Bvan003572.1
Basic Information
- Insect
- Bombus vancouverensis
- Gene Symbol
- -
- Assembly
- GCA_011952275.1
- Location
- NW:1768913-1776734[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00027 0.017 14.8 0.4 1 21 70 90 70 91 0.95 2 13 0.018 1.1 9.1 1.8 3 23 133 154 131 154 0.96 3 13 0.0012 0.076 12.8 2.1 5 23 168 186 165 186 0.93 4 13 0.029 1.8 8.4 2.6 1 23 194 217 194 217 0.94 5 13 0.022 1.4 8.8 5.2 2 23 285 306 285 306 0.98 6 13 0.0034 0.22 11.4 3.9 1 23 314 337 314 337 0.97 7 13 0.01 0.66 9.9 2.1 1 23 352 375 352 375 0.95 8 13 8.6e-07 5.5e-05 22.7 1.2 1 23 381 404 381 404 0.96 9 13 0.0088 0.56 10.1 0.8 3 23 411 432 409 432 0.94 10 13 0.00015 0.0092 15.7 0.5 1 23 437 460 437 460 0.97 11 13 1.3e-08 8e-07 28.5 0.4 2 23 467 488 466 488 0.97 12 13 1.5e-07 9.5e-06 25.1 0.8 1 23 494 516 494 516 0.98 13 13 2.6e-07 1.7e-05 24.3 0.1 1 23 522 544 522 544 0.98
Sequence Information
- Coding Sequence
- ATGCAATTATGGCAGCACGTCGATCCTGATGGTAAATTGCACTACTCGTTGGTGCCTGTATTGGACGACAAGAAAATGTTAGAACtttcgaaagaaattatcGAAGAAAATCCCAACATCTCCCTAACATGCGTAAAAATGGAGACCGATGAAGAAGAGAATAACGTAAAAACCTACGTCGGCAGTTTGGTGCACTTATACAACTTTTACACGTGTGACAAGTGCAATATGAAGTTCCCTATGGAAAGTATGTTAAACAGACACAAGATGTCCAACAAGTTGAACTCGTGGCTTCGTAGAAAACGACTGAACTCTAGACATCGACCGAAGGTATCTTCGGGAAAACAGATTAAACCGATGCAATCGCAGAAACCaaggaagaaaaggagatACGGTTGCACATCCTGTGAGTTTATCTGTAGCGAGAGGTCCATGTTAAACGTTCATATTAGAAAGAAACACAAGTCTGTAGTcaaaaaagatttaaaaatcttGTGCATCATTTGTAACAGAAAATGTGGTACTCGGTCTAATTTGAAGAAACACATGGAGGAACACAGAGACCGGAAGACGACTTACTTCACGTGCAATAGTTGCAACTTCTTGTGTAAAAGAAGCGGCACTCTGATTTCTCATATAACGCTGAATCATCAGACGCTCAATAGCGAGGAAATCTCAAAGAGATGCAACGATAAACCTTCAGAGAAGGAAGAATCTAGAGGAACCTGTTTAAAGGAGCAAGATAAGGACAGTTCGACTGTCTCAAGCACGCCGTTCGAGTTCCAATGCAAGAATGAACCTTCAGTGGCCACTCGCGCAAGCAAGAAACAAAGTAAAAAGTCTGTCGAGGAACAATGCAATCTGTGTGACTTTAAATGTGCAAAGAAAAGTACGCTATACTCGCATAAGCGACAGCATAAGATGGACATCGGCGAAGAATACTCGTGTAACGAATGTTCATTTAAGACTTATAAAAAATCGTCTTTATACTCGCATATAAAAAGGAAGCATAAGGTACCAAAATCTTGCACGTCCGATGGTCAACcgcaattattttattgcacTCAATGTGACTATaagaataagaataaataCGAACTAAAAGTACACGTGGCCAGGAAGCATACGGatgattttaaattttcttgcGAGACTTGTGGAAAGAAATTCAAAGTAAAAGGCGATTTAACGAATCACATACGTTTCAGTCATAAAGAACAACCGGTTATCTGTGATGTTTGTGGAAAAACGTGCCTGAACAGCAACTCATTGTACGTACACCAGAAATTTGCGCATTATAAAGCAAAATACGAGTGTCAAGTATGTAAAAGGAGAATGGTCACTCAAGAAAATTTGAACGAGCATATGATCCGACAGCACGAGAAGAGGGAGAACGTGGTTTGCGAAGAATGTGGCAAGACGTTCTCCAGAAACAGTAGATTAAAGGTACACATGAGGATCCACACTGGTGACAAACCGTACACTTGTACCATATGCAACAAATCGTTTGCACGCAGAACAGCGTTGAAGCAACATTTGTTAATTCATACTGGCATCAGGCCATACGTTTGCGATATTTGCGGCAAAGCATTCACGCAGAAGCCTGGATTGATCAGTCATAGAAAATCTCATCCTGGATCGCATCCTCCGCTTCCAAGAGTGTTGATCGACCATATATTAAACGATGTGATGAATAATTGA
- Protein Sequence
- MQLWQHVDPDGKLHYSLVPVLDDKKMLELSKEIIEENPNISLTCVKMETDEEENNVKTYVGSLVHLYNFYTCDKCNMKFPMESMLNRHKMSNKLNSWLRRKRLNSRHRPKVSSGKQIKPMQSQKPRKKRRYGCTSCEFICSERSMLNVHIRKKHKSVVKKDLKILCIICNRKCGTRSNLKKHMEEHRDRKTTYFTCNSCNFLCKRSGTLISHITLNHQTLNSEEISKRCNDKPSEKEESRGTCLKEQDKDSSTVSSTPFEFQCKNEPSVATRASKKQSKKSVEEQCNLCDFKCAKKSTLYSHKRQHKMDIGEEYSCNECSFKTYKKSSLYSHIKRKHKVPKSCTSDGQPQLFYCTQCDYKNKNKYELKVHVARKHTDDFKFSCETCGKKFKVKGDLTNHIRFSHKEQPVICDVCGKTCLNSNSLYVHQKFAHYKAKYECQVCKRRMVTQENLNEHMIRQHEKRENVVCEECGKTFSRNSRLKVHMRIHTGDKPYTCTICNKSFARRTALKQHLLIHTGIRPYVCDICGKAFTQKPGLISHRKSHPGSHPPLPRVLIDHILNDVMNN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00218582;
- 90% Identity
- iTF_00219950;
- 80% Identity
- -