Basic Information

Insect: Bombus waltoni
Gene Symbol: -
Assembly: GCA_014737395.1
Location: JACXII010000055.1:1061437-1063668[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.003 0.23 11.8 0.3 1 20 70 89 70 91 0.95

2 14 0.015 1.2 9.6 1.1 3 23 133 154 131 154 0.96

3 14 5e-05 0.004 17.4 0.3 3 23 166 186 164 186 0.91

4 14 0.016 1.2 9.6 3.5 1 23 194 217 194 217 0.95

5 14 0.071 5.6 7.5 2.7 2 23 286 307 286 307 0.97

6 14 3.3 2.6e+02 2.3 4.4 2 23 373 395 373 395 0.96

7 14 0.13 10 6.7 2.6 1 23 488 511 488 511 0.95

8 14 0.049 3.9 8.0 2.9 1 23 526 549 526 549 0.95

9 14 1.7e-05 0.0013 18.9 1.5 1 23 555 578 555 578 0.95

10 14 0.014 1.1 9.7 0.8 3 23 585 606 583 606 0.93

11 14 0.0013 0.1 13.0 0.7 1 23 611 634 611 634 0.97

12 14 4.4e-08 3.5e-06 27.0 0.5 3 23 642 662 640 662 0.97

13 14 2e-05 0.0016 18.7 1.7 1 23 668 690 668 690 0.95

14 14 3e-05 0.0023 18.1 1.4 1 21 696 716 696 718 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.003	0.23	11.8	0.3	1	20	70	89	70	91	0.95
2	14	0.015	1.2	9.6	1.1	3	23	133	154	131	154	0.96
3	14	5e-05	0.004	17.4	0.3	3	23	166	186	164	186	0.91
4	14	0.016	1.2	9.6	3.5	1	23	194	217	194	217	0.95
5	14	0.071	5.6	7.5	2.7	2	23	286	307	286	307	0.97
6	14	3.3	2.6e+02	2.3	4.4	2	23	373	395	373	395	0.96
7	14	0.13	10	6.7	2.6	1	23	488	511	488	511	0.95
8	14	0.049	3.9	8.0	2.9	1	23	526	549	526	549	0.95
9	14	1.7e-05	0.0013	18.9	1.5	1	23	555	578	555	578	0.95
10	14	0.014	1.1	9.7	0.8	3	23	585	606	583	606	0.93
11	14	0.0013	0.1	13.0	0.7	1	23	611	634	611	634	0.97
12	14	4.4e-08	3.5e-06	27.0	0.5	3	23	642	662	640	662	0.97
13	14	2e-05	0.0016	18.7	1.7	1	23	668	690	668	690	0.95
14	14	3e-05	0.0023	18.1	1.4	1	21	696	716	696	718	0.94

Sequence Information

Coding Sequence: ATGCAATTATGGCAGCACGCCGATCCCAATGGCAAATTGCACTACTCGTTGGTGCCTATACTGGACGACAAGAAAATGCTAGTACTTTCTAAAGAAATTACCGAAGAAAACTCCAACATCTCCCTAACATGCGTGAAAATAGAGACCGATGAAGAAGAGAATAACTTGAAATCCTACGTCGACAGTTCGTTGCACTTATACAACTTTTACACGTGCGACAAATGCAATATGAACTTCCCTATTGAAAGCATGTTAAACAGGCACAAGATGTTCAACAAGTTTCACTCGTGGCTTCGTAAAAAACGATTGAAGTCTAGACATCGATCGAAACTATCTTCGGGAAAACAGACGAAGCCGGTACTGTCGCAGAAACCAAGGAAGAAAAGCAGATACGGTTGCACATCCTGCGAGTTTATCTGTATCAAGTGGTCCACGTTAATTGTTCATATTAGAAAGAAGCACAAGTCTGTAGTGAAAAAAGATGTAAAAATCTCGTGCATCGTTTGTAATAGAAAATTTGGTACTTGGTCTAATTTGAACAAGCACATGGAGGAACACAGAGACCGGAAGACGACTTACTTCACGTGTAATAGTTGCAGCTTCGTGTGCAAAAAAAGCAGCACTCTGATTTCTCATATAACGCAGAATCATCAGACGTTAAATGGCGAAGAGATCTCGAAGGAGAAGTGCAACGATGAACTTTGGAAGAAGGAAGAATCTAGAGAAACCTGTTTAAAGAAGCAAGATAAGGACAGTTCGACCGTCTCGAACACTCCGTTCGAGTCCCAATGCAACAGCGAACCTTCGATGGCTACTCGCGTCAACAAGAAACAAAGTGAAAAACCTGTCGAGGAACAATGCGATCTGTGTGACTTTAAATGTGCAAATAAAGGTACTCTATACTTGCATAAGCAGCAGCATGAGACAGACGTCGACGAAGAGTACTCGCGGAACGATGAACCTTCGAAGAAGAAAGAATCTAAAGAAATCTGTTTAAAGGAGCAAGATAAGAACAGTTCGATCGTCTCGAACGCTCCGTTCGAGTCCCAATGCAACAACAAACCTTCGATGGTCACTCGCGCCCAGAAGAATCAAAGTAGAAAGCCTATCGAGGAACAATGCAGTCTGTGTAACTCTAAATGTGCAAAGAAAAATAGCAGCCTATACGAGCATAAGCGGCAGCATAAGATAGAGGTCGACGAAGAGTACACGTGCAACGATGAACCTTCGAAGGAGAAAGAATCTAAAGAAAACTGTTTAAAGGAGCAAAATAAGGACAATTCGATCGTCTCGAACACTCCGTTCGAGTCCCAATGCAACAGCGAAACTTCGATGGTCACTCGCGCCCAGAAGAAACAAAGTATAAAGCCTGTCGAGGAACAATGCGATCTGTCTGACTTTACACCTGCAAATAATATATACTCGCGTAAGCGGCATTATACGATAAAAATCGGCGACGGGTTCTCGTGCAGCGAATGCTCATTTAAAACTTATAAAAGAGCGTCTTTATACTCGCATGTACAAAGGAAGCATAAGCCACCAAAATCTTGCTCGTCCGATGGTCAACCGCTATTATTTTATTGTACTCAATGTGACTATAAGAACAAGAATAGATACGAGCTGAAAGTACACGTGACCAGGAAGCATACGGAAGATTTTAAATTTTTTTGCGACACCTGTGGAAAGAAATACAAAGTGAAGGGCGACTTAACGAATCACATACGTTTCAGCCATAATGAACAACCGATTATCTGCGATGTTTGTGGGAAAACATGCCTGAACAGCAACTCGTTGTACGTACACCAGAAATTTGCTCATTATAAGGCGAAATACGAGTGTCAAATATGTAAAAGGAGAATGGTCAGTCAGAAAAATTTGGACACGCATATGGCTCGACAGCACGATAGGAGGGAGAGAGTGATTTGCGAAGAATGTGGCAAGTCGTTCTCCAGAAACAGTAGATTAAGTATACACATGAGAACACACACTGGCTACAAACCGTACACTTGTATCAGATGCAACAAATCGTTTGCACGTAAAACATCGTTGAAGCAACATATGTTGATTCACTCTGGTATCAGGGCTTACATTTGCGACGTTTGCGGCAAATCATTCACGCAGAAACCTGGATTGATCAGTCATAGAAAATGTCATCCTGGACCGCATCCTCCGCTTCCAAAAGTATTCATCGACCATATATTAAACGATGTGATGAATATTCAAGATCGTTAA
Protein Sequence: MQLWQHADPNGKLHYSLVPILDDKKMLVLSKEITEENSNISLTCVKIETDEEENNLKSYVDSSLHLYNFYTCDKCNMNFPIESMLNRHKMFNKFHSWLRKKRLKSRHRSKLSSGKQTKPVLSQKPRKKSRYGCTSCEFICIKWSTLIVHIRKKHKSVVKKDVKISCIVCNRKFGTWSNLNKHMEEHRDRKTTYFTCNSCSFVCKKSSTLISHITQNHQTLNGEEISKEKCNDELWKKEESRETCLKKQDKDSSTVSNTPFESQCNSEPSMATRVNKKQSEKPVEEQCDLCDFKCANKGTLYLHKQQHETDVDEEYSRNDEPSKKKESKEICLKEQDKNSSIVSNAPFESQCNNKPSMVTRAQKNQSRKPIEEQCSLCNSKCAKKNSSLYEHKRQHKIEVDEEYTCNDEPSKEKESKENCLKEQNKDNSIVSNTPFESQCNSETSMVTRAQKKQSIKPVEEQCDLSDFTPANNIYSRKRHYTIKIGDGFSCSECSFKTYKRASLYSHVQRKHKPPKSCSSDGQPLLFYCTQCDYKNKNRYELKVHVTRKHTEDFKFFCDTCGKKYKVKGDLTNHIRFSHNEQPIICDVCGKTCLNSNSLYVHQKFAHYKAKYECQICKRRMVSQKNLDTHMARQHDRRERVICEECGKSFSRNSRLSIHMRTHTGYKPYTCIRCNKSFARKTSLKQHMLIHSGIRAYICDVCGKSFTQKPGLISHRKCHPGPHPPLPKVFIDHILNDVMNIQDR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00230220;
90% Identity: iTF_00230220;
80% Identity: -