Btur018761.1
Basic Information
- Insect
- Bombus turneri
- Gene Symbol
- -
- Assembly
- GCA_014825825.1
- Location
- CM026123.1:1443992-1447225[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.4e-13 7.1e-10 38.5 0.0 1 39 141 180 141 184 0.90 2 4 1.4e-12 2.8e-09 36.6 0.1 2 39 196 233 195 236 0.94 3 4 3.7e-19 7.9e-16 57.6 0.0 2 45 251 295 250 295 0.97 4 4 4.3e-19 9e-16 57.4 0.1 1 42 302 344 302 345 0.97
Sequence Information
- Coding Sequence
- ATGTTTTGTCATACAGGCCTCGGTCATTACGGTCATCATCCGGATCCCGGAGAGGTTGACCTACCTCCAGAAACTCAACCTACACCACCAAGTGCCACATTGGTCGGTACTACGATTACACATTTAAGGGACCCGGATCATCATTCCACAGAGATCCAAAATTGTGACAGTGTAAAGATCAAGTTCGAAACATTGCACACGATGGATTCGTCGGACACGATCGATATCGATAGCCACATGTCGGATCGAGCAAGCGTCAGTTCAAAGAACGCGGCCGATAGCGACAACATGATGATGATCACACCGGAGTTACTTGGATTAATGCCTTCTGGAAGTTCGGTTCACTCGGATTCCGGCGAAAATAACTCAAGGGGTCACCCCGGACAATCCAGTTCTCATCATCATGGTTCGAAATCGTGGACGCAAGAGGATATGGATGCCGCTTTGGAAGCCTTACGAAATCACGATATGAGCCTTACGAAAGCCTCCGCAACGTTCGGTATACCCTCGACGACTTTATGGCAAAGAGCACATCGACTGGGCATCGATACTCCAAAAAAAGACGGACCTACTAAGTCGTGGAGTGACGAGAGTTTAAACAGCGCGCTAGAAGCGTTACGGACCGGAACGATATCGGCGAACAAAGCTTCAAAGGCGTTTGGTATACCGTCGAGTACCTTGTACAAAATCGCGAGAAGAGAAGGTATCAGGCTGGCCGCGCCGTTCAACGCAAGTCCTACAACCTGGTCGCCCGCCGATCTGGATCGCGCCCTCGAAGCGATACGTTCTGGTCAAACGTCAGTACAGAGAGCTTCCACGGAATTCGGTATACCGACGGGGACATTATATGGTCGATGCAAAAGAGAAGGCATTGAACTCAGTAGGAGTAATCCTACACCGTGGAGCGAGGATGCTATGACCGAAGCTCTCGAAGCTGTCAGGTTAGGCCATATGAGCATCAACCAAGCGGCTATTCACTACAACCTGCCCTACTCTTCCTTATACGGTCGCTTCAAAAGAGGAAAATACGAAGAACCAGCGGTGGGTGAAATATCGCAAGACGGTAGCAGTCCTCACTTTCATCAAAGCCCGAGTCAAAATCATTCGTCCGCTGTACCCGATCAAATGCCGTACCAAGGCAGCTGA
- Protein Sequence
- MFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDPDHHSTEIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAADSDNMMMITPELLGLMPSGSSVHSDSGENNSRGHPGQSSSHHHGSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNSALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPAVGEISQDGSSPHFHQSPSQNHSSAVPDQMPYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00225151;
- 90% Identity
- iTF_00227876;
- 80% Identity
- iTF_00227876;