Basic Information

Insect: Bombus vancouverensis
Gene Symbol: -
Assembly: GCA_011952275.1
Location: NW:275870-279571[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 4.4e-07 2.8e-05 23.6 0.4 1 23 302 324 302 324 0.99

2 7 4.9e-05 0.0031 17.2 1.3 1 23 330 352 330 352 0.96

3 7 1.2e-05 0.00079 19.0 3.4 1 20 358 377 358 380 0.93

4 7 0.00022 0.014 15.1 5.3 1 23 386 408 386 408 0.98

5 7 0.00014 0.009 15.7 2.7 1 23 414 436 414 436 0.99

6 7 2.9e-07 1.9e-05 24.2 0.4 1 23 442 464 442 464 0.98

7 7 1e-05 0.00064 19.3 3.9 1 23 479 501 479 501 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	4.4e-07	2.8e-05	23.6	0.4	1	23	302	324	302	324	0.99
2	7	4.9e-05	0.0031	17.2	1.3	1	23	330	352	330	352	0.96
3	7	1.2e-05	0.00079	19.0	3.4	1	20	358	377	358	380	0.93
4	7	0.00022	0.014	15.1	5.3	1	23	386	408	386	408	0.98
5	7	0.00014	0.009	15.7	2.7	1	23	414	436	414	436	0.99
6	7	2.9e-07	1.9e-05	24.2	0.4	1	23	442	464	442	464	0.98
7	7	1e-05	0.00064	19.3	3.9	1	23	479	501	479	501	0.98

Sequence Information

Coding Sequence: ATGATGCCAATGTCTAATATATTTTGCTCAATATGCGATATGAAAATTGATCCTTCATCttctgtaaatatattttctacatcTTTTCCTCGTCAAGGAGAATTGTTAGTAAATTTTGTATCACAAGTACTTCGTATAGCTACTTTTGAATTACAAGACCCTTACATTTGTCTACAATGTTacaatttgtttcaaatgttaGAACAAGCACAGAAAACTGTTTTAAACATACGTTGTgagattttgaaaatatatcatGCTtgtgaaagaagaaaaaatgttaaacgaTCAATGTACGATGgtacaaaattgaatatcaGTACAAACATAGCATTAGAagcaaaaaaattatataatagtaaTGAGAACTTAAAGAAGGTATTGAATTTACAAAATGCTACTCAAGTAGAGGAAATAGTACAAGAACAATGTGTTCAAGATAATACAATACTGCAAAATATAAGTATTTCAAATACAAAAGCAAAGAAACACTTAAGAAAGGAAACAATCAATTATAATGAAGCAGATAGCACAAAATCATttgattataatatttatgatgacataaaagatgaaattttaaaaaatgatatatttcaCAATTCAGTGGCATTAACTAATAGTGGTAATACATGTAATATTAATTCACAAGGAAATACACATGCATTAAAAATTCATGTTGCAGAAAAAAGCTGTATTTCACTGACAGATCCTGAAAGTGAATCAAAAAATACTGTAAAAACAGAATCTACATTTTCTGacaatatattacaaatacaaaatgttgaaaatattataaaaataacagaaaatacTGTGAACACAACAgtgTCAGCAGTTGACCCAATAAAAATACCtataaaatcaataaagaTACCAAAGTATgatttaaaatcattaaaatattcttgtcCTATTTGTGGTAAAGTATGGAAAACATCGACTGAATTAAAAACACACATGAAAACTCATTCAACATTAAGACCATACATGTGTGAAAAATGTGGTCAGGcatataaacataaacatgCATTGGAAATACATGTTGGAATGCATAATGGAATAAATCCATTTCaatgtaatttttgtaaaaagtGCTTTACACAAAAAGGAGCACTTATGAGGCATTTACCAATGCATACCGGTGAAATGCCCTATCAATGTGAACTGTGTGGTAAAAGATTCATACACCATACATCATACAATATGCACAGATTATCACATAGTGGTAAAAAATCTTATAAGTGTCAAATGTGTGATTTGTCTTTGCTTTCAACATCTCATTTGAAAAGGCATATGCGAGTTCATACAGGTGAAAAACCATATAGCTGTACAGTGTGTGGAAAACGTTTTGCAGAACGATATAATTTGCTTGCCCATCAAAAAATTCATGATCCACATGAAAATAAGGcaaaaaaagttaaagaaaCGCAATTCCAATGTAATCATtgtaatttgatatttgaacAGAAAAAAAGCTTAAATGATCATATGAAGTATCATTCTAATGTGAATAGCGAATCTGATTTTAAACAATCACAATGTACACTTCTTCAAGTTGAACCAGAACATCATGAACTATCAAAAAAGGTAGATTCTGAACACAGTGTATTACAAGAAACTTGGATTCAAATGAATCGTTCTAAATTAGACATTATTGATAATCAAACAAGATTTGTACTTCTACAAAATTCTTTACCTCAGATTGACGAAAATTCCTTTGCAGTTACATTTAGTGACCAAAAAATATCCTTGGGAAGTACAAActataatacaaatttacatGTAATCATAGAACCATCAGATATATCACTTTTAAGCAATAATCTTCCTTCTATTGATAAAATGCATATGTGA
Protein Sequence: MMPMSNIFCSICDMKIDPSSSVNIFSTSFPRQGELLVNFVSQVLRIATFELQDPYICLQCYNLFQMLEQAQKTVLNIRCEILKIYHACERRKNVKRSMYDGTKLNISTNIALEAKKLYNSNENLKKVLNLQNATQVEEIVQEQCVQDNTILQNISISNTKAKKHLRKETINYNEADSTKSFDYNIYDDIKDEILKNDIFHNSVALTNSGNTCNINSQGNTHALKIHVAEKSCISLTDPESESKNTVKTESTFSDNILQIQNVENIIKITENTVNTTVSAVDPIKIPIKSIKIPKYDLKSLKYSCPICGKVWKTSTELKTHMKTHSTLRPYMCEKCGQAYKHKHALEIHVGMHNGINPFQCNFCKKCFTQKGALMRHLPMHTGEMPYQCELCGKRFIHHTSYNMHRLSHSGKKSYKCQMCDLSLLSTSHLKRHMRVHTGEKPYSCTVCGKRFAERYNLLAHQKIHDPHENKAKKVKETQFQCNHCNLIFEQKKSLNDHMKYHSNVNSESDFKQSQCTLLQVEPEHHELSKKVDSEHSVLQETWIQMNRSKLDIIDNQTRFVLLQNSLPQIDENSFAVTFSDQKISLGSTNYNTNLHVIIEPSDISLLSNNLPSIDKMHM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00233438;
90% Identity: iTF_00228189;
80% Identity: iTF_00214567;