Bdis013609.1
Basic Information
- Insect
- Bombylius discolor
- Gene Symbol
- -
- Assembly
- GCA_939192785.1
- Location
- CALNDV010001419.1:27114-33412[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.019 1.1 9.8 0.9 1 23 220 243 220 243 0.93 2 22 0.05 2.9 8.5 1.0 1 21 249 269 249 272 0.81 3 22 0.75 43 4.8 1.7 1 23 279 302 279 302 0.95 4 22 1 59 4.4 0.1 10 23 311 323 308 323 0.86 5 22 7.3e-06 0.00042 20.6 2.4 3 23 337 357 335 357 0.96 6 22 0.0035 0.2 12.1 0.1 1 23 384 406 384 406 0.97 7 22 0.00051 0.03 14.8 2.1 1 23 412 435 412 435 0.95 8 22 0.87 50 4.6 3.7 1 19 441 459 441 463 0.86 9 22 0.00038 0.022 15.2 3.9 2 23 470 492 469 492 0.96 10 22 0.24 14 6.4 0.6 1 23 498 520 498 520 0.97 11 22 0.082 4.7 7.8 0.3 1 23 782 805 782 805 0.93 12 22 0.12 7.1 7.3 3.2 1 23 811 834 811 834 0.91 13 22 0.028 1.6 9.3 4.9 1 23 841 864 841 864 0.98 14 22 0.0068 0.39 11.2 1.5 1 23 869 891 869 891 0.98 15 22 0.061 3.5 8.2 3.6 2 23 898 919 897 919 0.95 16 22 4.9e-06 0.00028 21.1 3.5 1 23 925 947 925 947 0.98 17 22 0.00042 0.024 15.0 1.7 1 23 952 973 952 973 0.96 18 22 0.00037 0.021 15.2 2.3 1 23 985 1007 985 1007 0.96 19 22 0.0002 0.011 16.1 0.5 1 23 1027 1049 1027 1049 0.98 20 22 2.4e-05 0.0014 18.9 3.4 1 23 1055 1078 1055 1078 0.98 21 22 0.0054 0.31 11.6 4.0 1 23 1084 1106 1084 1106 0.98 22 22 0.068 3.9 8.1 3.3 2 23 1112 1133 1112 1134 0.94
Sequence Information
- Coding Sequence
- ATGAATGAAATTGAAATAATCCATCAACCTAACTTTAAAGTGGATGACGCTTGTCGTACGTGTGGAGCATTTTATGAGGATGAAGTTTTAATTCCAATATTTGACCAAGTTGAAATCAGTACAGAAAACTCATTTTTTAGTATAGTTGAAGAGCTTCGATTAATGGATATCAAAATTTTTGAAGATGATAATTTACCTCAACAGATTTGTATTAATTGCATAAACGAACTAAAAAATACTCATTTATTTCGTCATAAATGTAAACTTGCACAGGATGCATTGAAAGAATATTTTATACGAAGCACTCTGAAAACTGAAGCCGACAACATCGACAATATAATTTCAGAAGAACATCAAACAAAATCAGAAGACTTGTATAAAGAAGAACAGTCCTCAGATGATTTTCTTGATTCCAAAATAACTAATATAAATATAGATGTCCTTGATGAAAACGAAATTCTTTCTGATGAATTTGAAAGTGATGAAGATTGGAATGATATTGTGGAGATATCATCTGTTTTTGTTGATAAAAAAAAGTCTGAAATTTGTAATGATGATGAAAATTCAAAGTTGGTCGAATGCAATATTTGTTTAACTTTTGCATATAAAGCACAAAGAATGTGTCATGGAAATGGTTGTACACCAAAAACAAATATATTTACATGTTTCTATTGCACAAATGCATTTAATACAAAAGAAGAAATTGAAAATCATATTTACGAAACACACCCAGAAGATAGTCCATTTGTGTGTCCAGTTTGTAATGAATCATTTAAAACTGATAAACTTTGTGAATCACATGTACAAGATGTCCATAGTGATATTGAACAACCATATCCTTGTAATGTTTGCTCTGGTGCTCATAAAAATTTAAGAAATCTAcgaacacataaacgtctaactcatgatactggaaattatgaatgcgTATTTTCAAAAGCAGCATTGAAAAGACACATGGAAAGACATAAAGACGATGGAACTTTCGAAGAAGAAATTACACATTTGTGTTCATTCTGTGGAAAAGGATTCCGATCTAAAGCATCTTTAAATACCCATATGAAAATACATAATTTTGATAGTACTCAAAAAACATCTAACAATAGTGTTTATTCTAATGATGAAGATAAAAATAAGATTACTAAAAATTATGATTGTGCTTTTTGTCCTGAAAAATTTGCTTCATTATTAGGATTACAAAATCATCTGAAAATGCATGATGAAAATCGAAAACATAAATGTGAATTCTGTGGTGTAGGTTATAATCGTAGTGAACATTTAAGAGATCATATAAATGCTAAACACACAAAAACTAAAAAATATTATTGTTCATTCTGTAATAAAGTGTTCGTATCTATGACAGCAAAAAATTCTCATGAAAAATGCCATAAGACAGACAAAGTCATTCATTGTAGTTATTGTGACAAAACGTTTAGACGCAGCTCAAGAGCAAGAAATCATGAACGTACACAACACACCAAAGAGAAACGTCACACATGCATGGTTTGTGATGTTGGATTCTTAAGTTATGCCGCTTACAAAGCTCATCAAAATAAACACTCACCAGAAGAACTGCTACAAATGAAAGAAAAACTCCTATTTGAAAGTTTAAAATCGGGTACAAAAGAAACTGAAGATGTTCAAGAATCAGAAAAAGTTATGAACAATTTGGAAATCATACATCATCCAATGAAGTTTAAATTGGATGATACTTGTCGTACCTGTGGTGCGTTTGTCAGTGATGGAGTCTTGGTGCCAATATTTGACCAAGTTGAAATCAGTACAGGAGATTCACTTTTTCAAATATCTGAAGAGCTTGAATTGATGAATATCAAGATTGAAAAAGATGACAATTTACCTCAACAGATTTGCATTAATTGCATAAACGAACTGAAAAATATTCATTTATTTCGTGATAAATGTAAACTTGCTCAGGATGTACTGAGAGAGTATTTCATACAAAATGTTGTCGAAACTGAAATCTACATCAAAGATACAATTCCAGAGGAGCTTCAAATAATACCAGAAGACTTGATAAAAGAAGAAAAACCTTTAGATGATGTCTTTAAAAAAAAAGAAACCGTTACTGATCCATTGGAAAGTGATGAAGAATCAAATTTTGCAGAAGAATCAAATTTTACAGAAGAATCAAATTTCGCAGAAGAATTAGAATTCTTAGATGAAATAAGATCCGGAGAAGAATCTAATCTTGTTGATAAAGAATATTTTGAAACTTCAGAAAAAGGAAATGCAAAGGTATTGAAATGCGATAATTGTTTACATTTTGCATATAAGCCAGAGGAATTACATCATGGAAATGGTTGTACTACAATGCAAGATATATTTTCATGTTTTTATTGTGTAAAATCATATACAGAAGAAAAAGAAGTTGTAAATCATATCATTGAAACACATCTAAAAGGTCGTCCATACTTGTGTCCAATTTGTAATGAAACATTTGAGAAAAATCAACACTGTTTCAAACACGTGAATGAGGTTCACAAAGATGTTGAAACACCATATTCTTGTGACAATTGTTCTAATTGTTTTTCATCTTTAAAAGGTGTAAGACGACATAAACGGAAATATCATCCAACTGGAAGTTATGAATGCCGCATATGTTATGAGAATTTTACTAATATATACAAATTTAAAATTCACCTTGATAGACATAGTCAagataaaccactcaaatgtaaatattgcccaaaatcatttttaatacaatgtcatttacaagaccatgaagcaacacatactggtgaaagacgatatcgttgtaaggattgtgataaaacatttaaaaattcatcatcttattatattcataaaagagagcataacagaaaaaatcattattgtgaaatttgtaacaagGTTTTTTCAAGAGCAAGATTAAAAGCACACATGGAAAAACATAACAACAAAGAAGGCTTAGAAGATGAAATTCGATATCTATGTTCAATTTGCGGAAAAGGTTTTCCAACATCAATTTGTTTAAATAGTCACCTTCATAGCCATAATCCTACTAGAAATTATAATAAAAAAAAAACAGTGACTACTAAAATAATTCAAAAATATGATTGTTCTTTATGCGATGAAAAATTTTCTTCCTTATTAGGATTACAATATCATATGAAAATGCATGATGAAAGTCGAAAATATAAATGTGATATATGTAGTATAAGATATAAACGTAAAGAACATTTAACACAACATATAAATTCCAAACATACAAAAACAAAACAATATTATTGTTCATTCTGTAATAAAGTGTTCGTATCATGCACAGCGAGAAATTCTCATCAAAAAATTCATACAGAATACGATAACCGATGTTTATATTGTTCAAAAACATTTAAAACCGAAGGAAGAGCAAGGCAACATGAGCGTTTACATCATACCAAGGAAAAATCTTTAATATGCATCGTTTGTAATATGGGATTCAATACTTATACTAAATATAAATGTCATCAAGCAAAAAAGCATTCAGAAGAAGAACTAATGAAAGCAAGAGAAAAGATTCTAACTGAGAATTTAAAATCATCTACAAAGGAAAGTGACAATATTGAAGAGGAAATTATTAATGATGAAGGAGTAAACGAGTAA
- Protein Sequence
- MNEIEIIHQPNFKVDDACRTCGAFYEDEVLIPIFDQVEISTENSFFSIVEELRLMDIKIFEDDNLPQQICINCINELKNTHLFRHKCKLAQDALKEYFIRSTLKTEADNIDNIISEEHQTKSEDLYKEEQSSDDFLDSKITNINIDVLDENEILSDEFESDEDWNDIVEISSVFVDKKKSEICNDDENSKLVECNICLTFAYKAQRMCHGNGCTPKTNIFTCFYCTNAFNTKEEIENHIYETHPEDSPFVCPVCNESFKTDKLCESHVQDVHSDIEQPYPCNVCSGAHKNLRNLRTHKRLTHDTGNYECVFSKAALKRHMERHKDDGTFEEEITHLCSFCGKGFRSKASLNTHMKIHNFDSTQKTSNNSVYSNDEDKNKITKNYDCAFCPEKFASLLGLQNHLKMHDENRKHKCEFCGVGYNRSEHLRDHINAKHTKTKKYYCSFCNKVFVSMTAKNSHEKCHKTDKVIHCSYCDKTFRRSSRARNHERTQHTKEKRHTCMVCDVGFLSYAAYKAHQNKHSPEELLQMKEKLLFESLKSGTKETEDVQESEKVMNNLEIIHHPMKFKLDDTCRTCGAFVSDGVLVPIFDQVEISTGDSLFQISEELELMNIKIEKDDNLPQQICINCINELKNIHLFRDKCKLAQDVLREYFIQNVVETEIYIKDTIPEELQIIPEDLIKEEKPLDDVFKKKETVTDPLESDEESNFAEESNFTEESNFAEELEFLDEIRSGEESNLVDKEYFETSEKGNAKVLKCDNCLHFAYKPEELHHGNGCTTMQDIFSCFYCVKSYTEEKEVVNHIIETHLKGRPYLCPICNETFEKNQHCFKHVNEVHKDVETPYSCDNCSNCFSSLKGVRRHKRKYHPTGSYECRICYENFTNIYKFKIHLDRHSQDKPLKCKYCPKSFLIQCHLQDHEATHTGERRYRCKDCDKTFKNSSSYYIHKREHNRKNHYCEICNKVFSRARLKAHMEKHNNKEGLEDEIRYLCSICGKGFPTSICLNSHLHSHNPTRNYNKKKTVTTKIIQKYDCSLCDEKFSSLLGLQYHMKMHDESRKYKCDICSIRYKRKEHLTQHINSKHTKTKQYYCSFCNKVFVSCTARNSHQKIHTEYDNRCLYCSKTFKTEGRARQHERLHHTKEKSLICIVCNMGFNTYTKYKCHQAKKHSEEELMKAREKILTENLKSSTKESDNIEEEIINDEGVNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -