Btur002028.1
Basic Information
- Insect
- Bombus turneri
- Gene Symbol
- -
- Assembly
- GCA_014825825.1
- Location
- CM026102.1:3526944-3530360[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.023 2.1 9.0 0.1 5 20 149 164 143 165 0.90 2 13 1.5 1.4e+02 3.3 4.8 1 23 173 196 173 196 0.93 3 13 3.1e-06 0.00028 21.2 0.9 1 23 202 224 202 224 0.98 4 13 3.3e-05 0.003 18.0 2.7 1 23 375 397 375 397 0.98 5 13 0.0032 0.29 11.8 0.3 2 21 407 426 406 427 0.93 6 13 0.00029 0.026 15.0 2.6 1 20 449 468 449 471 0.92 7 13 0.014 1.2 9.8 0.7 1 23 476 499 476 499 0.95 8 13 1.2e-06 0.00011 22.5 0.3 1 23 505 527 505 527 0.98 9 13 0.002 0.18 12.4 6.3 1 23 534 556 534 556 0.98 10 13 0.00034 0.031 14.8 0.4 3 23 564 584 562 584 0.97 11 13 0.00039 0.035 14.6 0.2 1 23 590 613 590 613 0.96 12 13 0.2 18 6.1 0.1 1 23 627 649 627 649 0.94 13 13 0.0012 0.11 13.1 0.0 2 23 904 925 903 925 0.96
Sequence Information
- Coding Sequence
- ATGGAAGCTCATGAAAATGAGCAGTATGTTACGTTTCCCCTTTCAGAGGTACACGATAGTATACAGGATAATATTATATCTCATGAAGAAATATGTGAACCAGTTGACGAATGTGTTCTACAAGAAGGACTCACTGAAGTATCTGTTACAGACGTTAATTCTAGTATCACAGAAGCACAGGTTGCGGTTGAGATTTTAGCAAAACATTCCGACGAGGAAGATAAAAATCGTGTAGTATATCCTATATATATTAAGGAAGAAGAACAACATCAATACACATCTGGGGATGATGAATCGATGGCTGTGGAAGCTTTACGACAACTTGGAGGCATGTATCCTTGTTTCGAAGACAAAAAAGTATGTCCGCATTGTGCAAACCTGTTCACACAAGCTGAGATAACAAAGCATCGTACTACCTGTTCTGCTAGTAAATTATCATGTATTACATGTGGAGAAAGATTCGAAAGAAAAATAGATTTAAACAATCATATAGTTTGTCATCAAGTAGATCGCCCACATGCTTGTAGAACTTGTGGCAACTTGTTTCGTTCAAAGAACAGTTTAAGATGTCATATGTTGCAAATGCACCAAATGCAAAAACCTCATAAATGCACCATATGTGGAGCAGATTTTCAAAGGCCTTCTAGTTTATCCAATCATATGAAAATTCATACATATGTTGCTGGACGTGCCATTATGCAGTCACAGAGTGATAATGTATCACAGTCAGAGGAAACATTCAGAAAATGGCCTGAAAATATGACAGAATCCCAAAATAATCAAGTGCCATCTTCGTCTGTACAAACGGTTCAAAGCTATGATACAGTTCAATGGACAGTTCCATCTTATAACTTTCAAAGTGAGCAGGCAGCAGTTAATTCAATATCTAATCCTGAGGAAAAAATAGACACTTTACATGAATTTACTGTAATGCCAAATGGCGAAGTAACACAGTTTGAATATACTCAACAAAATAATATAAATAATCAAGTCAATCAGCAATACAATCTTTCATTGAACTCGTTTAATAATGCTGATACAATGGTGAAAGTTGAAACTTTATCGTATAATAGTGAAGATAGAAAGAATTATATAGAAGTTGAAACAAATGGTACAAAACAGCATACTTGTAGACATTGTGGAATTAGTTTTTCTCGTGCAACAGCATTGGTATCCCATGAGAAAACTCATACATCTAAAAATTGGAACATGCCAATTGAATGTGAGTATTGTGATAAACAATTTCAAGATGGTAATCACTTAGCAACTCATCAAACAACTTGTGCGAAGAAACTAATGCAAAATAATGTTGAACAAGGTACACCTAATAATAAATGGGGTAAACATGCATGTTCTGAATGTGGCAAAAAATTTACAACCAAACAAAAAATGTTCAGACATCAGTGGATTCATAGAAAGAAAACACATTCTTGTGAAGTATGTGGATCCCAATTTGAAAAGCAAAATCAGTTGGATGAACACAGATTATCGGCTCATCCTGGTGACTCTCCATTTACTTGTACAGAATGTGGTAAAAGTTTTGTATCACGTCAAGGACTTTGGGAACATGGTAGAACACATGCTGGGAGTCCTGCACATTTTCATTGTGATACATGTTCCAAAACATTTTCATCGAGACAGGGATATTTAATACACCATAGAACTCATACTGGAGAAAGGCCATATGGTTGTAAATTTTGTTGGAAAGCGTTTAGAGATGGTGGAACATTAAGGAAACATGAACGTATTCATACAGGAGAGAGACCTCATGTTTGTCCTCTATGTTCAAGAGCATTTAATCAAAAAGTTGTTTTAAGAGAACATGTTCGATGGGTTCATGCAGCAGGAAAAAATGAAACTGAAGTAACTGGGCCCCCTTTTTCCTGTCCTATATGTGGTGCTTTAAATCAAGATCGGGATGAATTATGTGCACATATTGTTAAACATTCAGATCAAATGATTGCAGAAGCAAAAGCTAAAACAAACAATAATGCACCAAAAACCAAGCCAGTTAAGAAAAAATCAAAAGTGTCTGCAAATACATATTTACAAGGAAAACAAGGAGCTGGAAATCTTATAATTCCTAAATCAGAGGAAACTGAAGCACTTTTGTCTATTACAGAATCAGATAAATCAGATGACCAACAAATTTTAAATGATAAACAAAATAATACTTTCCTTGTAGTTACTACAGAAAAACGTGATGAAAATTATATTGCAATATCTGAAATTAAATCTGAAGACGTACAATTATTAGTTGATGAAAAACAAGATGAAAATATGCATATTTCACAAGCTAATCATAGTCACAGAGAATCTTTAAATACAACTCGCATAGTTTCTACAGAACGAGAAGGAAGTGCACTTCATACCACAAGCAGTCATAATGAAATAACTACAATGCATTTAATACAGACTTCAAAGCAAACAAATACTTTACATTTAATATCAAAGCAAAATGAATCGTTGCCTGTTTTGACACTACCAAATCCTCAGAGTCACGAAAATTTTTCCAGTCAAATTGCACAAATAAGTAATGATGATTTACCAATGAATATGGTAACTCATCATTCAACTAGACAAAATCAAGATATTAAGAATCACAGTGAAGTTGGACAGGAATCATTAATACAGGAGGGAGGATCCCAAACGGCTGTAATACAAGTTGTACAATATCATCAGCAAGACAGTGATGATGGAGAGGAATTAGTCTGTGGTATTTGTGGAGAAGATTTTAATGATAAAAATGTGTTGATGGAACACGTTAAAATTCACATATAA
- Protein Sequence
- MEAHENEQYVTFPLSEVHDSIQDNIISHEEICEPVDECVLQEGLTEVSVTDVNSSITEAQVAVEILAKHSDEEDKNRVVYPIYIKEEEQHQYTSGDDESMAVEALRQLGGMYPCFEDKKVCPHCANLFTQAEITKHRTTCSASKLSCITCGERFERKIDLNNHIVCHQVDRPHACRTCGNLFRSKNSLRCHMLQMHQMQKPHKCTICGADFQRPSSLSNHMKIHTYVAGRAIMQSQSDNVSQSEETFRKWPENMTESQNNQVPSSSVQTVQSYDTVQWTVPSYNFQSEQAAVNSISNPEEKIDTLHEFTVMPNGEVTQFEYTQQNNINNQVNQQYNLSLNSFNNADTMVKVETLSYNSEDRKNYIEVETNGTKQHTCRHCGISFSRATALVSHEKTHTSKNWNMPIECEYCDKQFQDGNHLATHQTTCAKKLMQNNVEQGTPNNKWGKHACSECGKKFTTKQKMFRHQWIHRKKTHSCEVCGSQFEKQNQLDEHRLSAHPGDSPFTCTECGKSFVSRQGLWEHGRTHAGSPAHFHCDTCSKTFSSRQGYLIHHRTHTGERPYGCKFCWKAFRDGGTLRKHERIHTGERPHVCPLCSRAFNQKVVLREHVRWVHAAGKNETEVTGPPFSCPICGALNQDRDELCAHIVKHSDQMIAEAKAKTNNNAPKTKPVKKKSKVSANTYLQGKQGAGNLIIPKSEETEALLSITESDKSDDQQILNDKQNNTFLVVTTEKRDENYIAISEIKSEDVQLLVDEKQDENMHISQANHSHRESLNTTRIVSTEREGSALHTTSSHNEITTMHLIQTSKQTNTLHLISKQNESLPVLTLPNPQSHENFSSQIAQISNDDLPMNMVTHHSTRQNQDIKNHSEVGQESLIQEGGSQTAVIQVVQYHQQDSDDGEELVCGICGEDFNDKNVLMEHVKIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00141985;
- 90% Identity
- iTF_00217900;
- 80% Identity
- -