Bsor001492.1
Basic Information
- Insect
- Bombus soroeensis
- Gene Symbol
- -
- Assembly
- GCA_014737365.1
- Location
- JACXIL010000263.1:2031123-2037365[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1e-05 0.00098 19.5 5.9 1 23 420 443 420 443 0.97 2 10 1.3 1.2e+02 3.5 0.3 5 23 450 469 449 469 0.94 3 10 0.00055 0.051 14.1 1.2 2 23 476 497 476 497 0.96 4 10 0.79 74 4.2 3.7 1 20 524 543 524 545 0.89 5 10 0.00054 0.051 14.2 2.0 1 22 647 668 647 668 0.96 6 10 3.4e-05 0.0032 17.9 1.3 2 23 676 698 676 698 0.95 7 10 0.0007 0.065 13.8 4.5 1 23 708 731 708 731 0.95 8 10 7.4 6.9e+02 1.1 0.4 3 19 752 768 751 770 0.84 9 10 0.24 22 5.8 3.6 1 23 778 801 778 801 0.88 10 10 0.0069 0.64 10.7 5.8 1 23 812 835 812 835 0.94
Sequence Information
- Coding Sequence
- ATGGCTCGAGTGTTAGTTTACGTACGCCCTGTCGATGCAATCTTCACAGATATAAAATTGGACAGGAAAATAGATCCTTCTGAATATGCAATAAGAATAAAGGAAGAGCCAATCGATCCAGAGGTCTGCGATGATTTGTCGCCAGTCGATACGAATACAGGGAATGAAAATGAAATAGCGACGTTTAAAGGTGAATCTTCGGATGGCGTTTATTGTAGAAATCGAGAGTCCGCGTTTCCTCAAGAAAGAAAGTCGAATCATTCGGATGGTATAGTCATGGCAGAATCAAATACTTCACGCAGCCCCTCCCCCAAAAACATAAATAGCTCAATAAATATATCTTTGCAACTATCTAATTGTTCAAACAATACACCCACCAAGGGTTCGAGCAGCAAGATCAAGTCTACGCATCCGAAATGGTTAAACGATTCGCATGGTACGCCTTCGAAAAGGATGAAACAGACCGTCCTTACAGACTTCATATCGCTGTACAAAGACAAACCGAATGACAAATGGGTTAGCCCGAAAAAAGTTATCGACACGGAGAATATTCCTGTTACTGCCACTATTATTCCAACTTCAACGCTCGACACATTTAGTAACAAGGCATCAACGGCTTCACAAGTTATTCAGATGTCTACTTCTGTTAAGCGAATCGAATCTCCTGTTAGGGAAAGACCATTTGTTCAAATTCATGTGAATTCCAAAACAATGATATCCTTATTAAGGAACGAAATAGAAGCTGAATCTGAAAGCTCTAAAACCTCGCACAATATGTCTTACAACCTTAGGCCAGTGAAAAGATGTTCTTCTTCTTTATACGATTTTTACGATTTATTGGAGTTTGAGACCTTTGGAAGATCAAGACAATCTTTTGAAAGAAACAAATCCCCCTATATATTTAAGCAAAGTAAAAGATCTGCAGCTGAAGTTAAGTGTAAAGAATGTGTGGTCCGTTTGGAGAAATGCGACAAATTCTTGGAGCCTACTAGTTTTGTGTCAAACGAAAACGAAAACGAAAACGAAAACGAAAACGAAAACGAAGACGCTTTCAAACAAGCAGTATCGAAAAATGTGAAAGAGGAATTTGAAGGTTTTCGTGAAACAAGCTCGGCAGATAACTTGCCTTTGAAAGCTGACACGATTGCGTCAAAGCGATTCAATGAATTTGTAAAATCTTTCTCTGATAGATTAATCGTGCCTCAACAAGAATCGATTGAGTTTAAGAAGAACTTCAAGGTCAATCGGCAGAAAATATTTCAATGTCATATTTGTAAAAAATCGTTTTCTTTGAAGGAGAACCTGCACGAGCACATGAAATTGTTCCATGCGATTTATATGTCGAGCATATGCAACGCGCGTTACACGTCCATGAATAAGTTACTAACTCACTATCTACGTCAGCATGTTGTGTTTAAACGAAGGGAATGTTGCGTGTGTTATGAGAAGTTTGACACGTCGGCATTGTTGAAGCGGCACATGATTTTGCATTGTTTGAAGACCATAAGATCAAAAAAGGACGCTCTACCGGTTGATGTTGAAATAAATTGCAATGCATTCAAGAAACAACACAAATGCAAAGGTTGTCGCAAGCGATTTTGGCTATACTCATGTTTGAAACAACATGAGAATGTATGTCGTCGAATGAAAGTCGTAATACATAAACAACGTGTACCTTGTGTAAACGGTTGTTTGTCTGGGCCCTTGAAAGAACCAAGTGACATGGAACTCGGCATAGTACAGTCACCTGATTTGGAACAAATGTTGGATGTTCCGGGTAGGACGACAAGATCTTTGGAAAATTATTTGGCTCCGGGTACGCTTATTACGGATGATACTTCCCCTTCGTCATTCGATACAGCTGCAAAGAACAAAAGGTTGCTTAATGGGATTGCATGCGTAAAGGGTTACCAAGCGGACAAGATGAACAGAACAAAGTTTCCTTGCACTACTTGTGGAACACAATTCCGAACATTTCAAAATTTGTGCATACACGAGCGCACCTATTGCCAAACAGCCACAGAAAAGTGTAACGTTTGTAACACGATGTTTTCCACTAAAAGGTTATTAAAACTTCACATGCTTGCTACTCATACGCCTTCGTGCTCGGTGAACTACAAATTCTTTTGTAAGTTCTGTAATCAAGGATTTGTTAAGAAATCGAATCTTCAAATTCACGAACGACACTTCCATATTGGGCAGGATCCTAGACTGGTGCTGAATTCCGATTGCGTTTTGAAAGATAAACCAATCTGTAATATATGCCATTTGTTATTCGAATCCCATGAACGTTTTGTCGATCATAACATGTATTATTACAAGGGCAATGATTTTTTGTGCGCAATATGTGGTAAGTCGTTTCAAGGAATGTACAAGTTTCATCATCACAACAAGTTGGAGCATTATCCGGACAAACTATGGAAACTGTACCCTTACAAATGCGATACTTGTAACGAAGGCTTCAGCTACGAATCGCATTTCCACGCACATAAGCTACACGTTCATTCGCACGATCCGCCCGCTGACGAGGCGCGCGACCGCGATACATCGGATCGGACTTTTCGCACGTGTTCATGA
- Protein Sequence
- MARVLVYVRPVDAIFTDIKLDRKIDPSEYAIRIKEEPIDPEVCDDLSPVDTNTGNENEIATFKGESSDGVYCRNRESAFPQERKSNHSDGIVMAESNTSRSPSPKNINSSINISLQLSNCSNNTPTKGSSSKIKSTHPKWLNDSHGTPSKRMKQTVLTDFISLYKDKPNDKWVSPKKVIDTENIPVTATIIPTSTLDTFSNKASTASQVIQMSTSVKRIESPVRERPFVQIHVNSKTMISLLRNEIEAESESSKTSHNMSYNLRPVKRCSSSLYDFYDLLEFETFGRSRQSFERNKSPYIFKQSKRSAAEVKCKECVVRLEKCDKFLEPTSFVSNENENENENENENEDAFKQAVSKNVKEEFEGFRETSSADNLPLKADTIASKRFNEFVKSFSDRLIVPQQESIEFKKNFKVNRQKIFQCHICKKSFSLKENLHEHMKLFHAIYMSSICNARYTSMNKLLTHYLRQHVVFKRRECCVCYEKFDTSALLKRHMILHCLKTIRSKKDALPVDVEINCNAFKKQHKCKGCRKRFWLYSCLKQHENVCRRMKVVIHKQRVPCVNGCLSGPLKEPSDMELGIVQSPDLEQMLDVPGRTTRSLENYLAPGTLITDDTSPSSFDTAAKNKRLLNGIACVKGYQADKMNRTKFPCTTCGTQFRTFQNLCIHERTYCQTATEKCNVCNTMFSTKRLLKLHMLATHTPSCSVNYKFFCKFCNQGFVKKSNLQIHERHFHIGQDPRLVLNSDCVLKDKPICNICHLLFESHERFVDHNMYYYKGNDFLCAICGKSFQGMYKFHHHNKLEHYPDKLWKLYPYKCDTCNEGFSYESHFHAHKLHVHSHDPPADEARDRDTSDRTFRTCS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00219393; iTF_00230913; iTF_00226211; iTF_00218695; iTF_00226893; iTF_00215313; iTF_00215311; iTF_00222802; iTF_00226867; iTF_00222804; iTF_00217332; iTF_00220830; iTF_00219382; iTF_00222776; iTF_00222775; iTF_00226846;
- 90% Identity
- -
- 80% Identity
- -