Bdis000312.1
Basic Information
- Insect
- Bombylius discolor
- Gene Symbol
- -
- Assembly
- GCA_939192785.1
- Location
- CALNDV010000016.1:41111-42934[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 8.7 5e+02 1.5 2.3 3 23 72 93 71 93 0.95 2 13 0.018 1 9.9 0.9 2 21 172 191 171 192 0.91 3 13 7.7 4.4e+02 1.6 4.3 2 23 237 258 236 258 0.93 4 13 3.4e-05 0.002 18.5 0.7 1 23 264 286 264 286 0.98 5 13 0.0047 0.27 11.7 0.9 2 21 311 330 310 331 0.91 6 13 3.9 2.2e+02 2.5 5.8 2 23 377 398 376 398 0.91 7 13 6.2e-07 3.6e-05 23.9 1.7 1 23 404 426 404 426 0.99 8 13 0.00025 0.014 15.8 5.3 1 23 432 454 432 454 0.99 9 13 0.006 0.35 11.4 2.6 1 23 460 482 460 482 0.98 10 13 0.0001 0.0058 17.0 1.1 1 23 488 510 488 510 0.97 11 13 4.4e-06 0.00026 21.2 0.9 1 23 516 539 516 539 0.92 12 13 0.0012 0.07 13.6 0.3 1 23 544 566 544 566 0.96 13 13 2.8e-06 0.00016 21.9 0.6 1 23 572 594 572 594 0.96
Sequence Information
- Coding Sequence
- ATGGATGTAGATAACGAGATAAAAATTGAAATGGAAGAACAAACTTTCATTAAGGTTGAAGAAGATCAAGAATTCATTCGTAGTGCATTTTCTCATACTGAAACAAATGAAGATGAGACATTACCAATAGTTCCAAGCCAAATAAATAAAAAACTATCAATAAGGAAATGTGGTGAGATTTTCACTTCCACAAAAGAAAATTTAATACTTCTATGTTATCTATGTCATGAACCGTCAAAAACATTAGAAGATTTTGGTGAACATCTACATAAATTTCATGAATCCAAGTCATTTTGTGATTTTCAAGAAGAACTTGATCCTATACCTGTAGTTGATGAAACTACTACTACCTATAAAACAAATGATACAAAAATAAATAATTTTTTACCAGAAACAGGAGATGAAAGTTTACTTGCTAAAGCCAAATTAGAAATAGGCATTTATGAAATAGAGAAAGATGCTGAATCAATGGTGCAGTGCAAAGACACAACTAGAAATAAAAAATATAACATTCACTGTGAAATATGTAAAAGGTATTTTAAATCTCAAGCAACAATGGATAGACACAAACTCACTTGTGAAGTTATTTTAGCATATGCTGAAAAAGAAAAATTACGATTCAGGAACAAAAATCAAAGTGAAAAATCGAATGTTGATAATTTAGAGGTTTCTGATAGTGACACTTTTGTTGAAGCAGTTGTTACCAACCAATGTAGATATTGTCATCGTAAATTAAAAAGTAATATTCTTCGTATTGAACATGAATGTATTCACACTGGTGATAGATTGTATCAATGTGATATTTGTGAAAAAAAATTTCGAGCTAGAGAGTCGTATAATACTCATATAATTTCACATAAAAGATTCATGGACCAACGAGATGAGAAATTTTCCAGAAAAGGTCTATCTAGGAATAAAAAATTTAAGATTCACTGCGAAGGATGCGATAAATATTTTACATCACAGACAACAATGGATAGACACAAACTTACCTGTGAGGTTACTTTAGAATTTAGTAAAAATGAAAAATTACGTACGGATTCAGACAATAAAATAGAAAATGAAGAAGTAATTGGTATTTCTGAAGCATCTGGTTCTAAAGTTTTTGCTGAACCAATCGAAATCAATAAATGTAGATTTTGTCATCGTAGATTCAAAAGTAACATTTTGCGTATCGAACATGAATGTCTTCACACTGGTGATAGATTGTACAAGTGCGATACTTGCCCAAAAAGTTTTCGAACAAGGGATTACTTTAATATTCATATAATGTCGCATAAAAAGATAAGACCTTATCAATGCAAATTTTGCAATCTTAGGTTTACAAACCAATGCAATTATGCAGTTCATTTGAAACGAcatactggagagaaaaagtacaaatgtcaatactgtgatatgagttttgtggcaacaaccgaaaggaaacatcatgaaagagtacacactggtgaaaaaccattccaatgtaatgaatgtggaagtttcttcgcaacaagaagtcgcttaaattcacatcttgtgaaacatcaaccagaaagaccatttaaatgtgatgaatgtaacaaaactttttatactgcagcaaacttgaaagaacataaaattggtaaacatactgagaaaaaatttgaatgtgatacgtgtggagctagacttgccactagagcatatttgacgaaacataaactacttcattctgaagaacgacagtatttatgttcgatatgtggtaaaggatttcgtcaacaatcTGGATTATTCATCCATTCCAAAACTCATAAAAAAACAGATAATGACGATAAAAAACACGAAACTGAATAA
- Protein Sequence
- MDVDNEIKIEMEEQTFIKVEEDQEFIRSAFSHTETNEDETLPIVPSQINKKLSIRKCGEIFTSTKENLILLCYLCHEPSKTLEDFGEHLHKFHESKSFCDFQEELDPIPVVDETTTTYKTNDTKINNFLPETGDESLLAKAKLEIGIYEIEKDAESMVQCKDTTRNKKYNIHCEICKRYFKSQATMDRHKLTCEVILAYAEKEKLRFRNKNQSEKSNVDNLEVSDSDTFVEAVVTNQCRYCHRKLKSNILRIEHECIHTGDRLYQCDICEKKFRARESYNTHIISHKRFMDQRDEKFSRKGLSRNKKFKIHCEGCDKYFTSQTTMDRHKLTCEVTLEFSKNEKLRTDSDNKIENEEVIGISEASGSKVFAEPIEINKCRFCHRRFKSNILRIEHECLHTGDRLYKCDTCPKSFRTRDYFNIHIMSHKKIRPYQCKFCNLRFTNQCNYAVHLKRHTGEKKYKCQYCDMSFVATTERKHHERVHTGEKPFQCNECGSFFATRSRLNSHLVKHQPERPFKCDECNKTFYTAANLKEHKIGKHTEKKFECDTCGARLATRAYLTKHKLLHSEERQYLCSICGKGFRQQSGLFIHSKTHKKTDNDDKKHETE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -