Basic Information

Insect: Bombus superbus
Gene Symbol: -
Assembly: GCA_014737385.1
Location: JACXIK010000011.1:11650026-11654127[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 2.1 1.4e+02 2.9 7.1 1 23 21 44 21 44 0.92

2 19 3.1e-06 0.00022 21.3 0.3 1 23 50 72 50 72 0.97

3 19 1.9e-05 0.0013 18.8 1.4 1 23 78 100 78 100 0.97

4 19 0.0016 0.11 12.8 0.6 1 23 106 128 106 128 0.98

5 19 2.4e-06 0.00016 21.6 7.0 1 23 134 156 134 157 0.96

6 19 0.0018 0.12 12.6 2.1 1 23 173 196 173 196 0.96

7 19 0.0096 0.66 10.3 0.6 3 23 206 226 204 226 0.95

8 19 6.4e-07 4.4e-05 23.4 0.4 2 23 233 254 232 254 0.98

9 19 0.00023 0.016 15.4 0.6 3 20 262 279 260 281 0.94

10 19 0.099 6.8 7.1 0.7 2 23 316 338 315 338 0.96

11 19 1.1e-05 0.00073 19.6 0.9 1 23 344 367 344 367 0.97

12 19 0.027 1.8 8.9 0.5 2 23 373 394 372 395 0.94

13 19 5.9e-05 0.004 17.2 0.4 1 23 400 422 400 422 0.96

14 19 0.00019 0.013 15.6 0.5 2 23 429 451 428 451 0.94

15 19 6e-05 0.0041 17.2 2.1 1 23 473 496 473 496 0.93

16 19 0.002 0.14 12.4 0.1 1 23 507 529 507 529 0.95

17 19 0.0076 0.52 10.6 3.6 1 23 535 557 535 557 0.94

18 19 4.7e-07 3.2e-05 23.9 1.1 1 23 563 585 563 585 0.98

19 19 7.7e-06 0.00053 20.0 0.1 1 21 591 611 591 612 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	2.1	1.4e+02	2.9	7.1	1	23	21	44	21	44	0.92
2	19	3.1e-06	0.00022	21.3	0.3	1	23	50	72	50	72	0.97
3	19	1.9e-05	0.0013	18.8	1.4	1	23	78	100	78	100	0.97
4	19	0.0016	0.11	12.8	0.6	1	23	106	128	106	128	0.98
5	19	2.4e-06	0.00016	21.6	7.0	1	23	134	156	134	157	0.96
6	19	0.0018	0.12	12.6	2.1	1	23	173	196	173	196	0.96
7	19	0.0096	0.66	10.3	0.6	3	23	206	226	204	226	0.95
8	19	6.4e-07	4.4e-05	23.4	0.4	2	23	233	254	232	254	0.98
9	19	0.00023	0.016	15.4	0.6	3	20	262	279	260	281	0.94
10	19	0.099	6.8	7.1	0.7	2	23	316	338	315	338	0.96
11	19	1.1e-05	0.00073	19.6	0.9	1	23	344	367	344	367	0.97
12	19	0.027	1.8	8.9	0.5	2	23	373	394	372	395	0.94
13	19	5.9e-05	0.004	17.2	0.4	1	23	400	422	400	422	0.96
14	19	0.00019	0.013	15.6	0.5	2	23	429	451	428	451	0.94
15	19	6e-05	0.0041	17.2	2.1	1	23	473	496	473	496	0.93
16	19	0.002	0.14	12.4	0.1	1	23	507	529	507	529	0.95
17	19	0.0076	0.52	10.6	3.6	1	23	535	557	535	557	0.94
18	19	4.7e-07	3.2e-05	23.9	1.1	1	23	563	585	563	585	0.98
19	19	7.7e-06	0.00053	20.0	0.1	1	21	591	611	591	612	0.96

Sequence Information

Coding Sequence: ATGAGCAACATTGTATTGTCAAATGTTATTAAATCGCGAAGAGCAATTTCTCGAGCAATTCACGAATGCATCAAATGCGGAGCCTGCTTCTGTCACATGAGGAAGCTGGTAGAACACCTGAAGAACCTCCACGGCATCGACAGAGCCTTCAGCTGCGACGAGTGCGGCAAAACTTTCAGAAGTCCCATGAACATAGCTCGTCACAAATTAATTCACACTGGTTCCAAAAGATTCGCTTGCGACTTGTGCGACTATAGATCAAACCAAAAGTCGAACCTCGAGAGCCATCGTCGAAGACACACCAGAGACTATTCCTTTAAATGCGAACAATGTGAGAAAGGCTTCTTCCTGAGAACAGAATACCTGGAACATATAAATGTTCATACTAGGAAGCAATTGTACAAATGTGATCACTGTAGCAAGTCGTACCCTTACAAGAAGAACCTGACAAATCACTTAAGAACGCATCATGCGAGTGTCTCGCAGTTAGAATTAAGAAATGACGTGACAAAGAAGCACGTGTGCACAATTTGCCTGGAGGGTTTCACGCGAAAATTGTTCTTGGAGAGGCACTTGAAGCAACGACACGGATTGTACGAGAAAATGAAGCATTTATGCGATCTGTGCGGGGCGGTGTTGTCTTCCAAGAGGAGGTTGATGGTACATAGGCGGGGCCACGTTAACGAGAAGATCGTGAAATGCGATTTATGCGACAAGCAGTTCTCTAGCAAAGAAAACCTCGCTGTTCATCGGCGAGTGCACACTGGGGAGAAACCGTACGGTTGCTCGCAGTGTGGAAGAAGGTTTACACAAAGGACTTCTTTGATATTACATATTAGCCACTGGGGCAACGATCACGACGAGCTTAGCAGCTGCGAAGATTTCAAAATCAAGAACGAGGATATTCTTCTCGATCCTGGACAAAAGTTCGAGGGGAACGAGAAGGTCTGCGACCTTTGTCAAGAAAAGTTCCACTTCGTAACCAGATTAGTAGCGCATCTGAGGATCGTCCATGGTATCCACAGACCCTTCAAATGTGTCACGTGTGGGAAGACATACCCGCAGCAGTTTATGCTAAACGCTCACGTGAAAAAATCTCACACACCTAAAACGATCCCCTGCACTGAATGCAGTTTCATGGGGGTGAATGCCACTGACGTGGAAAGACATACGAGACGACATCATCGAGAAACAAAGTTCACCTGTGAAATCTGTAGCGAGAACTTCGTAGACAAGGATTCCTTGATGACTCACACAACTCTGCATAACTTTATGCAGTTTCAACAATGCAACGCTTGTGGTACCACGTTCAACGACGCGTACAGCCTGAAGGAGCACAACCGTTTGTACCACTACGATCCAACAACGTTGATCGAAGAAAAGCTGGAAGCTGACGGTTCGCAGAACACCACGGAGCACAAATGCGACGTCTGTGGGAAGGTTTATAAATACAAGTCGGTCTTGAAGCAACACAAAGTGAAAGCTCACGGTGATATGCCAAATTACGAGAGACGTCGATATTTATGCGCTCTTTGCGGGAAAGAATTAAAAACCGCGAAAGGCCTCGAAATTCACAATCGATCGCACACCGGTGAAAAGCCTTACACCTGCGAGGTGTGTGGCAAGTGTTTCGCCTGTGAAACATTGCTCAGGACTCATAATGTCACGCACACTGGCGAGAGAAAGTATTCTTGCGACCAGTGTGGCAAAGCTTTCACGCAGAGATCCACGTTGGTCGTGCATAAACGTTATCATACCGGCGAACGACCGTACGTTTGTCCTCAATGTGGAAAAGGTTTCGTCACCAGGACTGTCCTGAACACTCACATGAAGTCCTGTCGTTGA
Protein Sequence: MSNIVLSNVIKSRRAISRAIHECIKCGACFCHMRKLVEHLKNLHGIDRAFSCDECGKTFRSPMNIARHKLIHTGSKRFACDLCDYRSNQKSNLESHRRRHTRDYSFKCEQCEKGFFLRTEYLEHINVHTRKQLYKCDHCSKSYPYKKNLTNHLRTHHASVSQLELRNDVTKKHVCTICLEGFTRKLFLERHLKQRHGLYEKMKHLCDLCGAVLSSKRRLMVHRRGHVNEKIVKCDLCDKQFSSKENLAVHRRVHTGEKPYGCSQCGRRFTQRTSLILHISHWGNDHDELSSCEDFKIKNEDILLDPGQKFEGNEKVCDLCQEKFHFVTRLVAHLRIVHGIHRPFKCVTCGKTYPQQFMLNAHVKKSHTPKTIPCTECSFMGVNATDVERHTRRHHRETKFTCEICSENFVDKDSLMTHTTLHNFMQFQQCNACGTTFNDAYSLKEHNRLYHYDPTTLIEEKLEADGSQNTTEHKCDVCGKVYKYKSVLKQHKVKAHGDMPNYERRRYLCALCGKELKTAKGLEIHNRSHTGEKPYTCEVCGKCFACETLLRTHNVTHTGERKYSCDQCGKAFTQRSTLVVHKRYHTGERPYVCPQCGKGFVTRTVLNTHMKSCR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00361060;
90% Identity: iTF_00684909;
80% Identity: -