Basic Information

Insect: Bombus vancouverensis
Gene Symbol: salm
Assembly: GCA_011952275.1
Location: NW:3464378-3534389[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 3.6e-06 0.00023 20.8 0.9 1 23 380 402 380 402 0.98

2 9 7.1e-06 0.00045 19.8 2.1 1 23 408 430 408 430 0.98

3 9 0.044 2.8 7.9 3.8 2 23 814 835 813 835 0.98

4 9 3.1e-08 1.9e-06 27.3 0.6 1 23 841 863 841 863 0.97

5 9 4.3e-05 0.0027 17.4 2.6 1 23 873 895 873 895 0.98

6 9 0.0015 0.095 12.5 1.9 2 23 1214 1235 1213 1235 0.97

7 9 0.026 1.6 8.6 1.0 1 14 1241 1254 1241 1255 0.92

8 9 4.1e-07 2.6e-05 23.7 2.1 3 23 1442 1462 1440 1462 0.96

9 9 1.4e-07 9e-06 25.2 0.9 1 23 1468 1490 1468 1490 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	3.6e-06	0.00023	20.8	0.9	1	23	380	402	380	402	0.98
2	9	7.1e-06	0.00045	19.8	2.1	1	23	408	430	408	430	0.98
3	9	0.044	2.8	7.9	3.8	2	23	814	835	813	835	0.98
4	9	3.1e-08	1.9e-06	27.3	0.6	1	23	841	863	841	863	0.97
5	9	4.3e-05	0.0027	17.4	2.6	1	23	873	895	873	895	0.98
6	9	0.0015	0.095	12.5	1.9	2	23	1214	1235	1213	1235	0.97
7	9	0.026	1.6	8.6	1.0	1	14	1241	1254	1241	1255	0.92
8	9	4.1e-07	2.6e-05	23.7	2.1	3	23	1442	1462	1440	1462	0.96
9	9	1.4e-07	9e-06	25.2	0.9	1	23	1468	1490	1468	1490	0.98

Sequence Information

Coding Sequence: ATGTCACGGAGAAAGCAAGCTCGACCAAGCCGTGCCCACCTCGAGGAGGATCTTGTCCACGGCCCTCTGCTCATCAACGCCGTACGAAACGTGAACCAGACCCGTGAAGACAATGAGTTTACGTCGGATGGCGAGGAGAGTGGCGGTGGAGGAGTCGGCGGAGACGAAGCGGTGGACCTCACGGCATCCAGGTGCCATCAGGGCGAGGAGGACGACAAGGATCAGGAAGACGCTTTGGAGGAGGATGAAGAGGAAGGCGTGGACGAGCAGGACGAGCAAGAGGACGACGAGGAAGGATCGCGCAAGCAGATGCATCACAGGCAGGATGCGGAGAACAACAACAATTTCGTAGAAGGTGGCGCCGCTGGCAGCCTGTTCCCGCCCGCTGGAACTAGTCACGTCACCCTGGAAGCTCTGCAGAACACGAAAGTGGCGGTGGCTCAGTTCGCGGCGACGGCGTTGGCCGGAGGCGCGGACAGCGAGGCCGCTCTGCAGGACTTGGCGTTGCTTCAAAGCACCCTGTACACCTTGCAACATCAGCAAGTGTTTCAACTGCAGCTGATCAGCCAACTGCAGCAGCAACTGTCCATCACGCACAATCAGTCGGTGCAGCAGCAAGGACCGGGTGAGCCGTCGGATAGCAAGGAGATATGCCCGTCGCCGATCATCCAGCCTAAACCTCTGTCGAGCCTAACGTCGCCTCCGTCGTCGCGTCCACCGAGTCATCGGCAAACCTCGCCGGCTCCCGTGACGCCGAACCTGGCTCAGGAAAGACCGACGCCGACCAGCAGCGCGTCCCCGTTGAATATCCCGTTGGCCTCGTCGAACGCGACCGGCACGACCTCGACTACCAGTACCAGTAGCCAGATGCCGATGTCTCATCAGATACCGCCTCTCTGTTCGATCAGTTCTTCCCTAGCTTCGTCCATCATAACCAACACCGATCCGCCACCGTTGCACGAGCCGAACACCCTGGAGATGCTGCAGAAGAGAGCGCAGGAGGTGCTGGACAACGCGAGCCAGGGACTTCTGGCGAATAACCTGGCCGACGAGCTGGCGTTCAGGGGTGGAAAAGGCTCCCGTCTCTCCCCGTACGATTCAAAGTCCGGTAGCGGTCGCGGCGAGCCATTCTTCAAGCACCGATGCCGGTATTGCGGCAAGGTGTTCGGCAGCGACTCGGCGCTTCAGATCCACATACGATCGCACACAGGTGAGCGACCCTTTAAATGCAACGTCTGCGGCAGCCGCTTCACCACGAAAGGGAACCTGAAGGTCCACTTCCAGAGGCATACGGCCAAGTTTCCACATGTTAAGATGAATCCGAATCCCGTTCCGGAACACCTGGACAAGTACCACCCACCCTTGCTACAACAAATCGCCTCCGGTCAGAGACCGATGCCGTCACCGCCGCCGCCACCACCTTCTCACCATCCCTCTTTTCACCCGGCGGCAGCGCACGGTTTCTTACCTCCTCAGCCGCCCTTGCCGCTCAGTTTAGCCCTTCCCGGTATGCCACCCTTGTACAGATCGCCGGTTGTCGCTCATCGGGACGATCAGGACGTGCCGGAGAACCTGAGCAAGCCCGTTACCACTGCCCCGACCACCTCGCCACATTCCCCCGCGGTTGTGTCCAATTCTCGTCATTCCTTTCACGACAATCACCATCACCACCATCACCACCACAaccaacaacaacaacaacaacaacaacaacaacaacatcATCATCAAAAGCAGCAGCTCGAGCAGAGGGACGAGATGAAGTTGGAGCAGCGATCGCCTATGCAGGAACAATACCAGCGACAGCAACGATCTATGAGCCAGGAACCGACCGAGAGGATAACGCCGAAGAAAGAGCCGGAGGAGGCCGAGGAGCCCACGGAGGAGGAGAGCGAGGATTTCGAGGAGACGACAAGACGGTATTTAAATTCACCCCAATCCTCCGTCAATCCACCCTCTCAACCGCAGACTTACGAAGACTGTAGCATGGACAGTAAGATGAGCGGTCGACTGGAGGGAGACGGCGACATGGAAGTCGACGAGGAGATCGAGGAGCAGCCGGAGAATTTGTCCGGTCGTGGAACCATCAATCGTTTGCCGCAACACGTTGTCGCGTACCCCGGCGCCTCCCCTGCGAGTAGTAGCGCGAGCAGTGGAAGCCTTCAAACATCGTTCGCGGGAATTCTGTTCCCAGGGCCACCGGCGCACCATCAAATACCCCATCACGCCGCACCACCAGCCGTAAACGCGTCCGCCGCCGTCTCTACCAACGAGATGATCGATCCGGCCAAGGATCCGGCTATCTATTCCAGTCTGTTGCCACGGCCGGGCAGCAACGACAACTCCTGGGAAAGTTTGATCGAGATAACCAAGACCTCGGAAACGTCCAAGTTGCAGCAGTTGGTCGACAACATCGAGCACAAGCTGTCCGATCCTAACCAGTGCGTTATCTGCCACCGTGTGCTGTCCTGCAAGAGCGCACTGCAGATGCATTACAGGACTCACACGGGCGAGCGTCCGTTCAAGTGCAAGATCTGCGGCCGGGCGTTTACCACCAAGGGTAACTTAAAGACTCACATGGGCGTCCACAGGGCGAAACCGCCGCTCAGAATGTTGCATCAGTGCCCCGTTTGTCACAAGAAATTTACCAACGCGTTGGTGCTTCAGCAGCACATACGATTGCACACCGGCGAGCCGACGGAGCTCAGTCCGGAGCAAATTCAAGCCGGCGAGGTGAACGAGTTCCCGCCGGGTTATCCGCACCATCCGTTGGCGTCGTTTCTTCCTCAAGGCTTTCCACCGATTCACCCCGCTGGACCTGGATTCCCGTTGAGCTTTCCTCCAACTCGACAACAGTTGGAGAGACAGAGTCAAGAAAACGACATCGACGCGAAGGACGAGCCTCAACAGCAGCACCTTCAGCAACAACAGCatcagcaacagcagcagcagcaacagcagcaacaacagcagcagcagcagcagcagcaacagcatCAGGCAAGGTACGCGGAGGAGCACAGCGAGGAAGCGGACGACCAGGAGGACGAGGAGGACGATCGCAGAGAGGAGGACGAGAGATGCAATCGCGACGCGAGTCGCGGCGACCTAGAGGACGAACAGGATCGCGAGAGCGAAGAGAACGATCACAAGGACGTGTCTTTGCCCAGTTTCTCGACCTCGCTGGCCGCTCTCGAGAATCAGGTGCGAACGATCACGACGACAGCCGCGTCGACGATAGGAAACGCCGCCAGGTCGCCGCCGTTTCACCGTTACAACGGCAGCGAGAAGAGCAACAGTCCGCCGAATCCTGGCGCGCCGTTAGATTTGACGCCTCGGGCATCGTCCACTCCGGCCTCGGTAGCGTCAGTGCCAACGCCACCTCCGCAAACCACCACCCACCATCCGCATCCGTTCGGCATGTTCGCAGGCCTGCTGCAAGCGGTCTCATCGTCGCCGTCTACCAGCAGCATCGGTTCGTCGAGCATAAACAGCGTCAGCTCGATAAACGCCGTGACTCCTGGAAGCGGCGCCGCCGGGCCCTTGGCTTCCCTGACCACGTCAGCCGTGTTGGCTGCTACGTCCACCTACAACCCGCTCGGCCTGGCTGTCGGAGGGCCAGCAGTGCGTGGAAACACCACGTGTAATATCTGCTACAAGACATTTGCGTGCAACTCCGCGCTGGAGATTCATTACCGGAGCCACACGAAGGAACGACCTTTCAAATGCAGCATATGCGACAGAGGCTTTTCCACAAAGAACGATGGTTCCGGGCAGCAAGCATGCATCTGTGCGTCTCAACCGTTGCCCGCTAACAGTTCGATCACTTCACCCGATCCTCAATTTGGATCAGCGTGCGCCAGTAGTCGAGAAAAAGCGAAACGCAGGCGGCGGCGGCGACCTGAGGATCGGAAGAACCGGGGGCGGAAAGGAGCCGGAGGGGGGCGGGGGCTGACGCCTGTCTATCCTGCCATCCGCCTACCCCCGCTGATGTCGCCCGCCCTCGGACTTCTACCCTCGGCGCACGGCCTCCTGGGGAACATGAAGCAGCACATGCTGACTCACAAGATCCGCGACATGCCGCCGCATTTGTTCAGCGACTCGAAGCAGCAACACCAACAGCAATCTCAGGAGCACGAAACCTCGAGAAGTCCGATGTGCGCGGAGGATTCGAGCTTaccgccgccgccgccaccgcccCCACCGCCTCCTCCGCCGATGCCTCCGACTTCGATGGAACAAAGCATCGCCGTGAAGAGATCGCCGCCAGAGGGGGAGCTGCCAGCACCAAAGAGACCAGCCAGCGTGCCGAGCAAACACTTGTGCCAGATTTGCAATAAGAATTTCTCCTCATCTTCGGCGCTGCAGATCCATATGAGAACTCACACAGGCGACAAACCGTTCCGATGCACCGTCTGCCAGAAGGCCTTCACCACCAAGGGCAATCTCAAGGTACACATGGGTACTCATATGTGGACCAACGGAGCTTCTCGACGAGGTCGACGAATGTCCCTGGATCTGCCTCCCCTACCCATCACTCCCAAGGACTCGGAGTTTCTGCAGCGTCGGCCGGATCTTTTCTATCCGTATCTACCCGCGCCGTTCCTTAACGGCGTGCAGCAGAAGCTGAACGAGATCTCGGTGATTCAAAGCAACAACGGTCTACCGAGTCACTCCGTGGCCGCTGGCAAGTACGCTGGATTATTCGGCTCGGTGTACGCGGCTGGAGCTGGCTTCCCCCTCGACAAGCAACCGATGGTGGCAGCGAACAGTAACGGGCCGCTGCTCGACGGCAAGTCCTCGATACCGTCTGGATCCATGCTGTTTCAAACGCCATCGCCCTCGCACTCGCCAGGCACGCCGAGTTCCAACGGAAGCAATCAGAGCAGCGCGAACGTGTCCTCGTGGACAGGGGACGCTCTTCAGCATCATTTCGACAGGGAGCCGCCGACCAGGTCGGAGGGCAACTCGACTCCACCTTCGGCTCGACTTCCGCCGCCCGCGGCGGCCAGGGGCGAAGGACTGGCCACGTGA
Protein Sequence: MSRRKQARPSRAHLEEDLVHGPLLINAVRNVNQTREDNEFTSDGEESGGGGVGGDEAVDLTASRCHQGEEDDKDQEDALEEDEEEGVDEQDEQEDDEEGSRKQMHHRQDAENNNNFVEGGAAGSLFPPAGTSHVTLEALQNTKVAVAQFAATALAGGADSEAALQDLALLQSTLYTLQHQQVFQLQLISQLQQQLSITHNQSVQQQGPGEPSDSKEICPSPIIQPKPLSSLTSPPSSRPPSHRQTSPAPVTPNLAQERPTPTSSASPLNIPLASSNATGTTSTTSTSSQMPMSHQIPPLCSISSSLASSIITNTDPPPLHEPNTLEMLQKRAQEVLDNASQGLLANNLADELAFRGGKGSRLSPYDSKSGSGRGEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHTAKFPHVKMNPNPVPEHLDKYHPPLLQQIASGQRPMPSPPPPPPSHHPSFHPAAAHGFLPPQPPLPLSLALPGMPPLYRSPVVAHRDDQDVPENLSKPVTTAPTTSPHSPAVVSNSRHSFHDNHHHHHHHHNQQQQQQQQQQQHHHQKQQLEQRDEMKLEQRSPMQEQYQRQQRSMSQEPTERITPKKEPEEAEEPTEEESEDFEETTRRYLNSPQSSVNPPSQPQTYEDCSMDSKMSGRLEGDGDMEVDEEIEEQPENLSGRGTINRLPQHVVAYPGASPASSSASSGSLQTSFAGILFPGPPAHHQIPHHAAPPAVNASAAVSTNEMIDPAKDPAIYSSLLPRPGSNDNSWESLIEITKTSETSKLQQLVDNIEHKLSDPNQCVICHRVLSCKSALQMHYRTHTGERPFKCKICGRAFTTKGNLKTHMGVHRAKPPLRMLHQCPVCHKKFTNALVLQQHIRLHTGEPTELSPEQIQAGEVNEFPPGYPHHPLASFLPQGFPPIHPAGPGFPLSFPPTRQQLERQSQENDIDAKDEPQQQHLQQQQHQQQQQQQQQQQQQQQQQQQQHQARYAEEHSEEADDQEDEEDDRREEDERCNRDASRGDLEDEQDRESEENDHKDVSLPSFSTSLAALENQVRTITTTAASTIGNAARSPPFHRYNGSEKSNSPPNPGAPLDLTPRASSTPASVASVPTPPPQTTTHHPHPFGMFAGLLQAVSSSPSTSSIGSSSINSVSSINAVTPGSGAAGPLASLTTSAVLAATSTYNPLGLAVGGPAVRGNTTCNICYKTFACNSALEIHYRSHTKERPFKCSICDRGFSTKNDGSGQQACICASQPLPANSSITSPDPQFGSACASSREKAKRRRRRRPEDRKNRGRKGAGGGRGLTPVYPAIRLPPLMSPALGLLPSAHGLLGNMKQHMLTHKIRDMPPHLFSDSKQQHQQQSQEHETSRSPMCAEDSSLPPPPPPPPPPPPPMPPTSMEQSIAVKRSPPEGELPAPKRPASVPSKHLCQICNKNFSSSSALQIHMRTHTGDKPFRCTVCQKAFTTKGNLKVHMGTHMWTNGASRRGRRMSLDLPPLPITPKDSEFLQRRPDLFYPYLPAPFLNGVQQKLNEISVIQSNNGLPSHSVAAGKYAGLFGSVYAAGAGFPLDKQPMVAANSNGPLLDGKSSIPSGSMLFQTPSPSHSPGTPSSNGSNQSSANVSSWTGDALQHHFDREPPTRSEGNSTPPSARLPPPAAARGEGLAT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00118182;
90% Identity: iTF_00232761;
80% Identity: -