Basic Information

Insect: Bombus terrestris
Gene Symbol: -
Assembly: GCA_000214255.1
Location: NC:111670-119610[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 27 8.4e-06 0.00051 19.5 0.9 1 23 217 239 217 239 0.98

2 27 0.0046 0.28 10.9 3.7 1 23 262 285 262 285 0.96

3 27 6.9e-05 0.0042 16.6 0.5 2 23 292 314 291 314 0.96

4 27 0.0028 0.17 11.6 0.1 1 21 335 355 335 356 0.95

5 27 0.0029 0.18 11.5 0.6 2 23 452 473 451 473 0.96

6 27 0.0074 0.45 10.2 1.2 2 23 480 502 479 502 0.91

7 27 6e-05 0.0037 16.8 0.1 1 23 569 592 569 592 0.96

8 27 0.012 0.74 9.6 0.4 1 23 598 621 598 621 0.96

9 27 0.032 1.9 8.3 0.8 1 23 634 656 634 656 0.97

10 27 1.8e-05 0.0011 18.4 0.9 3 23 700 721 699 721 0.96

11 27 0.00065 0.04 13.6 0.9 2 23 781 804 780 804 0.95

12 27 1.6 97 2.9 0.0 2 23 813 835 813 835 0.84

13 27 0.02 1.2 8.9 0.1 2 23 842 864 841 864 0.95

14 27 6.6e-06 0.00041 19.8 1.2 1 23 872 894 872 894 0.98

15 27 0.39 24 4.8 0.8 3 23 922 944 920 944 0.83

16 27 0.00011 0.0066 16.0 3.3 1 23 947 970 947 970 0.97

17 27 0.0011 0.068 12.8 0.4 2 23 977 999 976 999 0.96

18 27 0.00047 0.029 14.0 3.9 1 21 1023 1043 1023 1044 0.95

19 27 0.0014 0.084 12.5 1.8 2 23 1058 1079 1057 1080 0.93

20 27 0.23 14 5.6 1.4 1 23 1083 1106 1083 1106 0.94

21 27 0.0069 0.42 10.3 0.9 2 23 1113 1136 1112 1136 0.92

22 27 1.6 95 2.9 0.2 2 23 1144 1166 1144 1166 0.94

23 27 4.8 2.9e+02 1.4 0.0 2 23 1173 1195 1172 1195 0.88

24 27 0.12 7.1 6.5 2.7 2 23 1204 1226 1204 1226 0.96

25 27 0.88 54 3.7 0.1 2 23 1232 1254 1232 1254 0.95

26 27 2.9e-05 0.0018 17.8 0.2 1 23 1317 1340 1317 1340 0.96

27 27 0.0086 0.53 10.0 3.0 1 21 1365 1385 1365 1386 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	27	8.4e-06	0.00051	19.5	0.9	1	23	217	239	217	239	0.98
2	27	0.0046	0.28	10.9	3.7	1	23	262	285	262	285	0.96
3	27	6.9e-05	0.0042	16.6	0.5	2	23	292	314	291	314	0.96
4	27	0.0028	0.17	11.6	0.1	1	21	335	355	335	356	0.95
5	27	0.0029	0.18	11.5	0.6	2	23	452	473	451	473	0.96
6	27	0.0074	0.45	10.2	1.2	2	23	480	502	479	502	0.91
7	27	6e-05	0.0037	16.8	0.1	1	23	569	592	569	592	0.96
8	27	0.012	0.74	9.6	0.4	1	23	598	621	598	621	0.96
9	27	0.032	1.9	8.3	0.8	1	23	634	656	634	656	0.97
10	27	1.8e-05	0.0011	18.4	0.9	3	23	700	721	699	721	0.96
11	27	0.00065	0.04	13.6	0.9	2	23	781	804	780	804	0.95
12	27	1.6	97	2.9	0.0	2	23	813	835	813	835	0.84
13	27	0.02	1.2	8.9	0.1	2	23	842	864	841	864	0.95
14	27	6.6e-06	0.00041	19.8	1.2	1	23	872	894	872	894	0.98
15	27	0.39	24	4.8	0.8	3	23	922	944	920	944	0.83
16	27	0.00011	0.0066	16.0	3.3	1	23	947	970	947	970	0.97
17	27	0.0011	0.068	12.8	0.4	2	23	977	999	976	999	0.96
18	27	0.00047	0.029	14.0	3.9	1	21	1023	1043	1023	1044	0.95
19	27	0.0014	0.084	12.5	1.8	2	23	1058	1079	1057	1080	0.93
20	27	0.23	14	5.6	1.4	1	23	1083	1106	1083	1106	0.94
21	27	0.0069	0.42	10.3	0.9	2	23	1113	1136	1112	1136	0.92
22	27	1.6	95	2.9	0.2	2	23	1144	1166	1144	1166	0.94
23	27	4.8	2.9e+02	1.4	0.0	2	23	1173	1195	1172	1195	0.88
24	27	0.12	7.1	6.5	2.7	2	23	1204	1226	1204	1226	0.96
25	27	0.88	54	3.7	0.1	2	23	1232	1254	1232	1254	0.95
26	27	2.9e-05	0.0018	17.8	0.2	1	23	1317	1340	1317	1340	0.96
27	27	0.0086	0.53	10.0	3.0	1	21	1365	1385	1365	1386	0.94

Sequence Information

Coding Sequence: ATGGAGTCCAGGGAACGCTACCAGGAGCTCTGCAGACTATGCGCATCCTACGACGCCGTCAAGATGGACATCTTCGGTCAAGAGGGCAAGAACAGACAGCTCGTTGACAAGATACAAGCTTGTCTGCCGTTTAAGattGCAGAAAATGATCGACTACCAAAATGCCTCTGTTATCGGTGTATGtacaatttggaaaatttctatgattttagAACAGCATGTGTTAATGCAGTGGCTCTCTTGGAAAGGTGTTTATCACCTTCAGAatcgAATGGAGATGTTACGACCATCTTGACATGCTGTAATGATTCAGAGTTTTTCGAAGGACGGAAAAGTATACCAGTGTTAATTCCGGAAGCTCCTATCGTAAATCCAAATGCTGCTTTAGGCACACCACCCAGATTGAATTCTGATGGAGAGGCTGATCATGAGACAGAAGAAATTGATAACAGTGGGACAGACGAAGCAACAGTTATGGACGACTCTGAAGATCGTCATTCAGAGGAGTATGAAATGGATATGGAGACAAATCCAAGTGATTTTTTGGAAATGACCTCGATAGTTGCAGAAGAACCTGAAGAATCAGTATTGAAACATCAGGATGTTTCCACTAACTTATCAGAgCATACGTCTCAACAACATGAAGTTTATGTTTGTTCCTTGTGCAGCAAAGCATTTAGTTCAAAGGGTCATTTGTCCTTGCACGCACGCATTCACGTTGGTGCCGGTGACGTGATTGGTGAAAAAGTTCTTACGGATGATCATACATCGTATAAAAGGCCCTATCAGTGTGATCTCTGTCATAAATCATACTCCACCGCAAAACATCGTTGGGGTCATGTATCTACAACTCACAGAGGCCATCCGGCAGTGACATGCGGTTATTGTTCCCGTATCTACTCAACCCGAACAAATTTGGAAGAACATATAAAATCACGTCATGCTGGTCTTCCAGCACCTACGGAGGTTCCACTGAACAATGCCTATCGGCCAGAAAATAGATATCAATGCAATGCTTGCGGGAAGATTTGCACGGATGCTATGGAATTGAACCTTCATGGTAGGATTTGTACTGAAGGGCAGAGATTAGATCTTTCACGAAAAAACGagattaatgataataaagttGTGGATAGTTCAGAAGCTTCGAGTATTGGAAGCGATGACGACGGCAAAGATTATAGaagtGCGGAAGCTAAATTAGCGAAAAATCCTCAATTAACGATTTTAAAACAAGCATTAACGAAAGGAGATAGTCTTAAGCGAGATTTTGAGGACAAATTTACTACAAATTGCAAACCAAAAAAATTACCGAAAACAGAGCATACTGACTTTCAACGTACTAAGAAATGGTATTGTGAATCGTGTCCTCAATGTTTTACTTCAGTTAATGATTTAAAAGAGCACGAAGCAACTCACGATGCGGATAAACCattcatttgtattttgtgtaaaaaagacttttttcttaaatcttcTTTAAGCAGGCATATTCAAACGTTACATGGTGTTGATCCATGTCCTATGGTGGAAAGTGATAAATGtctaaagaaaattgtttcacatAATTGGAATGAATCTATGGATCTCGATTCGTATGAGGGTAAAACCTCTTCTGAATTTCCATTGTCTCCAGATaCAAATGCAGAAAATGAAGACGACCATGAGAGCGGACAAGAAAATCTCATTGAGATTGAAACTGTGTTTGTTTGTGAAATTTGTACTCGTGATTTTAATGACCGTGCATCTCTTTGGCTTCATATTCGTGCTACTCACAAAGAATTCGCGGCATTTGCATGTGgtgtttgtttaaaaatttgtgcCGACAACACACAACTTTTGAACCACGTAAATATGTACCACGGCGGCTCGAAATTACTGCTTTCTGAACAAAGAAGGTACAGTTGTACTATCTGTGGTAGGCAACATGATTccagaaaaaaattaattgctcATGTATCCATACATAATGTGGATCCAAATTATGATCCTGCTACTTTTGTTcaattaaatagtaattattatgGAGAGAACATTAACGGTAACGAAACTGCAGAACAAATGCTTGACTATGAAGAGGATAGCGATAAAGTGGActgttatatttgttataaatcgTTTCCTAATGAAGATCATTTAATACGACATCAAAGAAATGCACACAGATCGGAACAATTAGTACCAGCAGGAGATCCTTTAAACCCTTCGAGTTTAAATGGTGGCGGTAATAGAGCTCAATATCATCTCTTTTTTGTTTGTGAACTCTGTGGGAGTTCACATCCTAGTAAATGGGAACGTTGGCTACATGTTAGCTCGTCTCATAGCAATGAATCAGCCATAAAATGCGATCGTGAAGATTGTGGTAAAATTTTTGCTACAAAGTCACTCAGAAACGAACATATTCAGCATCACGCAATTCAAGGTTCATCCCCAAATACTTGTGAAATTTGTGGTAAACTTTGGGGTAGTAGAGTTGATTATTGGAAGCATGTTATGGGCGTTCATTCGGATACTGTTCCATTAATTTGTGGTGTCTGTTTAAAAGTGTTTCCAAATGTTTTGCAACTGAGTACTCATGTAAGATCGAAACATTGGCCGTTAACGAACGGCGACTTCAGCTGTGACATTTGTGGTAGACCATATTCGAATAAATCCAAAATGTCCAGACATAGAAAAATCCATGGTTTTGAGGAAAGCTGTGAAAATGGGGCTGAAAATAGCGAGAATAAAGCAGAGGGACGAATGAGGGAAACAGAATTAAGTTGCGAGCTTTGTGCAGATTTGAAGTTTAccaatttagaaaaattatgtaatcaTAGACGAATCGTTCATGGACTTTTCCCTTGCGATCTCTGTAATAAATGCTATGGAAGAACTTCACATTTATGGAAACATGTGAACAGAGTTCACAAAGGTCATGAAGATGTAACTTGCCCTTATTGTATGAAAACTAGTGCTTCAAAAGATCATTTAGCAGCAcacatttcaaaaattcatagaTACGAACCTGATTCTAGAAAGGATGGGAAAGATAATAGACAATTTAAAACCGAAGAAGTTAGTTTACATTATTgcgaaaaatgtaataaaggATTTCACAAGCGGTATCTATTGCGCAGACATATGAAAGGATGTCAGAATTACAGGAAAGACCCTGGAGCATTATTAACGAGATGCAGAGCTtgtgaaagaatatttaaagatcgTGCCAGTTTGCAAAAGCATATCGAGAATCATCATAGCACATACACGTGTCATCTTTGTAATGAAACAATCACCTCGAAATTAGGGATTATGACACATAACAGGGTGAAGCATATGGATCATCCGGATTTAACTTGTAATTTTGGATCCTGTAGGAAATTATTCAGAACTAAAGAAGATTTAGAAGCCCATAGAAAAGATCACAGatATCATACCACTCCTAACGTTTGTGATTTCTGCGGTGATACCGTTGAAAATAAACTGAAGTTAAAAATGCACGTTTTATCTCTTCATCGCAATGAAATTGGTGTATCTTGTGGAGTGTGTTTAATACCAATGAAAGATCCAAAAGAACTTAAAAGTCACGTAGAAGAAGTTCATTCCAGTGTTCTTTCAAGACCCAATACGTGTCAAGTTTGCGGGAAACAATATGCTTCAAAATGGAAAGCGTTTGATCATACTAAAAAATGTCATGGAAAAGTATTTAGGACTTGTAAACAATGTCTAGCTGTTTTCACTGAAGATTCTGCAATTAGAGATCATTATGAAACAATACATAATATTCCCAAAGATCAACTTGCAGCATTTGAACATAGATTAGATATTGGGTCGAAAAACGAAGATTTTGGAATAGAGTCTCCTGATATAATAGTGAAAGAAGAACCAGAGGATTTAGAATACGAAGTAGATATGTGCGATGAAGATTCTAGTGACTCGAAAAGGAGAAGGTCCTTAACGGATACGTACGATTGTGAAATGTGCCCAGAAATGTTTGTAAACAGCGATGCACTTTCAAAACATTATCGTAACATGCACAATACTGATCCGGaaagaatgtttaaaagattaaaacagGATGAACAGAGAAGAATGCGTGGTAAACTGAATTTCTCTTGCAAGAATTGTAGGCGACAATTTTGCACTAAAACATTATATTGGAACCATATTGCAACTTGCAGacgaaatatacgaaaagGAGaggaaaatttatctttacgAAATGACATGTTAAGTAGCCAAGaagaatttttgaagaataataatcaaattaagAAAGAGGAGACCACATcagatttaaatattcctgATTTCAATCTCTTTGAAGATATAAATCTTCAACTCTCTGGTCAGAGACCTCTTCCGAATCTTATGCCACTCACTCAGAGGTAA
Protein Sequence: MESRERYQELCRLCASYDAVKMDIFGQEGKNRQLVDKIQACLPFKIAENDRLPKCLCYRCMYNLENFYDFRTACVNAVALLERCLSPSESNGDVTTILTCCNDSEFFEGRKSIPVLIPEAPIVNPNAALGTPPRLNSDGEADHETEEIDNSGTDEATVMDDSEDRHSEEYEMDMETNPSDFLEMTSIVAEEPEESVLKHQDVSTNLSEHTSQQHEVYVCSLCSKAFSSKGHLSLHARIHVGAGDVIGEKVLTDDHTSYKRPYQCDLCHKSYSTAKHRWGHVSTTHRGHPAVTCGYCSRIYSTRTNLEEHIKSRHAGLPAPTEVPLNNAYRPENRYQCNACGKICTDAMELNLHGRICTEGQRLDLSRKNEINDNKVVDSSEASSIGSDDDGKDYRSAEAKLAKNPQLTILKQALTKGDSLKRDFEDKFTTNCKPKKLPKTEHTDFQRTKKWYCESCPQCFTSVNDLKEHEATHDADKPFICILCKKDFFLKSSLSRHIQTLHGVDPCPMVESDKCLKKIVSHNWNESMDLDSYEGKTSSEFPLSPDTNAENEDDHESGQENLIEIETVFVCEICTRDFNDRASLWLHIRATHKEFAAFACGVCLKICADNTQLLNHVNMYHGGSKLLLSEQRRYSCTICGRQHDSRKKLIAHVSIHNVDPNYDPATFVQLNSNYYGENINGNETAEQMLDYEEDSDKVDCYICYKSFPNEDHLIRHQRNAHRSEQLVPAGDPLNPSSLNGGGNRAQYHLFFVCELCGSSHPSKWERWLHVSSSHSNESAIKCDREDCGKIFATKSLRNEHIQHHAIQGSSPNTCEICGKLWGSRVDYWKHVMGVHSDTVPLICGVCLKVFPNVLQLSTHVRSKHWPLTNGDFSCDICGRPYSNKSKMSRHRKIHGFEESCENGAENSENKAEGRMRETELSCELCADLKFTNLEKLCNHRRIVHGLFPCDLCNKCYGRTSHLWKHVNRVHKGHEDVTCPYCMKTSASKDHLAAHISKIHRYEPDSRKDGKDNRQFKTEEVSLHYCEKCNKGFHKRYLLRRHMKGCQNYRKDPGALLTRCRACERIFKDRASLQKHIENHHSTYTCHLCNETITSKLGIMTHNRVKHMDHPDLTCNFGSCRKLFRTKEDLEAHRKDHRYHTTPNVCDFCGDTVENKLKLKMHVLSLHRNEIGVSCGVCLIPMKDPKELKSHVEEVHSSVLSRPNTCQVCGKQYASKWKAFDHTKKCHGKVFRTCKQCLAVFTEDSAIRDHYETIHNIPKDQLAAFEHRLDIGSKNEDFGIESPDIIVKEEPEDLEYEVDMCDEDSSDSKRRRSLTDTYDCEMCPEMFVNSDALSKHYRNMHNTDPERMFKRLKQDEQRRMRGKLNFSCKNCRRQFCTKTLYWNHIATCRRNIRKGEENLSLRNDMLSSQEEFLKNNNQIKKEETTSDLNIPDFNLFEDINLQLSGQRPLPNLMPLTQR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01418483;
90% Identity: -
80% Identity: -