Basic Information

Gene Symbol
JARID2
Assembly
GCA_939192785.1
Location
CALNDV010000403.1:34501-41847[+]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 3.9e-22 6.1e-19 68.2 0.0 6 89 1749 1830 1744 1830 0.93

Sequence Information

Coding Sequence
ATGGTTATATCTGGTAAAAGAAAAAGGAGAGAATCACCAATAATAGATTCTTCTCCAGAATTACCAAAAAGGAATAAAGTACAGGCACAACGTAAATTTGCACAGGGACAATCTGCTCCCTCTTCAGCTGCATATTCATCAGTAATTGCATCTTCATCATCAGCAGCAGCATCAAATAATAATTCCCAGCCTGGTACACCTATAAGAGAGAATCGTGAACCACCTCCAGAATTAATAACACATAAAAGACCACGAACTGAAGATTTTTTGACATTTTTATGTTTTCGTGGTTCATCAGTTTTACCATCTCATTTAGATTTTTTAAATCAAAATAAAAATTCGACAACAGGAAGAACAGAAGAAAATGATACATCATCAATAACACCAACAGTAACAGAAGTGGTAAATAATGAATCTGGAGGAAATAGTCATTCTTTAAATGTAGCAAAAGCATCAACGAGTAAGGAGAAAAATGTTAATAATGCAACAAAGATTGATACAAGTAAAGATAAAAATCAAACAGTAGAAGAAACAATAACAGATGATACAAAAGCACAAAAAACATCATCTGATGTAATGTTATTTGCAGTGAGAAAAAGGGCCGATCAAGTTTGTAAAACAGCAACGAAAGTAAAGAGAAAGAACAAAGATACTAATCGTAGATCATTAAGAACACGAGGGAAAGCTGTAAATGCAACCCAAGCAAATAAAATTGATTTACAGAAGAATGAAAAAGATTGTGATGAAGAAAATATCAAAGAAGAAGCAGAAGAGACACCAAGTATTAAAACATTAGGTGGTAAATCATCAGAGGATAACGTAATAGAAACAAAACAAACAAAAAGAAAAACAACTGCAACATCATTAAAAGCAGCAAAATCAGCGAATACTAAGGAAAATAAAACCAATGAAAGCAAAAAGAACCTTGAAATTACACCAAATCTCAAAAGTACAAGTGAAACAGAAGATGATAGAAAAACTCCTTCTGAAAAAGCAAAACCAGCAACAACAAAAGGCAAATCTAAATCACGAGCGGCTTCTCCTCCATTAATTCCGTCTCCTCAACCGGGTGGACGAATGACAAGACGAAGAGCATTTTTCGAACCTGTAAAACCACTTTCAAAAACAGATGAAGATAAAACACAAGAAAAGCTTCCAGAAAAAACAGATTTTTCTTCAGACGACGAACAACCTTTAGCAACAGCTATTAAGACAACAAAAAGAGCTGGTAGATCTCCGAAAAAAACTGGTCGAGGTAAAAAGAAAGGTGATACTAATTCAAATTCTACATCAGAAGTAAAAAAACCTCCCACCTCTATTTCTTCATCACCTGCCCGAAAACGTAACAAAACTGCGACTGCCAAATCTATTGAAAGATTGTCGCCAGTAATAAAACAAAAAGAAATTGAAGAAAAATCTTCAGACAGAGCAGTATCTGAAAAATCTAATAAAAATTATAAAAAATCCAGAAAACGAGAAATAGAAATTCGTGCAGGATCAATAAGTCGTAAATCAGATACAAGTTCAAAAGTATCATCAAATAAACAAACAAGAAAAACGGCAAAAACTAATAAGAAATTAGTAAACACATTGAAATCGGCAAGTACGCCTGCCACAGATAAAGAAAGTGTTAACTCTTCTCCCAAAAGAAAAACAAAAAAATCATTCGATCCAAATTTTTCACAAAAATCACATTCACAAACAGATTTAAGTGAAAATGAAAATCGAACAGCTTCAAGACCAACAAGAAAAACAAAAGAGGCGGCTACTATTTATATGGAGTTAATTGGTCAAAAATTAAATCTAGATGATTTTGATGATGACGATAGCTCAATTGATAGTTATCCGGAGCTTCCAAATGCTAAGAAAACTCAAAAAATGGAAAATGAATTGAAAAAGAATGCAAATACCACGAAATCTGGTAAACAAACAAAAACAAAAGGAACAGGTGTTACAGGAAAAACAAAAGAAAAAGATACCGTTGCAAAAAACTACGTGGCCGCAGCATCAGCAAAAAACATTGCTGTTGCTGCTGACACCATAGAAACTACTTCAAAATCTTCTCTCAAACAAAAGGAATTTATATCTATCGATGAGAAATCGATGAATACAAGTACAACAACAACAGAAATGAAAAAAATAGAAAAAAGCTTTAGTGATTCAGACGATGAACCATTAGCGACAAAAGTAATTAACAAACCTAATGACCAAGATGAAACAACTGTAAGTGATGCTAGAGAATTTGATGTTATGAATGTTTCTCATAAAAAATCAAGTCTCATTGGAAAAATTAACGAATCTTTGAGTGCTTCTTTTAATTTACAGCAGCATCGAAAAAATTCAAACACATTCAATATAATAAATGAACCGAAACCAATTGTATTTGAAAAAGAAAAGAAACCAGAAAAAATATCTATCGAAACTAGTAAAGCCGATGAAAAGAATGAAAAAATCCAAAAACAACCAGCTACAAAATTAAAGAGTACATCACCATCAAAACAACAACAATCTCAGCTGCAGCATCAGCAAATAAATAAACAGGCAACAGTAACAACATTGGCAATTCCAAAAATAGAGAATATTTCACCACCAAAACCACAGCCACCACCACCATCAATGTTATCACCAACAACATCAGTTGCAGCCACTTCATTTCCTGTGCTAGATAGATATCCATCACCAAAAGTAAATCCATCATTTTTAACACCAAAATTTGATAGAAATCTAGCAGATCGACATCATCGTGCTGCTGTTGCAGCTTCTATTACTGATTTTAGTGGAAGTAGTGGTATTGTTTTTCCTTCAACCTCTTATATACCAAAAATTAGTGGTATGtcatccccagctagtaaatcagcagctgcagtagctgcagcaacggcaatggttgaaatgtcatcaattacaccaaaagcatcaccatcaccacaaaattcaacacaaagtaaaaaattggaaccagcagcatcaacatcaacagcatcaATTGATAATATTTTAGCTGCAAATTTAATGCCAAGTAAAGAAGAATCTGGAAAAATATTTGGAATTGCTAGTGTTAGTTTAGCCCAAAGTTCTGGACCAGATAATACAAAATGTACATTAGGCAAATGTGGATCAATACATAAACCAGTATTAGGCCCTGTAGTTCCTACAGAATCATATCTTGGTGATCAATTATCTGGAAAAGAACGTCGTAAAGCTAAAGTAAACATGACACATGAACAAATTCAAAAATGGTTAATTGAATGTTCATCAAATCCAGATGAAATTCAAGATGATCTTGATGATGATTTTGATCTACCATTAAAACCGATGACATTTCCACCATCTCCGTCTCCACCTTTAGGAAGTGGTTGTGGTGGGGGCTTTGGAAGTGATGAGAAAGAATCAACATCACAAAGTTCATCATCGAAAGCGACTAAAGATAATGTAAAAAGTGAAAGTGCATGGTCTTGTAAAGGTCCGTCATTAAAAGCCGTACCAGTCATGAAAGAAGAATCAAGATCATCGTCATTACAAAACGATAATGATAAAGCAGATAATTCATATGACATTCCACCTATTCCTGTGATTTCAAGTACGAAATCTAAACAGCAACAACAAAAATCAGAACAAAAACAACAAAAAGTAAAAGATACtccttcaactgatgtttcattgttagcagataaagtatcacaaaagacaGGAAAGCAATCATCAAGTACAGCAACAACTACAGTTAAAAACAATAAAACTCCTGTCGTTGAAAACTCTAAATCATCTCCTGTTAAGCCTCCAACATCATCGAAAACTCCTACTACTATCACCACCCCCACAGCTACACCTAAGCAACAGAAACGAGGTGCTAGTAACTCACCAACAAAATCCCAAAAAACTACATCTCAACAAAATAAACAGCAAAAGTCTTCTCCAACGACCACATCATCACCGAAGAAAACTCCAAGTCCTGCTGCTACTTCCACAGAACAAAAAAAGACGACTCCATCTTCTGCTGTAAAAAATTTTAAACGTCAACCAGTATACAATACAAAATTGTCTGAACCAGCATCAAAGAGAAAATCATTATTAACAACTAAAAACAGTTTTTCAGCTTTCTCTGCAGAAAATGAGACGAGTGTTTATTCATTCGACAAAGAAGACGATGTTCCACCTCCAGTGGCAAAACCTTTTAGACGTCATAGTAGGCGAGAATCTCATTATGAAGATAATTCGCAAGCAACGGTCGAAAAGTCTGCTACTCCTAAGACAGTCGATAATGAAAAATTGAAAGATAAAGAGGGAACAGCTGGTACAAAGGATTTTTCAAAAGACATGCAACAGAACAATAGCATTTCAGTAACATTGAGCCCAGAAGAGAATAGCAAATTGGTGAAAGTTAGTTTGGATGGCGTTGAAAGTCCAACAAAGCCGACGAGCAATACTACTTCTGAAAAAGCTCAAGTAAATGAATTTAGTGGTTTGGGGGATTCTGATTCTGAAGGACACACATACTACATTCCTCTACAAGGTATTGGACAAACAAGTTCTGCTGATGGTAAATCAGACCTTATACAAGGCGTTGCAGTAAAATTGGGTCGTGAGGGACCAGAGGGGCCTAATCAGCGTGTCATAATGCATGCAACATTAGTTACAAAAGCTCAAATGGGTGCAAATACAACGCCTTTACCAGAATCAATGAATGTTCATGAAATCGTTAAAAATTTACTATCATCATCTTCATCAAACAATAAAGAATCAACAGTAGCTGCTGCAACACCTGCAACTACATCTAAAAGTGTACCGATTGGTACCGTTCAACCACGTTTCAAATCAACTTCTGCAAACGCAAATCATCCGGACACACAACAAAATCCATCTGGTTCAGGTTTATCACGTGTTAATTCGAATTCTTCATTATTTTCTGGATCAAATAAATCACGAACAACATCGGCTGGACCGAAAATAAAAATAAAAGATGATACACCAATAAAAATGAGCAATAATACAGCATTTCCACGTCATGATGATCCATCACAAATGGTTGAAGCACCCATATTTCGACCAACTGAAAAAGAATTTTTAGATCCAATTGAATTTATTGAACGTATAACACCAATTGCTGCACGTTTTGGTATTTGTAAAATTATTCCTCCGGCCAGTTTTAAACCAGAATGTCGAGTATCAGATGACATGCGTTTTACAGCTTATAATCAATATGTTCATAAAATGTTACATCGTTGGGGACCAAGTGCAAAAGAATTAAGCGCAATTAAAAAATATTTAGCTACACAAAGTATTGCAATGACACATCCACCATGGATTGGAGGAATGGAAGTTGATTTACCTCGTTTATATCATACAGTACAGGAATTAGGTGGTCTAAAAGAAGTAATTGAAAAGAAAAAATGGGCAAGAGTTGCAGAAGAAATGTGCATTCCAAAATTAGCACAAGATCGTGTAACAAAATTAGATGATATTTATTGTAAATATCTTCTTCCATATGATACATTATCACCAGCTGAACGACAAAAACTATTCGATGAAGTTGAAGCTGATTGGGCAAAACGTGAAGCACGTGCACGACGAAATGCTGATCGTTGTGTTAATCTTGAAAGTGTAAGTAATGAAGATGATGGTGCTTCCAGTGAGGATGAAGAAGAATCCGAAGATGAATTAGATGGAGTTTCAATGGAATGTATAGTAAAAGGAAAATCGATGCCATTAAATCAATTCTTCCGAATAGCACGTAATACAATGGCAGTTTGGTTTAAGAATACAGAACCAACAGTTACAGATATTGAAGCAGAATTTTGGCGGCATGTTGCTGTTCGTGACAGTCATGTATGCGTTCATTCCGGTTCAATTGATTCGAGTGGTTGGGGTTATGGTTTTCCAACACCAGGGCCAAAAGGAAAAGGATCATCATGTGCTAAACATCCATGGAATTTAAAAGTTTTAACAAATAATCAAGGATCTGTATTACGTTCATTAGGACCAGTTATGGGTGTAACAGTACCAACACTTCATGTAGGAATGTTATTTAGTGCATGTTGCTGGTATCGTGATCCTCATGGTCTTTCATGGATTGAATATTTACATACTGGTGCAAGTAAAATTTGGTATGGTATACCAGATGAACAAAGTTCAAATTTTCGTTCAGCTTTAACAGCTCTTATACCGACACATTGTCAAAATAAAACAATATGGTTACCATGTGATACTGTTATGGTTCCACCACATATGTTAACAGATCGTGGTGTATCATTATGTCGAACTGAACAAAAACCAGGTGAATTTGTTATTATATTTCCACGTGCATACACTTCAAGTGTATCAACTGGATATGTGGTTTCAGAAAGTGTCTATTTTGCTACAAGTTCTTGGCTATCATCAGCTAAAGATGATTTTAAAGATATACATGATAGCTGTGAGCCAGCAATGTTCTCTTTGGAACAATTACTTTTTGCAATAGCATCTGATCAAAGAGTAACAAATGATATACTAACACAAATTTTACCAATGATGCAAGAAGTATATGAAAAAGAAGTCGCTGCAAGGCAACAATTAAAAGCTGGTGGTTGTACATCAACAGAAAAATTAGAACAAAATGTTCCATCAACAGGTAAATCAAAACAAAAAATTCAAAAAATATGTGAAGAACATGAATGTGATTTATGTAGAGCTAATTTATACATATCGATAGTTAAAACAGATGAAGGTAATGTATATTGTTTACAACATGCATTAAAAAATATAAATAACGGTAATGTTCCACCAAAACAATGTAAATTAATTTTTACATATAATATTGAAGATATTGAAAATTTAATTAAAAAAATTAATGAACGTTTAACACAAAAGAAACCAATTTGTGGTTCTAGTAATACGAGAAAAATTAAATGA
Protein Sequence
MVISGKRKRRESPIIDSSPELPKRNKVQAQRKFAQGQSAPSSAAYSSVIASSSSAAASNNNSQPGTPIRENREPPPELITHKRPRTEDFLTFLCFRGSSVLPSHLDFLNQNKNSTTGRTEENDTSSITPTVTEVVNNESGGNSHSLNVAKASTSKEKNVNNATKIDTSKDKNQTVEETITDDTKAQKTSSDVMLFAVRKRADQVCKTATKVKRKNKDTNRRSLRTRGKAVNATQANKIDLQKNEKDCDEENIKEEAEETPSIKTLGGKSSEDNVIETKQTKRKTTATSLKAAKSANTKENKTNESKKNLEITPNLKSTSETEDDRKTPSEKAKPATTKGKSKSRAASPPLIPSPQPGGRMTRRRAFFEPVKPLSKTDEDKTQEKLPEKTDFSSDDEQPLATAIKTTKRAGRSPKKTGRGKKKGDTNSNSTSEVKKPPTSISSSPARKRNKTATAKSIERLSPVIKQKEIEEKSSDRAVSEKSNKNYKKSRKREIEIRAGSISRKSDTSSKVSSNKQTRKTAKTNKKLVNTLKSASTPATDKESVNSSPKRKTKKSFDPNFSQKSHSQTDLSENENRTASRPTRKTKEAATIYMELIGQKLNLDDFDDDDSSIDSYPELPNAKKTQKMENELKKNANTTKSGKQTKTKGTGVTGKTKEKDTVAKNYVAAASAKNIAVAADTIETTSKSSLKQKEFISIDEKSMNTSTTTTEMKKIEKSFSDSDDEPLATKVINKPNDQDETTVSDAREFDVMNVSHKKSSLIGKINESLSASFNLQQHRKNSNTFNIINEPKPIVFEKEKKPEKISIETSKADEKNEKIQKQPATKLKSTSPSKQQQSQLQHQQINKQATVTTLAIPKIENISPPKPQPPPPSMLSPTTSVAATSFPVLDRYPSPKVNPSFLTPKFDRNLADRHHRAAVAASITDFSGSSGIVFPSTSYIPKISGMSSPASKSAAAVAAATAMVEMSSITPKASPSPQNSTQSKKLEPAASTSTASIDNILAANLMPSKEESGKIFGIASVSLAQSSGPDNTKCTLGKCGSIHKPVLGPVVPTESYLGDQLSGKERRKAKVNMTHEQIQKWLIECSSNPDEIQDDLDDDFDLPLKPMTFPPSPSPPLGSGCGGGFGSDEKESTSQSSSSKATKDNVKSESAWSCKGPSLKAVPVMKEESRSSSLQNDNDKADNSYDIPPIPVISSTKSKQQQQKSEQKQQKVKDTPSTDVSLLADKVSQKTGKQSSSTATTTVKNNKTPVVENSKSSPVKPPTSSKTPTTITTPTATPKQQKRGASNSPTKSQKTTSQQNKQQKSSPTTTSSPKKTPSPAATSTEQKKTTPSSAVKNFKRQPVYNTKLSEPASKRKSLLTTKNSFSAFSAENETSVYSFDKEDDVPPPVAKPFRRHSRRESHYEDNSQATVEKSATPKTVDNEKLKDKEGTAGTKDFSKDMQQNNSISVTLSPEENSKLVKVSLDGVESPTKPTSNTTSEKAQVNEFSGLGDSDSEGHTYYIPLQGIGQTSSADGKSDLIQGVAVKLGREGPEGPNQRVIMHATLVTKAQMGANTTPLPESMNVHEIVKNLLSSSSSNNKESTVAAATPATTSKSVPIGTVQPRFKSTSANANHPDTQQNPSGSGLSRVNSNSSLFSGSNKSRTTSAGPKIKIKDDTPIKMSNNTAFPRHDDPSQMVEAPIFRPTEKEFLDPIEFIERITPIAARFGICKIIPPASFKPECRVSDDMRFTAYNQYVHKMLHRWGPSAKELSAIKKYLATQSIAMTHPPWIGGMEVDLPRLYHTVQELGGLKEVIEKKKWARVAEEMCIPKLAQDRVTKLDDIYCKYLLPYDTLSPAERQKLFDEVEADWAKREARARRNADRCVNLESVSNEDDGASSEDEEESEDELDGVSMECIVKGKSMPLNQFFRIARNTMAVWFKNTEPTVTDIEAEFWRHVAVRDSHVCVHSGSIDSSGWGYGFPTPGPKGKGSSCAKHPWNLKVLTNNQGSVLRSLGPVMGVTVPTLHVGMLFSACCWYRDPHGLSWIEYLHTGASKIWYGIPDEQSSNFRSALTALIPTHCQNKTIWLPCDTVMVPPHMLTDRGVSLCRTEQKPGEFVIIFPRAYTSSVSTGYVVSESVYFATSSWLSSAKDDFKDIHDSCEPAMFSLEQLLFAIASDQRVTNDILTQILPMMQEVYEKEVAARQQLKAGGCTSTEKLEQNVPSTGKSKQKIQKICEEHECDLCRANLYISIVKTDEGNVYCLQHALKNINNGNVPPKQCKLIFTYNIEDIENLIKKINERLTQKKPICGSSNTRKIK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00234580;
90% Identity
iTF_00234580;
80% Identity
-