Basic Information

Insect: Bombus turneri
Gene Symbol: -
Assembly: GCA_014825825.1
Location: CM026123.1:5416587-5419577[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.047 4.2 8.1 4.2 1 15 213 227 213 231 0.85

2 8 4.1e-05 0.0037 17.7 4.4 1 23 241 263 241 263 0.99

3 8 2.8e-07 2.5e-05 24.5 1.5 1 23 269 291 269 291 0.98

4 8 1.2e-06 0.0001 22.6 0.9 1 23 296 318 296 318 0.96

5 8 6.6e-06 0.00059 20.2 2.6 1 23 324 346 324 346 0.98

6 8 1.1e-07 9.9e-06 25.8 1.5 1 23 352 374 352 374 0.98

7 8 0.00019 0.017 15.6 2.2 1 23 380 402 380 402 0.97

8 8 3.7e-05 0.0033 17.9 9.0 1 23 408 430 408 431 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.047	4.2	8.1	4.2	1	15	213	227	213	231	0.85
2	8	4.1e-05	0.0037	17.7	4.4	1	23	241	263	241	263	0.99
3	8	2.8e-07	2.5e-05	24.5	1.5	1	23	269	291	269	291	0.98
4	8	1.2e-06	0.0001	22.6	0.9	1	23	296	318	296	318	0.96
5	8	6.6e-06	0.00059	20.2	2.6	1	23	324	346	324	346	0.98
6	8	1.1e-07	9.9e-06	25.8	1.5	1	23	352	374	352	374	0.98
7	8	0.00019	0.017	15.6	2.2	1	23	380	402	380	402	0.97
8	8	3.7e-05	0.0033	17.9	9.0	1	23	408	430	408	431	0.95

Sequence Information

Coding Sequence: ATGATGAACAAAGAATGTCCAAGTTGTAGACAAATAATAAATACATCACGTACAAGACTTGTGAAAGATAATTGCGGACACATTAAATGTCGTATGTGTTTAATATATGAAGAACAAGGTTGCAAAATTTGTATAAATGAGCATTGTATACAAAATATCGGAAATTATGATTGTTCTCCTTCAGAGAAAAAAATATTAAATAATGCTTCTACTTCTGATAAAGGTAATATATGTAATGATGTATTACCCTTGGAATTAGTTATTAATAAAAATTCCAAACTCAAAGCAAATAATATTGAATTAATTTCTGTCGATTATATAAATAATTATGAATTATATCCTGAAGATGTATTTAATAAAACAAAAGAGGTACATAAATCTTCTACAACAGAGATTAAAGACAATGTTGTGTCAAACAAACTATATATTTCAAACATAGAATCGAACAATATACTTTTAAATGTGTATCCACATTTAAGTAATAATGTTGTGGTAAGATCACCTAGCAATAAAACATCAGAAATTTTCAATGGGGAAGTTAAAACAGAATATTTAAAAAAAGAGAAGTTAAAAAGTAAATCAATAAAATGTCATGATCGCAATCATATTACTGTGATACCAGGGACACCAGAAAAGTATAAATGCAATATATGTAGCAAAATTTTTCGAAACAAGAAAGGAAAATGTTATCATGATGCTTGTATAACTGGTGTTAAACCTTATCAATGTTCTTTTTGTGATAGAAGTTTCATTAAAAGGTCTCATTTTGAATATCATGAAAGAATTCACAGAGGATACAAACCATATAAATGTAATCTTTGTGACAAAGCATTTCCTCAGCAAAATAAGCTTAATAGGCATATGTATTCACATGGGGAAAAACAATTTACATGTCCTAAATGTGATAAAAGATATTCTAAACAAGATGATTTAAAAAATCACTTAGATGCACATAATGGAACATCCACGTATTCTTGTAAAGCATGTGAAAAAACTTTCAGGATGTTAACCAATTTAAAACGTCATCTAAAAACACATTCTAATGAAAGACCATATGTATGTGATCAATGCAATAAAAGCTTCAAAGATAAATCATTGTTAATTCGTCATAAAAAGATACATGGAAAAGATAGGCCATTCTCATGTGCACACTGTAGTAGAGTATTTTTATCTAAAAGTGAATTAAGACGTCATTTGACAGTTCATTCAGATGAGAAGCCATTTTCTTGCAAATTCTGTGAAACTGTGTTTAGAAGGAAAGATAATTTACACAGACATATTAGACATCATCATCCAGAAAGTCCATCTTTTAGTAATAATAAGATGCAGAGTACAATTCTTGAAACTGAAATAAAATTAACAAAAGCCAAACAGTTGAATTCTAAACAAAAACAAACGACAAAAAAGACACAAAAAATTGCTTCCAATTTATTACCAAAAACTCCAACTAAAGTATCAGTGGTTTGCATAAGTTCATGTGACCAAATCAGTTCTAGATTAGATTCAATGGGTAACATCACACCTGTTATAAGAACTACCAATGAAGTGAGTAATGCAGTTTCTGTTATTAATGGACCAATTAATATTAAAAAACTAGATGATAAGTCTGATACCAAAAAAAAGACATTTACATATACAGAACCAATACCTCTTGCTGAAGCAGTGGTAATAAATAAACGTATTGAGGAAAAGTTATACCCACAAAATGCGTCAAGTCATAATTATTTTCTTAGAAATTGTTTGAATTGTACAGACAAACCATATCCTGCCTTTGTAAATCAAATTTCTCGCACAAATTCTAACCAGTAG
Protein Sequence: MMNKECPSCRQIINTSRTRLVKDNCGHIKCRMCLIYEEQGCKICINEHCIQNIGNYDCSPSEKKILNNASTSDKGNICNDVLPLELVINKNSKLKANNIELISVDYINNYELYPEDVFNKTKEVHKSSTTEIKDNVVSNKLYISNIESNNILLNVYPHLSNNVVVRSPSNKTSEIFNGEVKTEYLKKEKLKSKSIKCHDRNHITVIPGTPEKYKCNICSKIFRNKKGKCYHDACITGVKPYQCSFCDRSFIKRSHFEYHERIHRGYKPYKCNLCDKAFPQQNKLNRHMYSHGEKQFTCPKCDKRYSKQDDLKNHLDAHNGTSTYSCKACEKTFRMLTNLKRHLKTHSNERPYVCDQCNKSFKDKSLLIRHKKIHGKDRPFSCAHCSRVFLSKSELRRHLTVHSDEKPFSCKFCETVFRRKDNLHRHIRHHHPESPSFSNNKMQSTILETEIKLTKAKQLNSKQKQTTKKTQKIASNLLPKTPTKVSVVCISSCDQISSRLDSMGNITPVIRTTNEVSNAVSVINGPINIKKLDDKSDTKKKTFTYTEPIPLAEAVVINKRIEEKLYPQNASSHNYFLRNCLNCTDKPYPAFVNQISRTNSNQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01417888;
90% Identity: iTF_00225460;
80% Identity: -