAATTATCGATTTAAATGATGATATTATTGAAAATAATACAAATAAACAATTAATAAATAATGAAATTGATAATGAGTCATTATTTCAATTAGAAATTATTAATTCAGAAGGAAAAAAATCAATTGATAAAGTTGAAACATTAAAAACAAATAAGAATAATGAATCAATTGAATGTGATATTTGTGGAGCTGTTTATCATTCAAATATTTCATTATCACTTCATCGTCGAGTTCATAAAAAAGAAACAAATTTTAAAGAAAATCCAATTAAAACAAAAAACCGAGAAAAAACTCCAGATATTTTGTATTTTTGTGCATATTGTAATACACAATTTCAAACTATGAAAAGTTTAAAATTACATTCAAAAATGCATTCAACAGATACAGCAGCAAATTCATTTGATCGAATTATAAAAAGTGAAAAGAAAATTATTGGAAAAAGCGGTCATTTAACAAATGAGAATTTTTGGTGTAAAATATGTGAGAAATCTTATGATAAAATATTTCAAGAAATTCATGAAAAATCACATGAAAATAGTATAAAAATTATATGTAAAATATGTAATAAAATATTTGATAATGATGTTGATTGTAAACTTCATATGAAATTACATGAAAATCATCCAGAACGTCGTGGTGTAACAAAAGCTGAAATGGCCGGTATTAAATTACCATATGCATGTTCATATTGTGGTAGAGAATTTAAAAAACCACATGAAAAAATTAAACATGAAAGAATACATACAGGTGAAAAACCATATAAATGTGATATATGCGGAAAATGTTTTCGTGTTTCATATTGTTTAACATTACACATTCGAACACATACAAATTCTCGTCCGTATGTTTGTGCAACATGCAATAAAAGATTTAAAGCAGCTGCAGTTTATACACATCATTTAGCATCACATTCAGATGAAAGAGCATATAAATGTGAATATTGTCCAAAAAAATTTAAAACAGCTGTATCATTGGCTGGTCATCGTAAATCACATACAAAACCATTTAAATGTACTGAATGTAGCCGTCCATTTGCATCATTATATGCTGTTAAATGTCATATGGAAACACATAAAAAATCAAATGCAAAATTACGTCATACATGTGAATTATGCGGTGCTAATTATGTTAAAATATTTGCATTACGTGATCATATTAAAGAAAAACATAAtaattacattataaatgatttaaatacaaaaaaatcaataaaattaattaaagaaataaatcatgatgatggaacaataatcgatgatattattataaatacaaatgatgatgatgatgatgataatggcaattataatgataatgatggcgatgatggtcagaataatgatgaatcgacagcacatataatagaagaaccaattttagacaataaagatgaGATTACTGTTGCTGATGTTGATAATTTTCATACTGAAGAAATTATAACTGATGAATTATGGTTGAAACAAGAATTGTAA
Protein Sequence: MKIHENEMQKNNIEFLILKEEKESRENNLNKNEIFVNDGDDDDDDDNFEYVEYLTDDENHEEINNIKIENVDNDDGDDDANEIIYTILPNDNNQDKNEFKINENIKIENHNVGNLNDDDDDDNTYDEHYLIEEIHVDDIENDINYYEIKNEKKNFETNEQEKNHDDGDNVEIIEEDKYEYQQDIENDKNDNNDDNDDNELDTYYCNTCNINFKLINEHIEKYHKNEIIDLNDDIIENNTNKQLINNEIDNESLFQLEIINSEGKKSIDKVETLKTNKNNESIECDICGAVYHSNISLSLHRRVHKKETNFKENPIKTKNREKTPDILYFCAYCNTQFQTMKSLKLHSKMHSTDTAANSFDRIIKSEKKIIGKSGHLTNENFWCKICEKSYDKIFQEIHEKSHENSIKIICKICNKIFDNDVDCKLHMKLHENHPERRGVTKAEMAGIKLPYACSYCGREFKKPHEKIKHERIHTGEKPYKCDICGKCFRVSYCLTLHIRTHTNSRPYVCATCNKRFKAAAVYTHHLASHSDERAYKCEYCPKKFKTAVSLAGHRKSHTKPFKCTECSRPFASLYAVKCHMETHKKSNAKLRHTCELCGANYVKIFALRDHIKEKHNNYIINDLNTKKSIKLIKEINHDDGTIIDDIIINTNDDDDDDNGNYNDNDGDDGQNNDESTAHIIEEPILDNKDEITVADVDNFHTEEIITDELWLKQEL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -