Basic Information

Insect: Bombus superbus
Gene Symbol: -
Assembly: GCA_014737385.1
Location: JACXIK010000041.1:4094346-4096514[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.044 3 8.2 3.8 1 15 210 224 210 228 0.84

2 8 2.8e-05 0.0019 18.3 4.5 1 23 238 260 238 260 0.99

3 8 2.5e-08 1.7e-06 27.8 1.5 1 23 266 288 266 288 0.99

4 8 1.4e-06 9.4e-05 22.4 1.0 1 23 293 315 293 315 0.96

5 8 1.6e-05 0.0011 19.1 1.4 1 23 321 343 321 343 0.98

6 8 4.3e-07 3e-05 24.0 1.6 1 23 349 371 349 371 0.97

7 8 8.7e-05 0.006 16.7 2.3 1 23 377 399 377 399 0.97

8 8 3.7e-05 0.0025 17.9 9.0 1 23 405 427 405 428 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.044	3	8.2	3.8	1	15	210	224	210	228	0.84
2	8	2.8e-05	0.0019	18.3	4.5	1	23	238	260	238	260	0.99
3	8	2.5e-08	1.7e-06	27.8	1.5	1	23	266	288	266	288	0.99
4	8	1.4e-06	9.4e-05	22.4	1.0	1	23	293	315	293	315	0.96
5	8	1.6e-05	0.0011	19.1	1.4	1	23	321	343	321	343	0.98
6	8	4.3e-07	3e-05	24.0	1.6	1	23	349	371	349	371	0.97
7	8	8.7e-05	0.006	16.7	2.3	1	23	377	399	377	399	0.97
8	8	3.7e-05	0.0025	17.9	9.0	1	23	405	427	405	428	0.95

Sequence Information

Coding Sequence: ATGAACAAAGAATGTCCAAGTTGTAGACAAATAATAAATACATCACGTACAAGACTTGTGAAAGATAATTGCGGACACATTAAATGTCGTATGTGTTTAATATATGAAGAACAAGGTTGCAAAATTTGTGTAAATAAGCATAGTGTACAAAATATCGGAAATTACGATTGCTCTCCTTCAGAGAAAAAAGTATTAAATAATACTTCTACTTCTGATAAAGATAATACATCTAATGATATATTACCCTTGGAATTAGTTATTAATAAAAATTCCAAACCCAAAGCAAATAATATTGAATTAACTTCTGTCGATTATACAAATAACTATAAGCTGTGTCCTGAAGACGTACTTAATAAAACAAAAGAGATACATAAATCTTCTACAACAGAGATTAAAAACAAAGTCATGTCAAACAAACTTTCAAACACAGAATCGAACAATATGCCTCTAAATGTGCAACCAGATTCAAGTAAGAATGTAGCAGAAAAATCACCTAGCAATAAAACATCAGAAATTTCCAATGAGAAAGTTACAACGGAACACTCAGAAAAAGAGAAGTTAGAAGGTAAACCAATATCATATCTTCATTATAATCACATTATCGTGTTACCAGGGACACCAGTAAAGTATAAATGCACTATATGTAATAAAGTTTTTGGAAACAAGAAAGGAAAATGTTATCATGATGCTTGTATAACTGGAATTAAACCTTATCAATGTTCTTTTTGTGATAGAAGTTTCATTAAAAAGTCTCACTTTGAATATCACGAAAGAATTCACATAGGATACAAACCATATAAATGTAATCTTTGCGATAAAGCATTTCCTCAGCAAAATAAGCTTAATAGGCACATGCGTTCACATGGGAAAAAACAATTTACATGTCCTAAATGTGACAAAAAGTATTCCAAACAAGATGATTTAAAAAATCACTTAGATGCTCATAATGGAACATCCACATATTCTTGCAAAGCATGTGATAAAACTTTCAAGATGATAAACAATTTAAAACGTCATGTAAAAATACATTCTAATGAAAGACCATATGCATGTGATCAATGCAATAAAAGCTTCAAAGATAAATCTTTGTTACTTCGTCATAAAAAGATACATGGAAAAGATAGACCATTCTCATGTGCACACTGTAGTAAGGTATTTTTGTCTAAAAGTGAATTAAGACGTCATTTGACAGTTCATTCAGATGAGAAGCCATTTTCTTGCAAATTCTGTGAAACTGTGTTTAGAAGGAAAGATAATTTACATAGACATATTAGACATCATCATCCAGAAAGTAATAGTAATAGTAAGATACAGAGTACAATTCTTGAAACCAAAGTAAAATTAACAAAAGCCAAGCAGTTGAATTCTAAACAAAAACAAAATACAAAAAAGACACAAAAAGTTGCTTCTAATTTATTACCAAAAACTCCATCTAAAGTATCAGTGGTTTGTATAAGTTCATGTGACCAAATCAGTTCTAGATTAGATTCAATGGGTAACATCACACCTGTTATAAAAACTACCAATGAAGTGAGCAATGCAGTTTCTGTTATTAATGGACCAATTAATACTAAAAAACTAGATGATAAGTCTGATACCAAAAAAAAGACATTTACGTATACGGAACCAATACCTCTTGCTGAAGCAGTGGTAATAAATAAACGCATTGAGGAAAAGTTATATCCACAAAATGCGTCAAGTCATAATTATTTTCTTAGAAATTGTTTGAATTGTACAGACAAACCATATCCTGCTTTCGTAAATCAAACTTCTCGCACAAATTCTAATCAGTAA
Protein Sequence: MNKECPSCRQIINTSRTRLVKDNCGHIKCRMCLIYEEQGCKICVNKHSVQNIGNYDCSPSEKKVLNNTSTSDKDNTSNDILPLELVINKNSKPKANNIELTSVDYTNNYKLCPEDVLNKTKEIHKSSTTEIKNKVMSNKLSNTESNNMPLNVQPDSSKNVAEKSPSNKTSEISNEKVTTEHSEKEKLEGKPISYLHYNHIIVLPGTPVKYKCTICNKVFGNKKGKCYHDACITGIKPYQCSFCDRSFIKKSHFEYHERIHIGYKPYKCNLCDKAFPQQNKLNRHMRSHGKKQFTCPKCDKKYSKQDDLKNHLDAHNGTSTYSCKACDKTFKMINNLKRHVKIHSNERPYACDQCNKSFKDKSLLLRHKKIHGKDRPFSCAHCSKVFLSKSELRRHLTVHSDEKPFSCKFCETVFRRKDNLHRHIRHHHPESNSNSKIQSTILETKVKLTKAKQLNSKQKQNTKKTQKVASNLLPKTPSKVSVVCISSCDQISSRLDSMGNITPVIKTTNEVSNAVSVINGPINTKKLDDKSDTKKKTFTYTEPIPLAEAVVINKRIEEKLYPQNASSHNYFLRNCLNCTDKPYPAFVNQTSRTNSNQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01417888;
90% Identity: iTF_00233413;
80% Identity: -