Bdis010535.2
Basic Information
- Insect
- Bombylius discolor
- Gene Symbol
- -
- Assembly
- GCA_939192785.1
- Location
- CALNDV010000871.1:10551-16707[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.022 1.3 9.6 0.8 1 23 262 285 262 285 0.94 2 21 0.001 0.058 13.8 1.9 1 23 291 314 291 314 0.95 3 21 0.15 8.4 7.0 0.4 1 23 321 344 321 344 0.98 4 21 0.91 52 4.5 7.2 1 23 349 371 349 371 0.98 5 21 0.00019 0.011 16.1 6.3 1 23 390 412 390 412 0.98 6 21 0.00018 0.01 16.2 1.2 1 23 417 438 417 438 0.96 7 21 0.00016 0.0092 16.4 0.3 1 23 450 472 450 472 0.96 8 21 0.0001 0.006 16.9 0.3 1 23 492 514 492 514 0.98 9 21 2.4e-05 0.0014 18.9 3.4 1 23 520 543 520 543 0.98 10 21 0.0039 0.23 12.0 2.3 1 23 549 571 549 571 0.97 11 21 1.1 66 4.2 0.4 2 14 577 589 577 596 0.79 12 21 0.025 1.5 9.4 0.6 1 23 872 895 872 895 0.93 13 21 1.1 63 4.3 0.6 1 23 901 924 901 924 0.82 14 21 0.011 0.62 10.6 4.2 1 23 931 954 931 954 0.98 15 21 0.019 1.1 9.8 7.0 1 23 959 981 959 981 0.98 16 21 0.00061 0.035 14.5 5.6 1 23 987 1010 987 1010 0.94 17 21 1e-05 0.00058 20.1 1.2 1 23 1023 1044 1023 1044 0.97 18 21 0.0076 0.44 11.1 0.2 1 23 1071 1093 1071 1093 0.98 19 21 2.4e-05 0.0014 19.0 2.6 1 23 1099 1122 1099 1122 0.98 20 21 0.51 29 5.3 6.9 1 23 1128 1150 1128 1150 0.98 21 21 3.5e-05 0.002 18.4 2.7 1 23 1155 1178 1155 1178 0.97
Sequence Information
- Coding Sequence
- ATGAAGTTTAACTTGGATGATACTTGTCGTACCTGTGGTGCGTTTGTCAGTGATGGAGTCTTGGTACCAATATTTGACCAAGTTGAAATCAGTACAGAAAATTCAGTTTTCCAAATATTTGAAGAGCTTGAATTGATGAACATCAAGATTGCAAAAGATGACAATTTACCTCAACAGATTTGCATTAATTGCATAAACGAACTGAAAAATATTCATTTATTTCGTGATAAATGTAAACTTGCTCAGAATGTACTGAGAGAGTATTTCATACAAAGTGTTGCCAAAACTGAAATCCACATCGATGATACAATTTCAGAGGAACATCAAATAATACCAGAAGACTTGATAAAAGAAGAAAAATCTTTAGATGATGTCCTCAATGAAAACGGAATTATTACTGCCGCATTGGAAAGTGAtaaagaatcaaattttgcagaagaatcaaattttgcagaagaatcaaattttgcaaaagaatcaaattttgcagaagaatcaaatttcgcagaagaattagaattAGAATTCTTAGATGACATAATATCCGAAAAAGAATCTAATCCTGTTGGTGAAGAAAATTCAAAGGTAATTATTGATGCATTTGAAAGTGATGAAGATTTGACGAAACTCGTTCGGACACCATATATTGAAGATGATGTATATTCAATTTTTAATATAGATGGAAAACCAAAGATAGCCAAATGCGAAAATTGTTTATATTTTGCATATAAGCCTGAAGAAGTATTTCATAACAGTATTGCTTGTGTTCCAATGGAAGATATATTTTCATGTTTTTATTGTTCGAAATCATATAAAGAAGAAAAAGAAGTTGTAAATCATATCCTTGAAACACATTCACAAGATCGTCCATATTTGTGTCCAATTTGTAATAAACCATTTGATACAAGTCAAAATTGTATTAAACATTTAAAAAAATTACACAGCGATATTAAAAAAGCTTATGTTTGTGATATGTGTTCTGGAAATTTTGAAACTGTAACAATTCTTAGACGGCATAAACGTACCATACATAATAATGGAAATTATGAATGCTGTTTATGTCATGAGAAATTTAAAAATATTTTTAGATATAATTAtcatattaaatcacattacaaagaaaaaccacttaaatatcatgaagcaatgcatacaggtgaaagacgatatcattgtaaagaatgtgataaatcattcaaaaatacatcatcgtattatattcataaaagaaagcataataaagaattgcattattgtgaaatttgtaagaaGGTTTTTTCAAGAGCAGGATTAAAAGCACACATGGAAAAACATAGGAACAAAGAAGACTTAGAAGATGAAATTCGATATCTATGTTCAGTTTGCGGAAAAGGTTTTCCAAAATCAAATTATTTAAATGGTCACCTTAAAAGCCATTTTTCAAATGAAAATTCTAATAAGAAAACAACAGTGACTACTAAAATAATTCAAAAATATGATTGTTCTATATGCGATGAAAAATTTTCTTCCTTATTAGGATTACAAAGTCATCTAAAAATGCATGATGAAAGTCGAAAATATAAATGTGATATATGTAGTATAAGATATAAACGAAAAGAACATTTAACACAACATATAAATTCAAAACATACAAAAACAAAAAAATATAATTGTTCATTCTGTAATAAAGTGTTCGTATCAAGTACATCGAAAAATTCTCATGAAAAATCACATAAACCGGGCGAAAATCGATGTTTATATTGTCCAAAAATATTTAAAACCGATGGAAGAGCAAGGCAACATGAGCATCATCAATCAAAACAGCATTCAGAAGAAGAACTAATGAAAGCAAGAGAAAAGATTCTAACTGAGAATTTAAAATCATGTACAAAGGAAAGTGACAATATTGAAGAGGAAATTATTAATGATGAAGAAATAAACGATGATGGAGTCTTGGTACCAATATTTGACCAAGTTGAAATCAGTACAGAAAATTCAGTTTTCCAAATATTTGAAGAGCTTGAATTGATGAACATCAAGATTGCAAAAGATGACAATTTACCTCAACAGATTTGCATTAATTGCATAAACGAACTGAAAAATATTCATTTATTTCGTGATAAATGTAAACTTGCTCAGAATGTACTGAGAGAGTATTTCATACAAAGTGTTATCAAAAGTGAAATCAACATCGATGATACAATTTCAGAGGAGCTTCAAATAATACCGGAAGACTTGATAAGAGAAGAAAAACCTTTAGATGATGTCCTCAATGAAAACGGAATTATTACTGCTGCATTAAAAAGTAATGAAGAAATAAACCCAAACGAAGAATCAAAACCCGCAGAAAATTCAGAATCCCGAAAAGATTTAGAATTCACAGATAACTCAAGATTTGGAGAAGAATCTAATCTTGTTGGTAAAGAAAATTCAAAGGTAATTATTGATGTATTTGAAATTGATGAAGATTTGAAGGAATTCGTCGGGGCACCATATGTTGAAGAAGAAGAAGAATATAAAATTTTTAATGCTGATGAAAAACCAAAGATAGCCAAATGCGAAAATTGTTTATATTTTGCATATAAGCGACAAGAATTATATCATAGGTCCAGTTGTACTGCAATGCAAGATATATTTTCATGTTTTTATTGTTCGAAATCATATAAAGAAGAAAAAGAAGTTGTAAATCATATCATTGAAACACATCCAAAAGGTCGTCCATACTTGTGTCCAATTTGTAATGAACCATTTGATATATATCAAAACTGTATAAAACATGTTATGGAAAAACATAATCATATTAAATTACCATTTACTTGTGATATTTGTTTGGGTTCTTTTAAACATTTACGAATGTTACGACATCATAAACGTATGGCACATGATACTGGAAATTATGAATGTTGTATATGTAATAAAAAATTTAAAAATATACATAGATTTGAGTATCATATCAAATcacataataaagagaaaccgtttaaatgtaaatattgtccaaaatcttttatgcaaacacatcatctaaaagatcatgaaacagtcaatcataatggcggaaaagcAAGAAGGTTCAGAAGAAAATTATATTGCTGTGATATTTGTGGAAAAGTTTTTACAAAGGCAGCATTAAAAAAGCATATAGAAAGGCATAGGAACACACCGGCGGAAGAAAATATGTCGAAACTCAAAAAAAAAGTAAATGGGAACGCATCTAATAAAGCAAATAATTATGATTGCCCATCATGCTCTGAACAATTTGCTTCGTTTTTAGGACTAGAAAAACATCTTAAAATGCATGATGAAAATCGAAAATATAAATGTGAATTTTGTGGTGTAGGTTATAAACGTAAAGAACATTTAACACAACATATAAATTCAAAACATACAAAAACAAAAAAATATTATTGTTCATTTTGCAATTACGTTTTTTTTTCATGTAATACAAGAAATTCTCATCAAAAATCGCATAGACCAGATGGTTTTCAATGCTCTTATTGTAATAAAACATTTAGATATAGTTCAGAAGCAAGAAGCCATGAGCGTTCACAACATACAAAAGAGAAACGACATATATGCTGGATTTGTAATATTGGATTCGATAGTTATGCTAAATATACATGTAATTAA
- Protein Sequence
- MKFNLDDTCRTCGAFVSDGVLVPIFDQVEISTENSVFQIFEELELMNIKIAKDDNLPQQICINCINELKNIHLFRDKCKLAQNVLREYFIQSVAKTEIHIDDTISEEHQIIPEDLIKEEKSLDDVLNENGIITAALESDKESNFAEESNFAEESNFAKESNFAEESNFAEELELEFLDDIISEKESNPVGEENSKVIIDAFESDEDLTKLVRTPYIEDDVYSIFNIDGKPKIAKCENCLYFAYKPEEVFHNSIACVPMEDIFSCFYCSKSYKEEKEVVNHILETHSQDRPYLCPICNKPFDTSQNCIKHLKKLHSDIKKAYVCDMCSGNFETVTILRRHKRTIHNNGNYECCLCHEKFKNIFRYNYHIKSHYKEKPLKYHEAMHTGERRYHCKECDKSFKNTSSYYIHKRKHNKELHYCEICKKVFSRAGLKAHMEKHRNKEDLEDEIRYLCSVCGKGFPKSNYLNGHLKSHFSNENSNKKTTVTTKIIQKYDCSICDEKFSSLLGLQSHLKMHDESRKYKCDICSIRYKRKEHLTQHINSKHTKTKKYNCSFCNKVFVSSTSKNSHEKSHKPGENRCLYCPKIFKTDGRARQHEHHQSKQHSEEELMKAREKILTENLKSCTKESDNIEEEIINDEEINDDGVLVPIFDQVEISTENSVFQIFEELELMNIKIAKDDNLPQQICINCINELKNIHLFRDKCKLAQNVLREYFIQSVIKSEINIDDTISEELQIIPEDLIREEKPLDDVLNENGIITAALKSNEEINPNEESKPAENSESRKDLEFTDNSRFGEESNLVGKENSKVIIDVFEIDEDLKEFVGAPYVEEEEEYKIFNADEKPKIAKCENCLYFAYKRQELYHRSSCTAMQDIFSCFYCSKSYKEEKEVVNHIIETHPKGRPYLCPICNEPFDIYQNCIKHVMEKHNHIKLPFTCDICLGSFKHLRMLRHHKRMAHDTGNYECCICNKKFKNIHRFEYHIKSHNKEKPFKCKYCPKSFMQTHHLKDHETVNHNGGKARRFRRKLYCCDICGKVFTKAALKKHIERHRNTPAEENMSKLKKKVNGNASNKANNYDCPSCSEQFASFLGLEKHLKMHDENRKYKCEFCGVGYKRKEHLTQHINSKHTKTKKYYCSFCNYVFFSCNTRNSHQKSHRPDGFQCSYCNKTFRYSSEARSHERSQHTKEKRHICWICNIGFDSYAKYTCN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -