Basic Information

Insect: Bombus superbus
Gene Symbol: -
Assembly: GCA_014737385.1
Location: JACXIK010000040.1:7252297-7256319[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00031 0.021 15.0 0.4 2 23 257 278 256 278 0.95

2 11 0.0035 0.24 11.7 0.9 1 23 286 309 286 309 0.95

3 11 0.0002 0.014 15.6 3.3 1 23 365 387 365 387 0.98

4 11 1.7e-06 0.00012 22.1 1.5 2 23 438 459 437 459 0.97

5 11 1.6e-05 0.0011 19.1 0.8 1 23 464 487 464 487 0.96

6 11 4.3e-06 0.0003 20.8 0.3 1 23 524 546 524 546 0.98

7 11 7.3e-07 5e-05 23.2 0.9 1 23 556 578 556 578 0.96

8 11 2.1e-06 0.00014 21.8 1.2 1 23 584 606 584 606 0.99

9 11 1e-05 0.00072 19.6 0.2 1 23 612 634 612 634 0.98

10 11 7.9e-05 0.0054 16.8 4.6 1 23 640 662 640 662 0.98

11 11 0.00031 0.021 15.0 0.4 1 21 668 688 668 689 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00031	0.021	15.0	0.4	2	23	257	278	256	278	0.95
2	11	0.0035	0.24	11.7	0.9	1	23	286	309	286	309	0.95
3	11	0.0002	0.014	15.6	3.3	1	23	365	387	365	387	0.98
4	11	1.7e-06	0.00012	22.1	1.5	2	23	438	459	437	459	0.97
5	11	1.6e-05	0.0011	19.1	0.8	1	23	464	487	464	487	0.96
6	11	4.3e-06	0.0003	20.8	0.3	1	23	524	546	524	546	0.98
7	11	7.3e-07	5e-05	23.2	0.9	1	23	556	578	556	578	0.96
8	11	2.1e-06	0.00014	21.8	1.2	1	23	584	606	584	606	0.99
9	11	1e-05	0.00072	19.6	0.2	1	23	612	634	612	634	0.98
10	11	7.9e-05	0.0054	16.8	4.6	1	23	640	662	640	662	0.98
11	11	0.00031	0.021	15.0	0.4	1	21	668	688	668	689	0.94

Sequence Information

Coding Sequence: ATGGAAGTTTCGAAAAACGATCAATTAGTTGATACATATGAGAAAATCTATGGAAACGAATGCCGAATCTGTTTGAAAAAAGCTGCTGAAATTTGTGAACTTTTTAGAAATGGGGACGCTATTCCTCGAAAACTTATGGCCGTTGCTTCTGTACAGGTTGTAGAAGGAGACGGTTTACCACCAGTGATTTGTTTGCCTTGTAACCAGCGTTTAGATGCATCCTACAATTTTAAATGTCAAATACAAAATTCTGACGAGAAGCTTCGTCAACTTCTGAAGCTGAAATCCTCTTCTAACGATTCTGTTACCAGCGCCAGCATAGTTACAGCAATAATCGCTGACGTGATATCTAGCGTAATATCTTCTGAGAAAGAAAATACAGAAAAGCAAGAAGTTTGTTCTACAAATTTCTGCTCTGATAATTTTTGCTTTACGAAAGATGAAACAGCTTTTTGTCTCAATTCAGAGAAAAACTTGTTTTGTTACGAAAAAGAATCACACAGTCAATTAAACGATACAGAGCAAAGAAAGAGCCTAGAAAATGTAAATGTTTATAAAAGTTTATTAGAGGATGACTCTGTAAGACAGATCGGTTCGATGAAACAAGAGTTTGCTTTATTAGATGATCATATGGTAGAAACTAAAGTTGTTCCATTAAAAGGGGAAGCAAGTATCGAAGAAAGTCAACAAATGTTAGAAGAGACATTAAAGACAGATGGTATTCAAGATGATGATGAAAAACCATTAATTTCACGCACAACTAGATTACGCTGTACGCAATGTATCAAGTCTTTTCGTACAAAAGTGGCCTTGCAGAGACACGCTATTGTACATAAACGTAAAACCAAATTACGTTACGTTTGTTATGTTTGCGATAAACAATATTCTACGCTTGCAAAAGTGAAAAATCATGTTGCAATTTGCCATGAATCTCGCGATAGAAAAGAAAATATTCAACATAAGAGAATTAGTTACGAGCAAAATAAAGCGATTGCGACTGTACAAGACAAGAGGATTAGTAATGTCCAAGATAAAAGGATAAAAATTCAAAAAAATGATGACTCTCCTAAAGAACAACGAAGAAGCTTAAAATTTACTTGCAAAGTTTGTTCAAAACAATTTACTTATCAAAAATCTTTTATCACGCACGCTAAAAGTCATCCGGAGTATAAAGTGGAAGAATTGGACGATTCCTCTCAATGTTCGGTAAAAGAAAGATCTACAGAAACCGTGGAAGAAGAGGAAGAAGAAAATGAAGAAGAGGAAGACGAAGAGGACGAGGAAGATGAAAACCTCCCTGCTGAAAGTTTACAGTGTACTCAGTGTGGGAAATTATTTGCAACAAAAAGAAATCTTAAGAGGCATGTTTCCACACACAGTGGATTGAAATATACGTGTGAAACATGTGGTAAAGGATTCTCAAGAGTGGATAAATTAAAAGATCACGAACAATCAAAGCATAAGGCTGAATTATTTGACAATTCTGATTTGGACGATAAAGAGGACACAGACAATGTAAATAAAGGTGACTGTTTAGAAGGAAGAAAGAAAGATCGTCACAATAGACCTCACAAATGTGCAATCTGCCCTAAATCTTTCGCGCAAGCTCAATCGCTAGCGAATCACATAGAACGTCATAAGCGGGTGAAAGAAACTCAAAAGAGATTTCTTTGCGAAGTCTGTAGCAAGTGTTTTGCACAGAGTGGTTCTCTGGTCGCGCACATGCGTACACATACAGGAGTTAAACCATACGTTTGTAATGTGTGTAGTAGAGCATTTACAAAGAGCACTTATCTACAATTGCATCTGCGTACTCATAGCGGTGAGAAACCTTATATTTGCCAGTATTGTAGCAGGGCCTTTGCACGTGCTAACACATTAGCACGGCACATAACAATGCATACAGGAGAAGCAAAATATCATTGTCAGATTTGTACAAAATCATTTAGAAGACTGACTTCGTTAAATGAACACACTTACACACACACTGGGCAGAGACCGTACGCGTGCAAAATTTGTACAAAGAGATATAACAATGCTGGGTCGCTCTACGCGCATAGAAAGAAGTGCAAGGCACAGCAATTATCCAACCCTGGATTCGCGGTTTCCGTGGAAAATACCGTATCACAACAAGAAGTGGACGTACCACAAGTTTTGATCTATTCCCACAGGAAATTAGTGGAGGATGCAACTGTTGGACAAGTCACGCCCACACCACAATACATGCTCGCAAATGTACACAATCAGAAGAATTTGGGATCAAATATTATACAACCGTTTCCAGTGGATGATTCGAATGTTTATACAATTAATACGAAGCAATTTAAGAACCCTTATTATACAATTTATCCAAACATGTAA
Protein Sequence: MEVSKNDQLVDTYEKIYGNECRICLKKAAEICELFRNGDAIPRKLMAVASVQVVEGDGLPPVICLPCNQRLDASYNFKCQIQNSDEKLRQLLKLKSSSNDSVTSASIVTAIIADVISSVISSEKENTEKQEVCSTNFCSDNFCFTKDETAFCLNSEKNLFCYEKESHSQLNDTEQRKSLENVNVYKSLLEDDSVRQIGSMKQEFALLDDHMVETKVVPLKGEASIEESQQMLEETLKTDGIQDDDEKPLISRTTRLRCTQCIKSFRTKVALQRHAIVHKRKTKLRYVCYVCDKQYSTLAKVKNHVAICHESRDRKENIQHKRISYEQNKAIATVQDKRISNVQDKRIKIQKNDDSPKEQRRSLKFTCKVCSKQFTYQKSFITHAKSHPEYKVEELDDSSQCSVKERSTETVEEEEEENEEEEDEEDEEDENLPAESLQCTQCGKLFATKRNLKRHVSTHSGLKYTCETCGKGFSRVDKLKDHEQSKHKAELFDNSDLDDKEDTDNVNKGDCLEGRKKDRHNRPHKCAICPKSFAQAQSLANHIERHKRVKETQKRFLCEVCSKCFAQSGSLVAHMRTHTGVKPYVCNVCSRAFTKSTYLQLHLRTHSGEKPYICQYCSRAFARANTLARHITMHTGEAKYHCQICTKSFRRLTSLNEHTYTHTGQRPYACKICTKRYNNAGSLYAHRKKCKAQQLSNPGFAVSVENTVSQQEVDVPQVLIYSHRKLVEDATVGQVTPTPQYMLANVHNQKNLGSNIIQPFPVDDSNVYTINTKQFKNPYYTIYPNM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00118159;
90% Identity: iTF_01417854;
80% Identity: -