Basic Information

Insect: Bombus vancouverensis
Gene Symbol: -
Assembly: GCA_011952275.1
Location: NW:1646249-1649668[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0018 0.11 12.3 3.6 2 23 222 243 221 243 0.95

2 12 0.042 2.7 7.9 4.7 3 23 248 269 247 269 0.94

3 12 0.00024 0.015 15.0 1.9 1 23 278 300 278 300 0.97

4 12 5.8 3.7e+02 1.2 0.2 2 10 307 315 306 328 0.82

5 12 0.013 0.81 9.6 1.1 1 23 334 356 334 356 0.98

6 12 0.00021 0.013 15.2 2.3 1 23 359 382 359 382 0.98

7 12 0.26 17 5.4 3.3 1 22 397 418 397 421 0.89

8 12 0.0019 0.12 12.2 0.4 1 23 435 458 435 458 0.98

9 12 0.014 0.89 9.4 2.7 1 23 464 488 464 488 0.97

10 12 0.0014 0.088 12.6 0.1 2 23 495 517 494 517 0.91

11 12 7.5e-08 4.8e-06 26.0 1.0 1 23 523 545 523 545 0.97

12 12 0.00023 0.015 15.0 7.4 1 23 551 574 551 574 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0018	0.11	12.3	3.6	2	23	222	243	221	243	0.95
2	12	0.042	2.7	7.9	4.7	3	23	248	269	247	269	0.94
3	12	0.00024	0.015	15.0	1.9	1	23	278	300	278	300	0.97
4	12	5.8	3.7e+02	1.2	0.2	2	10	307	315	306	328	0.82
5	12	0.013	0.81	9.6	1.1	1	23	334	356	334	356	0.98
6	12	0.00021	0.013	15.2	2.3	1	23	359	382	359	382	0.98
7	12	0.26	17	5.4	3.3	1	22	397	418	397	421	0.89
8	12	0.0019	0.12	12.2	0.4	1	23	435	458	435	458	0.98
9	12	0.014	0.89	9.4	2.7	1	23	464	488	464	488	0.97
10	12	0.0014	0.088	12.6	0.1	2	23	495	517	494	517	0.91
11	12	7.5e-08	4.8e-06	26.0	1.0	1	23	523	545	523	545	0.97
12	12	0.00023	0.015	15.0	7.4	1	23	551	574	551	574	0.96

Sequence Information

Coding Sequence: atGTCAGATATCAAATATCAACaatcaaaaatattatcaCAACATTCAGTTGAAGATCAGgaTAATTCAATACTACAGGTAGTACAAAAATCTCCTTCAGAAATTAATGAAGTTAATGTCGTTGATTATTTACAAGATTGTGTAAATAAACCTTTAACTAAAGATTCAGGAATACATTTATCTTCTACACCAATATATAATTCAAACATTGAGTCACaattgaaaaacaaaaatgattataaaaatagtatcgaatttgattttataaaaattgaaaacatttttttacaaaatataccAAATTCTCAAAATGAATTGAGATTTAAATGCATAGAGCAAAatcatttaaaaatgaaaaatgaatctGCAGAATCTATAACTCATTTAGATGAAAAGAATACTAAtagtattaaattaataaaaatgaataatgcAATTGATACAGAAGATGTAAAAAGTAACAATATTCCTGTTAAAGTAAAAAAGGCTTTTGTACttgagaaaaatgtttttactCAAGTTAAAGATAAATCGTATAACTTAGAAGTtaagaatgaaaatttgaatGATGAAAATAATGATCCTGAAACTAAATTTATAACATCAAATAATCagagtaaaattaaaatcaataatcTAGTTATGTTAaataaacaagttaaaacaTGTAGTCAATGTTCAATGACATTTAGATACAAAAGACATTTAGATCGGCATCTGGAAGGTcatcaaaaaaataattgttctcACTGCAGTGCAAAATTTGCCAGGCGTAAACACCTTGATATACACTTATTTCGTTCACATGGTGAAAGAGTAACAAAATATCCACATTCTTGTGATGTATGTTCCCGTAGTTTTCCTAaacgtattttattaaatcgtCATCGTGCAAAACACAACTATGAAAATGGCAAAGTTTGTTCAGATTGTGGAGAAATGTTGAAAGCAGAAGAAGATGATAAGGAACACAAAGAAAATCATTGCACACGAAAACAATTTAAGTGTAAAAGATGTTTACAAACATTTAGTATTGAACAAACATATATAGCTCATATCCAAAAtcatgataattataaatgtccAAAGTGTGATGTCACTTTTGCCTCCAAAAAGAAGGTGCATGAACATTATAAAATGGTGCATTCTTCAAAATTGAATCAtgataaaatatcaaataacgGTATTTACTTTTGTACTGACTGCAGGCatacttttttaaaaaagGATGATTATTCTCGTCATTTAGATTCTACATTACATCTTAATAAAGTAAACAGGGAAATATTCCAAAGAGACATTTTTACATGCCTAATTTGTtctaagaaattaatttcacaaAGAGCTCTCGATCAACATGTTAGACGTAtacataaagaagaaaaaagatttacATGCAATATATATGGTTGTACATTTCAGTGTGCAAGGAAATCAGACTTGGATAGACATAGACAATTACATGTAGAACAAAGAAATGTTGTATGTGAACAATGTGGTAAAACTTTTACTAGTGTTAGTATTCTTAATGATCATGTTCTCTATATACACAATAAGGAAAGACAATTTATATGTGAAGAATGTGGTAAAGCATTTAAACGAAATAGTTTATTAAAAAGACATAAATTATCTCATCAACAATATCGGCCATTTGCTTGTATGCAATGCAATACTGCTTTCAAGAGATCCCATCATCTTTCTCGTCATATGGAAACTTGTCATAGAATTACACttgagaagaaaaagaagGTTGTAAAACTTATGAAAACAGAAGATGGTCATCTTGTTCCAGTACCAGAGAAACCAAAAAAGCTTAAAcctaaaaaattaaaaatgaaagcAGGATCTAATAAAATCTTATTGTCAGATGACAAATCTGTTACTTTTCAAAACGTGgatattaataacaaatattctgATTCATATTTGGAAGCACAAACATTGCTTAATTCTAATGACTTATGTGAAAATTCACCATTGCCATTAGAACTTACAAATGTATTATCAAACACAGATTTTGCCCCTCAGGTTCTTTCATTAGTAGATATTAATGCAGAACAAATTGTGACTGTAGAAGTTACTACTCCAAAAACATTAATAATGAATGATCTTGTAGatcaatttgaaataaattgtaatgAAATATTGAATCTAACAAATTATCAAGATTTAGAACTTCAGTATGGAATTTCAAATACAGATCAAAATTTGTATGatcatataaattattctgaaTTATCATTAGGAACTGTTGAAGGAACATCATTTTTTGTGGATTCGAATATTAACAAACTAGATACTTTAccaatagaaaattatttgaatcaatcgtttccatcgtttttaaatttttaa
Protein Sequence: MSDIKYQQSKILSQHSVEDQDNSILQVVQKSPSEINEVNVVDYLQDCVNKPLTKDSGIHLSSTPIYNSNIESQLKNKNDYKNSIEFDFIKIENIFLQNIPNSQNELRFKCIEQNHLKMKNESAESITHLDEKNTNSIKLIKMNNAIDTEDVKSNNIPVKVKKAFVLEKNVFTQVKDKSYNLEVKNENLNDENNDPETKFITSNNQSKIKINNLVMLNKQVKTCSQCSMTFRYKRHLDRHLEGHQKNNCSHCSAKFARRKHLDIHLFRSHGERVTKYPHSCDVCSRSFPKRILLNRHRAKHNYENGKVCSDCGEMLKAEEDDKEHKENHCTRKQFKCKRCLQTFSIEQTYIAHIQNHDNYKCPKCDVTFASKKKVHEHYKMVHSSKLNHDKISNNGIYFCTDCRHTFLKKDDYSRHLDSTLHLNKVNREIFQRDIFTCLICSKKLISQRALDQHVRRIHKEEKRFTCNIYGCTFQCARKSDLDRHRQLHVEQRNVVCEQCGKTFTSVSILNDHVLYIHNKERQFICEECGKAFKRNSLLKRHKLSHQQYRPFACMQCNTAFKRSHHLSRHMETCHRITLEKKKKVVKLMKTEDGHLVPVPEKPKKLKPKKLKMKAGSNKILLSDDKSVTFQNVDINNKYSDSYLEAQTLLNSNDLCENSPLPLELTNVLSNTDFAPQVLSLVDINAEQIVTVEVTTPKTLIMNDLVDQFEINCNEILNLTNYQDLELQYGISNTDQNLYDHINYSELSLGTVEGTSFFVDSNINKLDTLPIENYLNQSFPSFLNF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00983796;
90% Identity: iTF_00233449;
80% Identity: iTF_00214585;