Bdis012400.1
Basic Information
- Insect
- Bombylius discolor
- Gene Symbol
- -
- Assembly
- GCA_939192785.1
- Location
- CALNDV010001180.1:5988-9600[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.8e-09 2.4e-06 27.1 0.0 3 38 14 49 12 55 0.91 2 2 5.7 5e+03 -2.7 0.0 5 17 363 375 363 378 0.81
Sequence Information
- Coding Sequence
- ATGCCGAAAAAAGGTGTAAAAGAAAGACAGTGGCAGAAGGAAGATATGCAGAAAACCATTGAGGCCGTACGCAGGGAAGAAATGGGTGTTCTTTTGGCATCAAAAAAATTTGGAGTTCCTGCTACAACTTTGCGAAGAATGGCTAGGAGCGATAAAAGTACACAAGAACTTCTTTGTATTCCTTTAGGGCGAAAACCAGTCCTCAACAAAGATATCgaagatgatctagtagaatatctcctagaaatggaaagaagatactttggttatactcgacctgatgtttgctctatagccttccagttagctaaaagaaacaacataccaaattcgttttctctgcttaaacaaaaagctggcaaagattggttttatagttttctaaaaaggcataaggacaaaatttctgtgcgaaaaccagttgggacttctattcaacgagcacatgggttttcgaaggataatattgagcgattttttaatcttttggaagaaatatatgacgctcaccagtattcggcttcccgaattttcaacgtagacgaaacaggactttcaattgtacaaagcaaacaatcccatgtaattgaaagaaagggtaagaaacaaattggtgcaattacatctgcggaaagaggtagtttagtaaccgttgttacatgtatgagcgcaggaggtaatttcataccaccgttttttattttcccgagaaaaaaccggaatgacgccttcatgagagacgctcctcctggatctaaagctgcttttcatgcgtcaggatggattcagcttccggtttttactgattggttccagcacttcttggatgttgtaaaaccttctgaaagcgatccagttctacttattcttgacggccattacagccacactagaaatatcgatgtgattaatcttactcgcgaaaacgcagttatcatattgtctttgcctcctcattcgacacacaaaatgcaacccctcgatcggtccttcatgggtctacttaaaacttactaTAGTGATCAGATTCGAAGATTTATTCGAGAAACGGGAAGAAAAGTTTCATTATATGATGTTGCAGGACTTTTCACCAAAGCCTACCAGAAAGTTCAGTCAGGGAAAATAGCGTTCAGCGGCTTCAAATCTACTGGAATATACCCTTTCGATCGTCATATTTTTACAGATGCTGATTACTTAGCCGATGACTGCTTGCAAGACATGCTCAACACTAAGGAAAATGATTGTCCTCACATTGATCCACAACCTTCAACAAGCTCAGGATATGTAATGGCCTGGAATTTATCTCCTGCGCCCTGTTTAACAAAGGGCTCCAATCAAAAACGTAAATCACAGGCAAATGTTTTAACAACATCTCCTTATAAAAAATCATTAGAAGAAAGTTTAGAGAACATTAAAACTGCAGAAGCCACCAGAAAATCGAGGAAAAATAAAAAAAAGACGAGTAGTGAACCACGAAAACAACCACTTcttcgtagagcattcggtaatgatgctccatcggctaagactgtttacaattggttcaatgagttccaacgtgatagaaattacttgatggactcggctcgtgaaggtcgaccaaaaactgctgtggttcaagaaaacatcgatgctgttcgttcaatggtacaagaagacaatcgtgttacatacaatacaattcgtgcttcacttggtattggcatgagtcaaataaaaacaatcttgcatgagtatttggggtttacaaaaaatggacggtcaaacttggtgtacaatattgtgacaggtgacgaaagctggatttattcatttgaaccagaaagaaagcgtcaatctgctcagtggatgtttccaggtgatccaaaaccaacaaaagtgaagcaagcccgcagtgttgggaaaaaaatgattgcaacattttttgctaaaactggtcacatatccacaatagctgtggaaaaaaaaaccgtgacagcagaatggtatacaagagtttgtttaccaacagttttgcaaaaaataagagaaagacggccaagaggatccataacactgcatcatgataatgcacctcctcacacagctggagaaacaaaatcctttttagaacaaaataacgtcaacttactgggtcatcctccatacaatccagacctcgcaccgtgcgatttctttcttttcccccacataaagaataaaatggctggtttgaagttttcaacgcctgaagcagcgataacagcatacgatcagcttgtatatgaggtgaccgcgaatgaatggcaacactgttttaagcaatggtttcagagaatggaaaaatgcattaatgtaaatggtgaatattttgaaaaacaatga
- Protein Sequence
- MPKKGVKERQWQKEDMQKTIEAVRREEMGVLLASKKFGVPATTLRRMARSDKSTQELLCIPLGRKPVLNKDIEDDLVEYLLEMERRYFGYTRPDVCSIAFQLAKRNNIPNSFSLLKQKAGKDWFYSFLKRHKDKISVRKPVGTSIQRAHGFSKDNIERFFNLLEEIYDAHQYSASRIFNVDETGLSIVQSKQSHVIERKGKKQIGAITSAERGSLVTVVTCMSAGGNFIPPFFIFPRKNRNDAFMRDAPPGSKAAFHASGWIQLPVFTDWFQHFLDVVKPSESDPVLLILDGHYSHTRNIDVINLTRENAVIILSLPPHSTHKMQPLDRSFMGLLKTYYSDQIRRFIRETGRKVSLYDVAGLFTKAYQKVQSGKIAFSGFKSTGIYPFDRHIFTDADYLADDCLQDMLNTKENDCPHIDPQPSTSSGYVMAWNLSPAPCLTKGSNQKRKSQANVLTTSPYKKSLEESLENIKTAEATRKSRKNKKKTSSEPRKQPLLRRAFGNDAPSAKTVYNWFNEFQRDRNYLMDSAREGRPKTAVVQENIDAVRSMVQEDNRVTYNTIRASLGIGMSQIKTILHEYLGFTKNGRSNLVYNIVTGDESWIYSFEPERKRQSAQWMFPGDPKPTKVKQARSVGKKMIATFFAKTGHISTIAVEKKTVTAEWYTRVCLPTVLQKIRERRPRGSITLHHDNAPPHTAGETKSFLEQNNVNLLGHPPYNPDLAPCDFFLFPHIKNKMAGLKFSTPEAAITAYDQLVYEVTANEWQHCFKQWFQRMEKCINVNGEYFEKQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -