Basic Information

Insect: Bombus terrestris
Gene Symbol: -
Assembly: GCA_000214255.1
Location: NC:27230-31638[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0027 0.16 11.6 0.6 1 23 438 461 438 461 0.96

2 9 5.5e-06 0.00033 20.1 0.5 1 23 467 489 467 489 0.99

3 9 1e-07 6.3e-06 25.5 0.3 1 23 495 517 495 517 0.99

4 9 0.034 2.1 8.2 0.7 1 23 523 545 523 545 0.98

5 9 2.3e-06 0.00014 21.3 0.2 1 20 551 570 551 571 0.96

6 9 0.026 1.6 8.5 2.4 1 23 580 600 580 600 0.94

7 9 1.1e-06 7e-05 22.2 0.5 3 23 608 628 607 628 0.98

8 9 0.00011 0.007 15.9 1.4 1 23 634 656 634 656 0.98

9 9 0.0022 0.14 11.9 2.6 1 21 662 682 662 685 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0027	0.16	11.6	0.6	1	23	438	461	438	461	0.96
2	9	5.5e-06	0.00033	20.1	0.5	1	23	467	489	467	489	0.99
3	9	1e-07	6.3e-06	25.5	0.3	1	23	495	517	495	517	0.99
4	9	0.034	2.1	8.2	0.7	1	23	523	545	523	545	0.98
5	9	2.3e-06	0.00014	21.3	0.2	1	20	551	570	551	571	0.96
6	9	0.026	1.6	8.5	2.4	1	23	580	600	580	600	0.94
7	9	1.1e-06	7e-05	22.2	0.5	3	23	608	628	607	628	0.98
8	9	0.00011	0.007	15.9	1.4	1	23	634	656	634	656	0.98
9	9	0.0022	0.14	11.9	2.6	1	21	662	682	662	685	0.96

Sequence Information

Coding Sequence: atggTCAAAGTCGATATGCAACAAAACGTTTTAAGTCAAGTAGCTGGAAGCGAACAACCGCAACAAGAGGAAGTTCAGCTAACCGAATTATTACCAGTAAAGCAATCGCGAATAAgggagaatgaaatttttaaacatatgaATACAAATGCTGATGCGACCGATGCTTTGAAGATACTCCAAAGTTTCACAACTGCCGATAGTTGCTATAACAACGATGAACATGAACTTTGCTCGCGAAATTTGTCTCTTTGCCgaaaaatcgaacaaattgAACAAGAGAAACAAGAGAAGGACGAGAAGAAGTGGCGAGAAGATAAACTGCGAAAGAGTATTGCTGAGTACGATAAACAAGTGATCGATAGCACCGAaatcagaaaagaaaaagaaagaaacaatgtTCGAAGATTCGAAAATGAATCGAGGACAAAGAACAGAAAATACAaacatttcgataaaaagtCGATGATTGGTTGTGTAGTAAAATctacgaagaaaagaacggTCGTTCGTacagtagaaaatattaaagatcaAAGAGATGAAGGAAATGACGACGATGGGATGAAACACCGCTATAAATTAGGAGAAAACGCATTCCTCGAAAATGAGAGGGGAAATTTCTTATCGGAGAATAACGGACAGGTAGAGTCAACAATTTATTTGGATTTAGACAAGAATAGTGAGTTAAATGATGACGTTTACATATTTCGTCGTGAGTTGATAGATGGGGAACAAGGACTGAAGGTAAACTTAAGAAACGTGGAACAATCATACGAAAACGAGAAGTCTGCGAAGACTACCGATGGAACGTTATTCAATCGAATAGCGATTCCTTGTGGGACGTCGATTGAAAATAACATTGATGTAGcagaaaaacaatttattaccACTGCTGAGAAAAATAACACATTTGGTACGAAAGTAACAAACCCAAAATTGTTACTGGAAGATTCAGCAAACGTATCAaatgtcaattttcatataacaaCGATGAGTTACCTTGCGgagaataaagataataataataaggtTCAAGATGAAGAGAACCCTACGAATACATTATTCAGACCAGAAGCTTCCAACAGTATAGTGGCTACCAAATCGACGTCGTCAACATTAATATCAACATCAatgtcatcgtcatcgtcatcgtcatcgtcatcgttaTCGTCGTCATTGTTGTCATCATCAACGCCGCCGCCGTATTCAAAGGAAGAGAATATAAACGGCAGCGAGTGCGACCGCGGCAAGGATCAAAGTACCGCTTTGCACGGTATGAAAACTAAACAAGAGAATCAGCAAAAAAGATATTGTTGCGTAGTGTGCGAGGCGCGATTTAAAGGTAGCGGAGGTCTTCGTAACCACTATAAGATTGTACACGGTGCGGGACCAATCTTCAAGTGTGACGAGTGTGGGAAAGAGTTCCCTTTAAAAGAGAGATTAAAACTGCACGTGAGAACACATACTGGCTTCAAGCCGTATAAATGTCCAGAATGCGACAAGAGTTTCGCCAGAGGAGGACAACTGGTGCAGCATCGACGTACTCACAGTCAAGTAAAACCGTATCGTTGCGGTTTGTGTTCTGGCACGTTCACCTGCGCTGCGAATTTGGCGTTACATGTAAAACGACACAACGGACAAAAGGATCACAAGTGTGAAATCTGTGGTCGTGCGTTCGTTCGGCGAGACGCTCTTAAGAAACATTTAGAATGTCTTCACAGAGACGTTAAATCTTTTCTCTGTGTAATCTGCAACAAGACATTCAAGGGCCACCTACCTCAACATATGAGAACGCATGCACGTGATCGGCCACACGGTTGTGCCACATGTGGTCAAAGATTTGCTCAAAAATCTCAATTGACTGTCCACCAGAGAACGCATTCTGGACAAAGACCGTTTAGGTGTTTGGTTTGCTGGCAGGCATTTGCACACTCGACAGCACTCAAACTTCACACAAGAAGACACACTGGCGAAAGACCGTTCAAGTGTGCCGAATGTAACGCTGGTTTCACGCAACTACCCCATTGGAAAaaacacatgaaatgtatcCATGGCAGAAATGAGCCGTACGCCTGCAAAAAGTGTACAAGTTTCTtcagaattaaaaatgatctGGAATGTCACGAAAAAACTTGTCATCCTGAATCCGAGACTGAACACGACGTTCCGAGTACTCAAACCTCAGATTTAATCACAAACACGATCATGCCAGCATCTATTTCCATGGCCTTACAACCGACAGCGACTCTCCTTTCCAATGAAATAATCAGCGATAAACCCTTGCCGTCGCCCTCCAAATATAGAATAATGACTGTCGAGAGGATGAGATTGTTGCTCGCTGTACTTCTTAAAAGAATCAGCAAACAAGAAAGACTCGACGAACTAGGCTTTGGTAAACGACTGATCGACCAAGTTCTTTACGATTCTCTGATATCCGCTGGCAAAGATCCAGTGGCAAGCAACGGTTTATCCGAACTTGAAACACTCACTAAGAATCTCGAGATATTCCTCAAATGGACTGTACCTAAAGAACATTGGGAACATTTTCGCAAATTGAATAAAACTCCCGAAGATATTTTGGAAACACTGACTGCTACTTAA
Protein Sequence: MVKVDMQQNVLSQVAGSEQPQQEEVQLTELLPVKQSRIRENEIFKHMNTNADATDALKILQSFTTADSCYNNDEHELCSRNLSLCRKIEQIEQEKQEKDEKKWREDKLRKSIAEYDKQVIDSTEIRKEKERNNVRRFENESRTKNRKYKHFDKKSMIGCVVKSTKKRTVVRTVENIKDQRDEGNDDDGMKHRYKLGENAFLENERGNFLSENNGQVESTIYLDLDKNSELNDDVYIFRRELIDGEQGLKVNLRNVEQSYENEKSAKTTDGTLFNRIAIPCGTSIENNIDVAEKQFITTAEKNNTFGTKVTNPKLLLEDSANVSNVNFHITTMSYLAENKDNNNKVQDEENPTNTLFRPEASNSIVATKSTSSTLISTSMSSSSSSSSSSLSSSLLSSSTPPPYSKEENINGSECDRGKDQSTALHGMKTKQENQQKRYCCVVCEARFKGSGGLRNHYKIVHGAGPIFKCDECGKEFPLKERLKLHVRTHTGFKPYKCPECDKSFARGGQLVQHRRTHSQVKPYRCGLCSGTFTCAANLALHVKRHNGQKDHKCEICGRAFVRRDALKKHLECLHRDVKSFLCVICNKTFKGHLPQHMRTHARDRPHGCATCGQRFAQKSQLTVHQRTHSGQRPFRCLVCWQAFAHSTALKLHTRRHTGERPFKCAECNAGFTQLPHWKKHMKCIHGRNEPYACKKCTSFFRIKNDLECHEKTCHPESETEHDVPSTQTSDLITNTIMPASISMALQPTATLLSNEIISDKPLPSPSKYRIMTVERMRLLLAVLLKRISKQERLDELGFGKRLIDQVLYDSLISAGKDPVASNGLSELETLTKNLEIFLKWTVPKEHWEHFRKLNKTPEDILETLTAT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00227468;
90% Identity: iTF_00221455;
80% Identity: -