Btur015190.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Bombus turneri
Gene Symbol
-
Assembly
GCA_014825825.1
Location
CM026110.1:2103475-2112655[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 6 0.00011 0.0097 16.4 0.9 2 23 188 209 187 209 0.91
2 6 2.4e-05 0.0021 18.5 0.4 1 23 215 237 215 237 0.97
3 6 8.5e-06 0.00076 19.9 2.3 1 23 243 265 243 265 0.99
4 6 2.6e-05 0.0023 18.3 4.4 1 23 271 293 271 293 0.97
5 6 0.0016 0.15 12.7 1.5 1 21 299 319 299 322 0.85
6 6 0.0001 0.0094 16.4 1.1 1 23 330 353 330 353 0.91

Sequence Information

Coding Sequence
ATGGAGAAAACAACAACGAAGTTCTTTTTAAGTAGGCTAACTAGGCAGACTTTGAGGTGGGTTAACGTAGGTTATTATATAGCTCAAGATGTCCCTTTGCAACGCTATTCAATTTTTTTAGGGGATACCCAGTACGAGGATCCGCAGGTGCAGTTTACTCGTCCTATCCCGGATGAAGTCATCAGTGTTTATGAAGTTTATGTGAAAGAGGAAACCGCAGGTTCTGAAGGGAGGAACGATGTCACCGTTGTGCCGAGTTTGCCATCCACAAATGATCATCAATTAATTCAGGGTGATTGCATGAACCTAAATGTAGCTATAGATTCTGAAGTAATTAACATTGATGGTGCTGTGACGAAGTTTCTCGGAAAAGATGCTTTCAAATATAAGATTCTCGATCAAAATATTAATTCATCCGAAGATAACGTTATGGTGTATTCACATCCGGTTGTCGAAGGACCTTCCTCGTCCTCCACTCGACTGATCGATAAGGATGATCCACGGTCGAAGCTTCATTTTGTGAAATATTTGAAAAGAGATGGGAAAACGTTGAAAATTTGGGAATGCGGAATTTGTTCGAAGGAGTTCCGGCATCAGTACACACTGATGAGGCATTTGCCAACACACACCGACGAGAGAAACTTTAAATGCGAGGCTTGCGGCAAAGCTTTCCGCCAGTTGTCGACATTGAGCCAACACAAGGCGATACATAGTGATGCTAGGCCGTACGTTTGCGAATTTTGTAAGAAAACTTTCAACAGAGTATCTACGCTGATCTCTCACCGAAAGACACATTCGGAGCACAAACCGCACAAATGTCAGGTTTGTGGAAAGGGATTTCATCAGAAGGGCAATTTGAGGAACCACGTGTTTACCCATACCAACGAGAGGCCGTACAAATGCGAGCTTTGTGGCAAAGGCTTCAATCAAATGTCGAATTTGGTCTGCCACAAGGTCAAAGCGCATGCACACGCGGAGAAAATGCAGCACGTGTGCGGAATCTGCGGCAAAGAGTTTCCGCGTCGATTCTCTTTGAGATCGCACGAGGAGTACAAGCACGGGATAAAGTATCGACATCCGGCTGGTATGCAGCCGGGCATCGTCGATCCCAACGTCATAAGAAATAAAAACGTTAGGATCGTGCAGCTGCCAAATGGCGATCGAGATCAAACTATAGAAGTAAGGGACAAGGATCCTTTAATGGCGTCCGATGTAATGGAATCTGTAGTGATAGATAAGATTGATACGAAAGCGATGGAGATGGCACTGATCGAAGGACAAACGCCATTCGCGTTATTTAAACCAGCCAAAGGAATTCCTGTCCTCGTGAAAGTTTCTCCAACAGGAACTCATAAAAATATCTTGACTCCTGCTACAGCAGAAGATTTACGTATGGCAGGGAAGATGAGTCTAAGTCCAACGATTTCTGCTGACGCCGACAGGATCAAAGCAGTTCAGGTAAAGGTACCCGTGGTAGCCACAGTTATTCAGAATATAGATCCTGATGGTAAAATAAATTTCATCGTTGAACCACCGGGACCGGAGGACGAACACGAGAGCTTGGTCACGGCATTGGATTCTCAGTTCACGTACAGCGACCCGGCTAGAAACGAGCCCGATCGCCAGAATGGTCCTGTTGTGTCCTCGGCGATGGAGGATTGCAACGAACTGCTGGAACTGGCTGCCCAGGGTGGAATACAGTTCGTGCGCGCTACCGAGGATGGTCGTTACGAGGTAATGACGAACAGCGAAGCTCGGGATCTGATGGCACAGAATTCGCACGACGTGACCATTCTTGAGGGCGAGGACGCAGACGCGATCAATGTTGTGAATATGCGCGGTAACGGAGAAGTTATTATCGGAGATTCTGATAATCAGATCATGGTACTTGATTCCGCCTCTACGCAGAAATCTATGCCGATAGACGGCATTGAGATCCTAGAAGACAAAGACATTCGGATTCTCGATAGTAAAAGTCTCGACGATCGTTTTGTGGATGGCATTAGTTTCCTCTCGCAATCGAAGATCGATGATCTGATCTTAGGCCCAAAATCTTTGTCCATCGATGGTGGAGTCTCTGTTGGCGAACATGAAGATGAAGCCATAGGAGTGCCTTCGAGCCAACAAGAATTAACAAATATTCTTAGTCATAGAAGCGACATTTCGTCTCTGTCGACTGCTTCTCAGTCTTCGATATCGTCTCTGCTAATGAAAAATCATCCATCATTGTCAATTTTAAACGACACACTTCCATATCTGAAGAGCAATACCAGTTTAGCCGAAGATCTTAATATTCTGGGTAATTCGACTATGGACGATCATCATTCCGTGTATGAGTCCAAGATAAAGTTGCCCTGTGTTTTCGATAACAGTGAGTCTGATACTGGTTTGATACCTATTAGTCAATCGGACATGAAGATCCTCGGATCGGGAAGTTCAAATAAGGTTCTCGGTAGTAAATCAAATAGTCTACCGTCATCGAAATTGTTTTCCGGGTTGAACGAAGTGAAGATTCTGGGCCCGAAAAATCATAATCAAGAGATCATGACGTCACAGTATCAGGATCTAAAGTTACTTAGTCCGTACGAGCAATTTTTGAAAAACACCGCTTCGAACACTAATGGCTGCGACAGCGGCGTAGTCACCACTTCCGGTGGATGCAGGAAGGAAGTAAAGATTTTAGGCAAGAAGTTGGGAACTGGCATTATTACCAGCACGGAGGAAGGCAACGTCGTGGAAGTCATTGAGGAGAAAACTAAGCTGATGATGGACTGCGCAGGAGGGCTTTGCAACAGCTCCGACAACACGGTGATCTCGTCGCCTCGGTTGGACAGGCAGATCAGGGAAAATGGTGGTCCAGACAACTTTTTGCTCCAAGCTTGTAGCCCATGCGACACGGACTTTTTGAATTTCGAAAATCGTTTGAAAGACACATCGCCGGCTGGCCATTTTGAACGAACTCAAAAGGATTCGAGGGACAGTTTCAGCTCCACTGGCGGTCTTCCCGATCTCGATTGA
Protein Sequence
MEKTTTKFFLSRLTRQTLRWVNVGYYIAQDVPLQRYSIFLGDTQYEDPQVQFTRPIPDEVISVYEVYVKEETAGSEGRNDVTVVPSLPSTNDHQLIQGDCMNLNVAIDSEVINIDGAVTKFLGKDAFKYKILDQNINSSEDNVMVYSHPVVEGPSSSSTRLIDKDDPRSKLHFVKYLKRDGKTLKIWECGICSKEFRHQYTLMRHLPTHTDERNFKCEACGKAFRQLSTLSQHKAIHSDARPYVCEFCKKTFNRVSTLISHRKTHSEHKPHKCQVCGKGFHQKGNLRNHVFTHTNERPYKCELCGKGFNQMSNLVCHKVKAHAHAEKMQHVCGICGKEFPRRFSLRSHEEYKHGIKYRHPAGMQPGIVDPNVIRNKNVRIVQLPNGDRDQTIEVRDKDPLMASDVMESVVIDKIDTKAMEMALIEGQTPFALFKPAKGIPVLVKVSPTGTHKNILTPATAEDLRMAGKMSLSPTISADADRIKAVQVKVPVVATVIQNIDPDGKINFIVEPPGPEDEHESLVTALDSQFTYSDPARNEPDRQNGPVVSSAMEDCNELLELAAQGGIQFVRATEDGRYEVMTNSEARDLMAQNSHDVTILEGEDADAINVVNMRGNGEVIIGDSDNQIMVLDSASTQKSMPIDGIEILEDKDIRILDSKSLDDRFVDGISFLSQSKIDDLILGPKSLSIDGGVSVGEHEDEAIGVPSSQQELTNILSHRSDISSLSTASQSSISSLLMKNHPSLSILNDTLPYLKSNTSLAEDLNILGNSTMDDHHSVYESKIKLPCVFDNSESDTGLIPISQSDMKILGSGSSNKVLGSKSNSLPSSKLFSGLNEVKILGPKNHNQEIMTSQYQDLKLLSPYEQFLKNTASNTNGCDSGVVTTSGGCRKEVKILGKKLGTGIITSTEEGNVVEVIEEKTKLMMDCAGGLCNSSDNTVISSPRLDRQIRENGGPDNFLLQACSPCDTDFLNFENRLKDTSPAGHFERTQKDSRDSFSSTGGLPDLD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01169399;
90% Identity
iTF_00676240;
80% Identity
-