Bter003500.1
Basic Information
- Insect
- Bombus terrestris
- Gene Symbol
- -
- Assembly
- GCA_000214255.1
- Location
- NC:4145717-4147961[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.034 2.1 8.1 0.7 2 23 29 51 28 51 0.96 2 10 3.7e-06 0.00022 20.6 0.9 1 23 57 80 57 80 0.97 3 10 0.025 1.5 8.6 0.9 2 23 86 107 85 108 0.94 4 10 8.8e-06 0.00054 19.4 0.5 1 23 113 135 113 135 0.98 5 10 6.7e-05 0.0041 16.7 0.5 2 23 142 164 141 164 0.94 6 10 2.1e-05 0.0013 18.3 2.1 1 23 186 209 186 209 0.93 7 10 0.00068 0.042 13.5 0.1 1 23 220 242 220 242 0.95 8 10 0.0026 0.16 11.7 3.6 1 23 248 270 248 270 0.94 9 10 1.6e-07 9.9e-06 24.9 1.1 1 23 276 298 276 298 0.98 10 10 5.7e-06 0.00035 20.0 0.1 1 21 304 324 304 325 0.96
Sequence Information
- Coding Sequence
- ATGCTTAGCAGCTGCGAAGATTTCCGAATCAAGAACGAGGATATTCTTCTCGATCCTGGACAAAAGTTCGAGGGGAACGAGAAAGTCTGCGACCTTTGTCAAGAAAAATTCCACTTCGTAACCAGATTAGTAGCTCATCTGAGGATCGTTCACGGTATCCATAGACCCTTCAAATGTGTCACGTGTGGGAAGACATATCCGCAGCAGTTTATGCTGAACGCCCATGTGAAAAAATCTCACACTCCTAAAACGATTTCCTGCACTGAATGCAGTTTCATGGGGGTGAATGCGACTGATGTGGAAAGACATACGAAACGACATCATCGAGAAATGAAGTTCACCTGTGAAATCTGTAGCGAGAACTTCGTAGACAAGGATTCTTTGATGACACACACAACTATGCATAACTTTATGCAGTTTCAACAATGTAACGCTTGTGGTACTACGTTCAATGATGCATACAGCCTAAAGGAACACAACCGTTTGTACCACTACGATCCAACAACGTTGATTCAAGAGAAGCTCGAAGCTGACAGTCCGCAGAACACCACGGAGCACAAATGCGACGTCTGTGGGAAGGTTTACAAGTACAAATCGGTCTTGAAGCAACACAAAGTGAAAGCTCATGGCGATATGCCAAATTACGAAAGACGTCGATATTTATGCGCTCTTTGCgggaaagaattaaaaaccGCAAAAGGCCTCGAAATTCACAATCGATCGCACACCGGCGAAAAGCCTTATACCTGCGAAGTGTGTGGCAAGTGTTTCGCCTGTGAAACATTGCTCAGGACTCATAATGTCACACACACTGGCGAGAGAAAGTATTCTTGCGATCAGTGTGGCAAAGCTTTCACGCAGAGATCCACGTTGGTCGTGCATAAACGTTATCATACCGGCGAACGACCGTATGTTTGTCCTCGATGTGGTAAAGGTTTCGTCACCAGGACTGTCCTGAACACTCACATGAAATCCTGTCGTTGA
- Protein Sequence
- MLSSCEDFRIKNEDILLDPGQKFEGNEKVCDLCQEKFHFVTRLVAHLRIVHGIHRPFKCVTCGKTYPQQFMLNAHVKKSHTPKTISCTECSFMGVNATDVERHTKRHHREMKFTCEICSENFVDKDSLMTHTTMHNFMQFQQCNACGTTFNDAYSLKEHNRLYHYDPTTLIQEKLEADSPQNTTEHKCDVCGKVYKYKSVLKQHKVKAHGDMPNYERRRYLCALCGKELKTAKGLEIHNRSHTGEKPYTCEVCGKCFACETLLRTHNVTHTGERKYSCDQCGKAFTQRSTLVVHKRYHTGERPYVCPRCGKGFVTRTVLNTHMKSCR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01169353;
- 90% Identity
- iTF_00219975; iTF_01169353; iTF_00360407; iTF_00118194;
- 80% Identity
- -