Bdis014985.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Bombylius discolor
Gene Symbol
grau
Assembly
GCA_939192785.1
Location
CALNDV010001784.1:12298-24547[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.016 0.94 10.0 0.2 2 23 247 269 246 269 0.96
2 16 5.5 3.2e+02 2.1 0.4 6 23 278 295 278 295 0.97
3 16 6.5e-06 0.00038 20.7 3.7 1 23 301 323 301 323 0.98
4 16 0.00071 0.041 14.3 1.5 1 23 331 353 331 353 0.96
5 16 5.4e-07 3.1e-05 24.1 0.5 1 23 361 384 361 384 0.96
6 16 0.37 21 5.8 1.1 2 23 391 412 390 412 0.95
7 16 0.0022 0.13 12.7 2.0 2 23 421 442 420 442 0.97
8 16 0.00028 0.016 15.6 0.5 1 23 449 472 449 472 0.97
9 16 1.4e-06 8.3e-05 22.8 0.4 1 23 478 500 478 500 0.99
10 16 0.00049 0.028 14.8 6.0 1 23 506 529 506 529 0.98
11 16 0.0015 0.084 13.3 0.7 1 23 666 689 666 689 0.93
12 16 0.014 0.78 10.3 0.2 2 23 698 719 697 719 0.95
13 16 0.036 2.1 9.0 1.0 1 23 726 749 726 749 0.93
14 16 0.012 0.67 10.5 0.2 1 14 754 767 754 771 0.86
15 16 0.0046 0.27 11.7 1.7 1 23 813 836 813 836 0.95
16 16 0.00013 0.0074 16.6 0.1 1 17 841 857 841 858 0.95

Sequence Information

Coding Sequence
ATGATTTGTAGATTGTGTTTACTTGAGTCAAAAGAAAAATTAAATATATTCGAAGGTGATGGAATAAATTTAAAAATTGCTGAGATTATAGCTCAACATTTTTGGTTTATGCCAAAAGAAGATGATCAAATATCGACTATAATATGTAGTTCATGTTGGTCAAAGGTTGACAGTTTTCATCAATATTATATATTTGTGAGAAATGTTCAACAAAGCTTATTGGATAATCCACTTTCAATTCAGAATGATCCCACATACAATCAAAATAGTAATAATAAAACATCTTTTAAGAAGGAAGAAAATGACGATGACTGGATGAGTGATCCTGATATAAAAGATTATAAATTAGAAAACGAACCTAACGATTTAAATAATGAATTTGATAAATTAATTAGAGATCCAATTGAGTTCGATGTAAGCACTCAAGAACAAGAACAAATTCCAATAGAGTCAAAAATTGACATAAATGTTGAAGTAAGTAGTAGCGGCAAGAAGAATCTTAAAAAAAAATTATCTTCTAGTGAAAGAAAACCAAGTGAAAGGAAAACTAGTGAACGAAAAACCAAACGTGGTCGTCCTAAAAAAAAATCAAAAAATGCTAGTGATAGTGAAGAAGATTTACCATTAACACATTTTATGCAAAAACAACAAAAAGTTAAAAGAACTAAACAAGAACAATCAGAATGGTTAAAGAAATCAAAGGAAGATGATGAAAAGATAGCAAAATATATGAAATTAAAATGTGAAATATGTCTTGAAGAATTTATAACATTTGCTCAGATTAAACAACATTATAGAATAAGTCATAATAAAAAAGGATATGTATTATGTTGTAATAAGAAATTATATAAAAGAGTATTGTTATTAGATCATGTTAACAAACATATAGATCCAAATTATTTCAAATGTTCCGAATGCAATAAAATATTTGCTGACAAACAATGTTTAAAAAATCATATGTTAAGACATGAATCAGATGAATCAAAAGTTTTTAAATGTGACCAATGTCCAAGAAAATATGCAAAACAATATTTATTGGAACAGCATAAATTTATTCATGTACCACCAGAGGAACGACAATTTATATGTGATGATTGTGGAAAAGCATTTTCAACAAATAATTTATTACAAACACATCGACGTTATGTACATGAAAATGTTTATGGTAAAATGTGTCATATTTGTGCAAAAGTAATACGTGGTACAACAATGTTTGAAAAACATCAATTAGAACATGCTGGTATTGTTGAACCAAAAGTACAATGTAATAAATGCGGTGCATGGTTAAAACATGAATATAGTTTAAGAAAACATATGAGAAGACATGTTGAATCATTAGTTGTTCATAAATGTAATACATGCGGTAAAATAGCACCATCAAGAGGTGCATTAAGAAGTCATTTACGTTATGTACATGAATCTGAAAGGATATATCAATGTGGAGTATGTGACAAAGCATTTAAAAAGCCGATAACATTAAAGgaacatatgacgacacatacaggtgaagtactttatacatgccgtcattgtcctagaacatttaattcaagtgcaaatatgcatgcacatcggaagaaaaaacatagaaaagaatgggaagaatcaagacgaaTTCgtggtcgtcctgaagatgaaattaaaatgtcaataactactaaaacaattgaaattataaatgatacaattaaaaatactattaaaggtcaaacaaatgatgatagtattgatgatgatgatgatgatgatgatgttgatgatggtaacgataaaagtttcattgaaatagttaattcatataaaaatgaagaaattttagatgaaaatgatgaatttattgtagatgacgataatgttCAACAGAATCAATATATGCTTGTTCTTCATCAAACAGATAATACAGATAATTTAGTACAATACGGTTCAAAAAACTTACTTGGAATTCATAAAAATAATACACATTTAAAAGGTCCAAGGAAAAAATATATTTATACACATATATGTGAAATATGTGCTAAAATATTTCAATCACGTTCATTTTTAATAAAACATCAATTAGAAGATCATATGGGACAAAAAATTCCACCAGTAAAATGTGAAATATGTAATGCATATTTAAAAAATAAACGTTCATTACGTGAACATTTAGCTGGACATAATGATCAAGGTCAAATACATGAATGTAATATATGTGGTAAAAAAGGTCCAACACGTCGTTCAATATTAGATCATAAAAGATTCGTTCATAATGATAGAAAATTTGTATGTCATATATGTAAAAAAGGTTTTAAAAGACCGATTGTTTTGAAAGTAAAAGAACATTTTGGTGAAAAATTACCCCCAGCACAATGTGAAATATGTAAAGCGTGGTTTAAAAATGAATTAACAATACGTTTTCATATGAAACGACATGAAGATCAAAATACCGGAAAATTATTTGAATGTAATATATGTGGTAAAACAGCAACAACACGTTGTGCAATTAAAACACATAAAAATTATGCACATAGTGATAAAAAATATAAATGTTCAATATGCGACAAAGTATTTAAAAGAGCAATTAATTTAAAAGTAAGTGTAAAAAAAAATTTATATTATAAATTAAATTAA
Protein Sequence
MICRLCLLESKEKLNIFEGDGINLKIAEIIAQHFWFMPKEDDQISTIICSSCWSKVDSFHQYYIFVRNVQQSLLDNPLSIQNDPTYNQNSNNKTSFKKEENDDDWMSDPDIKDYKLENEPNDLNNEFDKLIRDPIEFDVSTQEQEQIPIESKIDINVEVSSSGKKNLKKKLSSSERKPSERKTSERKTKRGRPKKKSKNASDSEEDLPLTHFMQKQQKVKRTKQEQSEWLKKSKEDDEKIAKYMKLKCEICLEEFITFAQIKQHYRISHNKKGYVLCCNKKLYKRVLLLDHVNKHIDPNYFKCSECNKIFADKQCLKNHMLRHESDESKVFKCDQCPRKYAKQYLLEQHKFIHVPPEERQFICDDCGKAFSTNNLLQTHRRYVHENVYGKMCHICAKVIRGTTMFEKHQLEHAGIVEPKVQCNKCGAWLKHEYSLRKHMRRHVESLVVHKCNTCGKIAPSRGALRSHLRYVHESERIYQCGVCDKAFKKPITLKEHMTTHTGEVLYTCRHCPRTFNSSANMHAHRKKKHRKEWEESRRIRGRPEDEIKMSITTKTIEIINDTIKNTIKGQTNDDSIDDDDDDDDVDDGNDKSFIEIVNSYKNEEILDENDEFIVDDDNVQQNQYMLVLHQTDNTDNLVQYGSKNLLGIHKNNTHLKGPRKKYIYTHICEICAKIFQSRSFLIKHQLEDHMGQKIPPVKCEICNAYLKNKRSLREHLAGHNDQGQIHECNICGKKGPTRRSILDHKRFVHNDRKFVCHICKKGFKRPIVLKVKEHFGEKLPPAQCEICKAWFKNELTIRFHMKRHEDQNTGKLFECNICGKTATTRCAIKTHKNYAHSDKKYKCSICDKVFKRAINLKVSVKKNLYYKLN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
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90% Identity
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80% Identity
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