Bvos006682.1
Basic Information
- Insect
- Bombus vosnesenskii
- Gene Symbol
- -
- Assembly
- GCA_011952255.1
- Location
- NW:2540189-2544073[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00055 0.036 13.8 0.5 2 23 298 319 297 319 0.95 2 11 0.017 1.1 9.2 0.9 1 23 327 350 327 350 0.94 3 11 0.00016 0.01 15.5 3.3 1 23 407 429 407 429 0.98 4 11 1.4e-06 9e-05 22.0 1.5 2 23 479 500 478 500 0.97 5 11 1.3e-05 0.00082 19.0 0.8 1 23 505 528 505 528 0.96 6 11 3.5e-06 0.00023 20.7 0.3 1 23 566 588 566 588 0.98 7 11 5.9e-07 3.9e-05 23.2 0.9 1 23 598 620 598 620 0.96 8 11 1.7e-06 0.00011 21.7 1.2 1 23 626 648 626 648 0.99 9 11 8.5e-06 0.00055 19.5 0.2 1 23 654 676 654 676 0.98 10 11 6.4e-05 0.0042 16.8 4.6 1 23 682 704 682 704 0.98 11 11 0.00025 0.016 14.9 0.4 1 21 710 730 710 731 0.94
Sequence Information
- Coding Sequence
- ATGATTATTAAATATGCATCGAACAAGAGAAGTGTTCAAAAACATTGTCGGTTTCCTAAGAGGGGGAGATCGAGTCGTAGCTTGACTCCCAAATGCATTAAAATGGAAGTTTCGAAACACGAGCAATTAGTTGATACATATGAGAAAATTTATGGAGATGAATGCCGAATCTGTTTGAAAAAAGCTGTTGAAATTTGTGAACTTTTTAAAAATGGGGACGCTATTCCTCGAAAACTTATGGCCGTTGCTTCTGTACAGGTTGAAGAAGGAGATGGTTTACCACCAGTGATTTGCTTGCCTTGTAACCAGCGTTTAGATGCATCTTACGATTTTAAATGTCAAATACAAAATTCAGATGAGAAGCTTCGTCAAATTCTAAAGCTGAAATCCTCTTCTAACGATTCTGTTACCAACGCCAGCACCATAGTTACAGCAATAATCGCTGATGTGATATCTAGCGTAATATCTTCtgagaaagaaaatacagaaaaacaAGAAGTTTGTTCTACAAATTTCTGCAATGATAATTTTTGCTTTACGAAAGATGAAACAGCTTTTTGTCTCAATTCAGGGAAGAACTTGTTTTGTTACGAAAAAGAATCGTCACACAGTCGATTAAACGATACAGAGCAAAGAAAGAGCCtggaaaatgtaaatgtttataaaagtttattaGAGGATGATTCTGCAAGACAAatcgattcgataaaacaaGAGTTTGTTTTATTAGACGATCATATAGTACAAACTAAAGATGTTCCATTAAAGGGAGAAGCGAATATCGAAGAAAGTCAACAGATGTCAGAAGAGACATCAAAGACAGATAGTATTCaagatgatgatgatgatgatgatgatgaaaaACCATTAATTTCACGCACAACTAGATTACGCTGTACACGATGTATCAAGTCTTTTCGTACAAAAGTGGCCTTGCAGAGACACGCCATTGTACATAAACGTAAAATCAAATTACGTTATGTCTGTTATGTTTGCGATAAACAATATCCTACGTTTGCAAAAGTGAAAAATCATGTTGCAATTTGCCACGAAGCTCGCGataggaaagaaaatattcaacatAAGAGAATTAGTTATGAGCAAAATAAAGCAATCGCGAGTGTGCAAGATAAAAGGATTAATAGTAATGTCCAAgataaaagaacaaaaattcaaaaaaatgATGACTCTCCTAAGGAACAGCGAAAAAGCttaaaatttacttgcaaagTGTGTTCAAAACAATTTACTTATCAAAAATCTTTTATCACACACGCTAAAAGTCATCCAGAGTATAAAATGGAAGAATTGGATGATTCGTCTCAATGTTGGGTAAAAGAAAGATGTACAGAAACCGTGgtggaagaggaagaaaatgaagaagaggaagacgaagaagatGAGGAAGATGAAAACCTTCCTGCTGAAAGTTTACAGTGCACTCAATGTGGGAAGTTGtttgcaacaaaaagaaatcTTAAAAGGCATGTCTCCACACATAGTGGATTAAAATATACGTGCGAAACATGTGGTAAAGGATTCTCAAGAGtggataaattaaaagatcatGAACAATCAAAGCACAAGGCTGAATTATTCGACAATTCTGATTTGGATGATAAAGAGGACACAGACAATGTAGTTAATAAAGGTGACTGTttagaaggaagaaagaaagATCGTCACAATAGACCTCACAAATGTGCAATCTGCCCTAAATCGTTCGCGCAAGCGCAATCGCTAGCGAATCACATAGAACGTCATAAGCGGGTAAAAGAAACTCAAAAAAGATTTCTTTGCGAAGTCTGTAGCAAATGTTTTGCACAGAGTGGTTCTCTGGTTGCGCACATGCGTACACATACAGGAGTTAAGCCATACGTTTGTAATGTGTGCAGTAGAGCATTTACGAAGAGCACTTATCTACAATTGCATCTACGTACTCATAGCGGTGAAAAACCTTATATTTGCCAGTATTGTAGCAGGGCGTTTGCACGTGCTAACACATTAGCACGGCACATAACAATGCATACAGGGGAAGCAAAATATCATTGTCAGATTTGTACAAAGTCATTTAGAAGACTGACTTCGTTGAATGAACACACTTATACGCACACTGGGCAGAGACCATACGCTTGCAAAATTTGTACAAAGAGATATAACAATGCAGGGTCACTTTACGCGCATAGAAAGAAATGCAAGGCACAGCAATTATCTAACCCTGGGTTCGCGGTTTCCGTGGAAACCTGTACTGTATCAGAACAACAAGAAGTAGACGTTCCACAAGTTTTGATCTATTCCCACAGGAAATTAGTAGAGGACGCAACTGTTGGGCAAGTCACGCCCACACCACAGTACATGCTCGCAAATGTACACAATCAGAAGAATTTGGGATCAAATGTTATACAACCGTTTCCAGTGGATGATTCAAATGTTTATACAATTAATACGAAGCAATTTAAGAATCCctattatacaatttatccaaacatataa
- Protein Sequence
- MIIKYASNKRSVQKHCRFPKRGRSSRSLTPKCIKMEVSKHEQLVDTYEKIYGDECRICLKKAVEICELFKNGDAIPRKLMAVASVQVEEGDGLPPVICLPCNQRLDASYDFKCQIQNSDEKLRQILKLKSSSNDSVTNASTIVTAIIADVISSVISSEKENTEKQEVCSTNFCNDNFCFTKDETAFCLNSGKNLFCYEKESSHSRLNDTEQRKSLENVNVYKSLLEDDSARQIDSIKQEFVLLDDHIVQTKDVPLKGEANIEESQQMSEETSKTDSIQDDDDDDDDEKPLISRTTRLRCTRCIKSFRTKVALQRHAIVHKRKIKLRYVCYVCDKQYPTFAKVKNHVAICHEARDRKENIQHKRISYEQNKAIASVQDKRINSNVQDKRTKIQKNDDSPKEQRKSLKFTCKVCSKQFTYQKSFITHAKSHPEYKMEELDDSSQCWVKERCTETVVEEEENEEEEDEEDEEDENLPAESLQCTQCGKLFATKRNLKRHVSTHSGLKYTCETCGKGFSRVDKLKDHEQSKHKAELFDNSDLDDKEDTDNVVNKGDCLEGRKKDRHNRPHKCAICPKSFAQAQSLANHIERHKRVKETQKRFLCEVCSKCFAQSGSLVAHMRTHTGVKPYVCNVCSRAFTKSTYLQLHLRTHSGEKPYICQYCSRAFARANTLARHITMHTGEAKYHCQICTKSFRRLTSLNEHTYTHTGQRPYACKICTKRYNNAGSLYAHRKKCKAQQLSNPGFAVSVETCTVSEQQEVDVPQVLIYSHRKLVEDATVGQVTPTPQYMLANVHNQKNLGSNVIQPFPVDDSNVYTINTKQFKNPYYTIYPNI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00118159;
- 90% Identity
- iTF_01417854;
- 80% Identity
- -