Bdis002735.2
Basic Information
- Insect
- Bombylius discolor
- Gene Symbol
- -
- Assembly
- GCA_939192785.1
- Location
- CALNDV010000152.1:193557-203184[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.64 37 5.0 0.5 2 23 253 271 252 271 0.79 2 15 0.00025 0.014 15.8 0.2 1 23 277 299 277 299 0.96 3 15 0.0075 0.43 11.1 2.4 1 23 305 327 305 327 0.96 4 15 0.41 24 5.6 0.8 1 21 333 353 333 354 0.93 5 15 3.8 2.2e+02 2.6 0.9 2 23 543 561 543 561 0.77 6 15 3.2e-06 0.00019 21.7 0.4 1 23 567 589 567 589 0.97 7 15 0.0075 0.43 11.1 2.4 1 23 595 617 595 617 0.96 8 15 0.91 52 4.5 1.5 1 21 623 643 623 644 0.92 9 15 0.15 8.7 7.0 1.0 2 23 943 961 942 961 0.83 10 15 0.00013 0.0076 16.6 2.8 1 23 967 989 967 989 0.99 11 15 0.00064 0.037 14.5 4.8 1 23 995 1017 995 1017 0.96 12 15 0.0028 0.16 12.4 1.6 1 23 1023 1045 1023 1045 0.98 13 15 3.7e-05 0.0022 18.3 4.8 1 23 1051 1073 1051 1073 0.98 14 15 5.2e-05 0.003 17.9 2.5 1 23 1079 1101 1079 1101 0.99 15 15 0.0045 0.26 11.8 2.4 2 23 1108 1129 1107 1130 0.95
Sequence Information
- Coding Sequence
- ATGGAGAAAATTAGTTACAATGATTTTGAAAATGTTTGCAGATTATGCTTGAATAATTTATTCTGCACAAAAGTGTCAGTATTTTCGAAATCACACACTAAGACAATTAAAAGTGATAATGATGATGATACAGCTCTAAGCAAGTTCCCTTTGCTTATTGACATGATAGTCTACTGCACAGGAGCGGATGCAGATAGACAAGAAGGATTACCAGAATTTATATGTTTAGCGTGTCTGAATAAACTTTTAGAATACACAAAATTTCGTAAAAAATGTTGTAAATCAGAAAAATTCTTAGCCAAAATTCTAAAAGCTGAAAAAATTAATAGAAAATTAGTTACACTAAAAAAAGAAGATTTAGAGTATGAAGATTATTCAAAATCGATTGAAAATTACAAAGATTTATCGTTGACAAAGAATTATTCTAGAGGTAATCATATAAATCTGGAGTGTTTAGATGAGCCTGAAATAACTGAAGACGAAATTAAACAAGAACAAAGAACAGAATCACATGAGACTGATGAAGAATATGTTCAAAATCATTCACAATCGAATGTCGTTGAATTTGATGAAATTAATGAAAAAAATCTAGAAAACAATGAAGATTCAATATCAATTAAAAATGCTGTCGAAACACAGACAACAGGAAACAACCAGAAGAATATTGAAACGAAACCAGAGGAAAGAATTGTGAAAAATATTCAGAAATCTGTACAATCTGATAAAAGTCGAACAACTAAAAAAGAAGATCTTGAACAATGTCAAGTATGTGGTAATTTTTATCGTCAACTTCAAGTTCATATGAAAATACATGAAGGTATCAAGAATTATAAATGTGAAATATGCGATAAATCTTTCTCAGCTAACAGGATTTTAAAAGATCACATGGGTATTCATTCAAACGACAGACCTTTTCAATGTAGTTATTGTGAAAGAGCATTCAAATGGAAACAATCATTAAAAGCACATGAATTACATCATACAAAAGAGAAGAATTATGAATGTGATATTTGTAAAGCTAAATTTTTATATTCTTCATcgtttaactatcataaaaaaGCAGATAGACAAGAAGGATTACCAGAATTTATATGTTTAGCGTGTCTGAATAAACTTTTAGAATACACAAAATTTCGTAAAAAATGTTGTAAATCAGAAACATTCTTAGCCAAAATTCTAAAAGCTGAAAAAATTAATAGAAAATTAGTTACACTAAAAAAAGAAGATTTAGAGTATGAAGATTATTCAAAATCGATTGAAAATTACAAAGATTTATCGTTGACAAAGAATTATTCTAGAGGTAATCATATAAATCTGGAGTGTTTAGATGAGCCTGAAATAACTGAAGACGAAATTAAACAAGAACAAAGAACAGAATCACATGAGACTGATGAAGAATATGTTCAAAATCATTCACAATCGAAAGTCGTTGAATTTGATGAAATTAATGAAAAAAATCTAGAGAACAATGAAGATTCAATATCAATTGAAAATGCTGTCGAAACACAGACAACAGGAAACAACCAGAAGAATATTGAAACGAAACCAGAGGAAAGAATTGTGAAAAATATTCAGAAATCTGTACAATCTGATAAAAGTCGAACAACTAAAAAAGAAGATCTTGAACAATGTCAAGTATGTGGTAATTTTTATCGTCAACTTCGAGGTCATATGAAAATACATGAAGGTATCAAGAATTATAAATGTGAAATATGTGATAAATCTTTTTCAGCTAACAGAACTTTAAAAGATCACATGGGTATTCATTCAAACGACAGACCTTTCCAATGTAGTTATTGTGAAAGAGCATTCAAATGGAAACAGTCACTAAAAGCACATGAATTACATCATACAAAAGAGAAGAATTATGAATGTGATATTTGTAAAGCTAAATTTTTACATCCTTCATCGTTTTACTatcataaaaagGATGATTTCAAATTTATATGTCGACTTTGTTTACGAAAGATATTATTTTCTAAAGTATCAATATATCCACCGGCGAACGAAAAGGAATCAGTAGCAAAACTAATTGAGTACGCGTTGAACTTGAAAATATCACAAAACGACCAATTACCAAATGTAATTTGTACAATTTGTATGAATAAACTTCTAGAATACACGAAATTTCGTCGAAAATGTTTAATTTCAAATGAAATATTGCGCCAAATTTTAAATGAAAATCAATTTAATGAAAAAAAAATTGAAAATTCGGTTGATGTAAACTTTTGTGAAAATCAAGAATCGGAATTATGGGAAAACGTTTCTCCAGATAATGTTGAGAATGATTCTACTGAAGTAGAAAATGAACATGAGAGTTTAATTCAAAATTCTGAAGAAATTCGAATAGATTGTGATGAGTTTAAGAAATTGTCTGATTTAGAATTTCCACATGAATATGAAGAAGTTGAAGAAAGAAAACAAGAACAAAAAGATTATGAATTTGAATACGTAACGGTCGACGTGAAAGACCAATTAGAGGAACAAGAAAAAGAATTAGAGCATAAATATTACTTGGAAAATGAAAACAACAACGTTGGCAAAAATAATATGGAATTAAATGAGGATACACTACAAGAGGAAGACATTCCAATAATTGATGATTTTTTCGTAATTGAAATACAAGATGATGATGATACTAAAAATGACGATAAAATTGAAGAAAATATTCAAAATTTAATGAATAATTTTGAAGTTGATAGCAACGAAAATGTAAAAAAACATAAAAGAAATACACAAAAACGAGGACGTTTATCAAAAATTAAAAATGAAGGCAATGATTATAGAAAAATTAAACAAAAATCAAAAGGAAAAGAAGAAGAAAAACAATGTCAAATATGTGGTAAAATGTATCGTAAACTTAATTACCACATGTTAGTTCATAAAGGCATAAAAAACTATAAATGCACAGTATGTAGTCGAGCTTTTACTATGAGCTGTACTCTAAAGGAACATATAAAAATTCATACGAATGATAAATCATTCAAATGTAGTCACTGTGAAAAAGGATTCAATTCAAGACAATCATTAAAAGCACATGAATTACATCATACAAAAGAAACGAATTATGAATGTGATATTTGTAAACGTAAATTTGTATATGGCACAACAttaagatatcataaagaaactcatacacaaatacgtaaacataaatgtgatatatgttcaagagaatttataacaaaacatgcattaaaaaaacattatcgtatacatactggtgaaaaaccatatgaatgtaaagaatgtggtaaacgatttgcacattatgctggattttcacttcatagaaaaacacattctaaagaaatatcaataagatgtgatttatgtgatattggttttcgctataaatcaatatataaaaatcatatgaaaaaaCATCATCAAGAAATTGATAAAAAATAA
- Protein Sequence
- MEKISYNDFENVCRLCLNNLFCTKVSVFSKSHTKTIKSDNDDDTALSKFPLLIDMIVYCTGADADRQEGLPEFICLACLNKLLEYTKFRKKCCKSEKFLAKILKAEKINRKLVTLKKEDLEYEDYSKSIENYKDLSLTKNYSRGNHINLECLDEPEITEDEIKQEQRTESHETDEEYVQNHSQSNVVEFDEINEKNLENNEDSISIKNAVETQTTGNNQKNIETKPEERIVKNIQKSVQSDKSRTTKKEDLEQCQVCGNFYRQLQVHMKIHEGIKNYKCEICDKSFSANRILKDHMGIHSNDRPFQCSYCERAFKWKQSLKAHELHHTKEKNYECDICKAKFLYSSSFNYHKKADRQEGLPEFICLACLNKLLEYTKFRKKCCKSETFLAKILKAEKINRKLVTLKKEDLEYEDYSKSIENYKDLSLTKNYSRGNHINLECLDEPEITEDEIKQEQRTESHETDEEYVQNHSQSKVVEFDEINEKNLENNEDSISIENAVETQTTGNNQKNIETKPEERIVKNIQKSVQSDKSRTTKKEDLEQCQVCGNFYRQLRGHMKIHEGIKNYKCEICDKSFSANRTLKDHMGIHSNDRPFQCSYCERAFKWKQSLKAHELHHTKEKNYECDICKAKFLHPSSFYYHKKDDFKFICRLCLRKILFSKVSIYPPANEKESVAKLIEYALNLKISQNDQLPNVICTICMNKLLEYTKFRRKCLISNEILRQILNENQFNEKKIENSVDVNFCENQESELWENVSPDNVENDSTEVENEHESLIQNSEEIRIDCDEFKKLSDLEFPHEYEEVEERKQEQKDYEFEYVTVDVKDQLEEQEKELEHKYYLENENNNVGKNNMELNEDTLQEEDIPIIDDFFVIEIQDDDDTKNDDKIEENIQNLMNNFEVDSNENVKKHKRNTQKRGRLSKIKNEGNDYRKIKQKSKGKEEEKQCQICGKMYRKLNYHMLVHKGIKNYKCTVCSRAFTMSCTLKEHIKIHTNDKSFKCSHCEKGFNSRQSLKAHELHHTKETNYECDICKRKFVYGTTLRYHKETHTQIRKHKCDICSREFITKHALKKHYRIHTGEKPYECKECGKRFAHYAGFSLHRKTHSKEISIRCDLCDIGFRYKSIYKNHMKKHHQEIDKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -