Basic Information

Insect: Bombus turneri
Gene Symbol: -
Assembly: GCA_014825825.1
Location: JACXIJ010000086.1:2520-8415[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00031 0.028 14.9 0.4 2 23 261 282 260 282 0.95

2 11 0.0035 0.31 11.6 0.9 1 23 290 313 290 313 0.95

3 11 0.0002 0.018 15.5 3.3 1 23 370 392 370 392 0.98

4 11 1.7e-06 0.00015 22.0 1.5 2 23 442 463 441 463 0.97

5 11 1.6e-05 0.0014 19.0 0.8 1 23 468 491 468 491 0.96

6 11 4.4e-06 0.00039 20.8 0.3 1 23 529 551 529 551 0.98

7 11 7.4e-07 6.6e-05 23.2 0.9 1 23 561 583 561 583 0.96

8 11 2.1e-06 0.00019 21.8 1.2 1 23 589 611 589 611 0.99

9 11 1.1e-05 0.00094 19.6 0.2 1 23 617 639 617 639 0.98

10 11 8e-05 0.0072 16.8 4.6 1 23 645 667 645 667 0.98

11 11 0.00031 0.028 14.9 0.4 1 21 673 693 673 694 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00031	0.028	14.9	0.4	2	23	261	282	260	282	0.95
2	11	0.0035	0.31	11.6	0.9	1	23	290	313	290	313	0.95
3	11	0.0002	0.018	15.5	3.3	1	23	370	392	370	392	0.98
4	11	1.7e-06	0.00015	22.0	1.5	2	23	442	463	441	463	0.97
5	11	1.6e-05	0.0014	19.0	0.8	1	23	468	491	468	491	0.96
6	11	4.4e-06	0.00039	20.8	0.3	1	23	529	551	529	551	0.98
7	11	7.4e-07	6.6e-05	23.2	0.9	1	23	561	583	561	583	0.96
8	11	2.1e-06	0.00019	21.8	1.2	1	23	589	611	589	611	0.99
9	11	1.1e-05	0.00094	19.6	0.2	1	23	617	639	617	639	0.98
10	11	8e-05	0.0072	16.8	4.6	1	23	645	667	645	667	0.98
11	11	0.00031	0.028	14.9	0.4	1	21	673	693	673	694	0.94

Sequence Information

Coding Sequence: ATGGAAGTTTCGAAAAATGAGCATTTAGTTGATACATATGAGAAAATTTATGGAGATGAATGCCGAATCTGTTTGAAAAAAGCTGTTGAAATTTGTGAACTTTTTAAAAATGGGAACGCTATTCCTCAAAAACTTATGGCCGTTGCTTCTGTACAGGTTGCAGAAGGGGACGGTTTACCACCAGTGATTTGCTTGCCTTGTAACCAGCGTTTAGATGCATCGTACGATTTTAAATGTCAAATACAAAATTCAGATGAGAAGCTTCGTCAAATTTTAAAGCTGAAATCCTCTTCTAACGATTCTGTTACCAATGCCAGCAGCATAGTTACAGCAATAATCGCTGATGTGATATCTAGCGTAATATCTTCTGAGAAAGAAAATACAGAAAAGCAAGAAGTTTGTTCTACAAATTTCTGCAATGATAATTTTTGCTTTACGAAAGATGAAACAGCTTTTTGTCTCAATTCAGAGAAGAACTTGTTTTGTTACGAAAAAGAATCATCACACAGTCGATTAAACGATACAGAGGAAAGAAAGAGCCTAGAAAATGTAAATGTTTATAAGAGTTTATTAGAGGATGATTCTGTAAGACAAATCGGTTCGATAAAACAAGATTTTGTTTTATTAGACGAACATATGGTACAAACTAAAGGTGTTCCATTAAAAGGAGAAGCGAGTATCGAAGAAAGTCAACAAATGTCAGAAGAGACATCAAAGACAGATAGTATTCAAGATGATGATGATGATGAAAAACCATTAATTTCACGCACAACTAGATTACGCTGTACACAATGTATCAAGTCTTTTCGTACAAAAGTGGCCTTGCAGAGACACGCCATTGTACATAAACGTAAAACCAAATTACGTTATGTTTGTTATGTTTGCGATAAACAATATTCTACGCTTGCAAAAGTGAAAAATCACGTTGCAATTTGCCACGAAGCTCGCGATAGGAAAGAAAATATTCAACATAAGAGAATTAGCTATGAGCAAAATAAAGCAATCGCGAGTGTACAAGATAAAAGGATTAATAGTAATGTCCAAGATAAAAGAATAAAAATTCAAAAAAATGATGACTCTCCTAAGGAACAACGAAAAAGCTTAAAATTTACTTGCAAAGTGTGTTCAAAACAATTTACTTATCAAAAATCTTTTATCACGCACGCTAAAAGTCATCCAGAGTATAAACTGGAGGAATTGGATGATTCGTCTCAATGTTGGGTAAAAGAAAGATGTACAGAAACCGTGGTGGAAGAAGAAGAAAATGAAGAAGAGGAAGACGAAGAAGACGAGGAAGATGAAAACCTTCCTGCTGAAAGTTTACAATGCACTCAGTGTGGGAAATTATTTGCAACAAAAAGAAATCTTAAAAGGCATGTCTCCACACATAGTGGATTAAAATATACGTGTGAAACATGTGGTAAAGGATTCTCAAGAGTGGATAAATTAAAAGATCATGAACAATCAAAGCACAAGGCTGAATTATTCGACAATTCTGATTTGGATGATAAAGAGGACACAGACAATGTAGTTAATAAAGGTGACTGTTTAGAGGGAAGAAAGAAAGATCGTCACAATAGACCTCACAAATGTGCAATCTGCCCTAAATCGTTCGCGCAAGCGCAATCGCTAGCGAATCACATAGAACGTCATAAGCGGGTAAAAGAAACTCAAAAAAGATTTCTTTGCGAAGTCTGTAGCAAGTGTTTTGCACAGAGTGGTTCTCTGGTTGCGCACATGCGTACACATACAGGAGTTAAGCCATACGTTTGTAACGTGTGTAGTAGAGCATTTACAAAGAGCACTTATCTACAATTACATCTACGTACTCATAGCGGTGAAAAACCTTATATTTGCCAGTATTGCAGCAGGGCGTTTGCACGTGCTAATACATTAGCACGACACATAACAATGCATACAGGGGAAGCAAAATATCATTGTCAGATTTGTACAAAATCATTTAGAAGACTGACTTCGTTGAATGAACACACTTATACGCACACTGGGCAGAGGCCATACGCTTGCAAAATTTGTACAAAGAGATATAACAATGCAGGGTCACTTTACGCGCATAGAAAGAAGTGCAAGGCACAGCAATTATCTAACCCTGGATTCGCGGTTTCCGTGGAAACCTGTACTGTATCAGAACAACAAGAAGTGGGTGTTTCACAAGTTTTAATATATTCCCACAGGAAATTAGTAGAGGACGCAACTGTTGGGCAAGTCACGCCCACACCACAGTACATGCTCGCAAATGTACACAATCAGAAGAATTTGGGATCAAATATTATACAACCGTTTCCAGTGGATGATTCAAATTTTGATATTGTTGTAATGGAAAAACCGCCTTCTGCTATGTCAAAAGTTCGTTACCGTTTGATTGACATTACGACACCTTGTCAAGTTATATAA
Protein Sequence: MEVSKNEHLVDTYEKIYGDECRICLKKAVEICELFKNGNAIPQKLMAVASVQVAEGDGLPPVICLPCNQRLDASYDFKCQIQNSDEKLRQILKLKSSSNDSVTNASSIVTAIIADVISSVISSEKENTEKQEVCSTNFCNDNFCFTKDETAFCLNSEKNLFCYEKESSHSRLNDTEERKSLENVNVYKSLLEDDSVRQIGSIKQDFVLLDEHMVQTKGVPLKGEASIEESQQMSEETSKTDSIQDDDDDEKPLISRTTRLRCTQCIKSFRTKVALQRHAIVHKRKTKLRYVCYVCDKQYSTLAKVKNHVAICHEARDRKENIQHKRISYEQNKAIASVQDKRINSNVQDKRIKIQKNDDSPKEQRKSLKFTCKVCSKQFTYQKSFITHAKSHPEYKLEELDDSSQCWVKERCTETVVEEEENEEEEDEEDEEDENLPAESLQCTQCGKLFATKRNLKRHVSTHSGLKYTCETCGKGFSRVDKLKDHEQSKHKAELFDNSDLDDKEDTDNVVNKGDCLEGRKKDRHNRPHKCAICPKSFAQAQSLANHIERHKRVKETQKRFLCEVCSKCFAQSGSLVAHMRTHTGVKPYVCNVCSRAFTKSTYLQLHLRTHSGEKPYICQYCSRAFARANTLARHITMHTGEAKYHCQICTKSFRRLTSLNEHTYTHTGQRPYACKICTKRYNNAGSLYAHRKKCKAQQLSNPGFAVSVETCTVSEQQEVGVSQVLIYSHRKLVEDATVGQVTPTPQYMLANVHNQKNLGSNIIQPFPVDDSNFDIVVMEKPPSAMSKVRYRLIDITTPCQVI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00118159;
90% Identity: iTF_01417854;
80% Identity: -