Basic Information

Insect: Bombus soroeensis
Gene Symbol: -
Assembly: GCA_014737365.1
Location: JACXIL010000171.1:2088457-2092191[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0021 0.2 12.3 3.6 2 23 205 226 204 226 0.95

2 12 0.05 4.7 8.0 4.7 3 23 231 252 230 252 0.94

3 12 0.00028 0.026 15.1 1.9 1 23 261 283 261 283 0.97

4 12 6.9 6.4e+02 1.2 0.2 2 10 290 298 289 311 0.82

5 12 0.015 1.4 9.6 1.1 1 23 317 339 317 339 0.98

6 12 0.0018 0.17 12.5 4.0 1 23 342 365 342 365 0.97

7 12 0.31 29 5.5 3.3 1 22 380 401 380 404 0.89

8 12 0.0022 0.21 12.2 0.4 1 23 418 441 418 441 0.98

9 12 0.062 5.8 7.7 2.4 1 23 447 471 447 471 0.97

10 12 0.0015 0.14 12.8 0.1 2 23 478 500 477 500 0.91

11 12 8.9e-08 8.3e-06 26.1 1.0 1 23 506 528 506 528 0.97

12 12 0.00059 0.055 14.0 7.2 1 23 534 557 534 557 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0021	0.2	12.3	3.6	2	23	205	226	204	226	0.95
2	12	0.05	4.7	8.0	4.7	3	23	231	252	230	252	0.94
3	12	0.00028	0.026	15.1	1.9	1	23	261	283	261	283	0.97
4	12	6.9	6.4e+02	1.2	0.2	2	10	290	298	289	311	0.82
5	12	0.015	1.4	9.6	1.1	1	23	317	339	317	339	0.98
6	12	0.0018	0.17	12.5	4.0	1	23	342	365	342	365	0.97
7	12	0.31	29	5.5	3.3	1	22	380	401	380	404	0.89
8	12	0.0022	0.21	12.2	0.4	1	23	418	441	418	441	0.98
9	12	0.062	5.8	7.7	2.4	1	23	447	471	447	471	0.97
10	12	0.0015	0.14	12.8	0.1	2	23	478	500	477	500	0.91
11	12	8.9e-08	8.3e-06	26.1	1.0	1	23	506	528	506	528	0.97
12	12	0.00059	0.055	14.0	7.2	1	23	534	557	534	557	0.96

Sequence Information

Coding Sequence: ATGTGTGAAAATTCAATACTACAGGTAGTACAAAAATCGCCTTCAGAAGTTAATGAAGTTAATGTTGTTGATTATTTACAAGACTGTGTAAATAAAGTTTTAACTAAAGATTCAGGAATACATTTATCTTCTACGCCAATATGTAATTCAAACATTGAGTCACAATTGAAAAACAAAAATAATGATTATAAAAATAATATTGAATTTGATTTTATAAAAATTGAAAACATTTTTTTACAAAATATACCAAATTCTCAAAATGAATTGAGATTTAAATGTGTAGAGCAAAATCATTTAAAAATGAAAAATGAATCTGCAGAATCTATAACTCATTTAGATGAAAAGAGTACTAATAGTATTAAATTAATAAAAATGAATAATATAATTGATACAGAAGATGTAAAAAGTAACAATATCCCTATTAAAGTAAAAAAGGCTTTTGTACTTGAGAAAAATATTTTTACTCAAGTTAAAGATAAATCATATAATGTAGAAGTTAGGAATGAAAATTTGAATGATGAAAATAATGATCCTGAAACTAAATTTATAACATCAACTAATCAGAGTAAAATTAAAATCAATAATCTAGTTATGCTAAATAAACAAGTTAAAACATGTAGTCAATGTTCAATGACATTTAGATACAAAAGACATTTAGATCGGCATCTGGAAGGTCATCAAAAAAATAATTGTTCTCACTGCAGTGCAAAATTTGCCAGGCGTAAACACCTTGATATACACTTATTTCGTTCACATGGTGAAAGAGTAACAAAATATCCACATTCTTGTGATGTATGTTCCCGTAGTTTTCCTAAACGTATTTTATTAAATCGCCATCGTGCAAAACACAACTATGAAAATGGCAAAGTTTGTTCAGATTGTGGAGAAATGTTGAAAGCAGAAGAAGATGATAAGGAACACAAAGAAAATCATTGCACACGAAAACAATTTAAATGTAAAAGATGTTTACAAACATTTAGTATTGAACAGACATATATAGCTCATATCCAAAATCATGATAATCATAAATGTCCAAAGTGTGATGTCACTTTTGCCTCCAAAAAGAAGGTGCATGAACATTATAAAATGGTGCATTCTTCAAAATTGAACCATAATAAAATATCAAATAATGGTATTTACTTTTGTACTGACTGCAGGCATACTTTTTTAAAAAAGGATGATTATTCTCGTCATTTAGATTCTACATTACATCTTAATAAAGTAAACAGGGAAATATTCCAAAGAGACATTTTTACATGCCTAATTTGTTCTAAGAAATTAATTTCACAAAGAGCTCTCGATCAACATGTTAGACGTATACATAAAGAGGAAAAAAGATTTACATGCAATATATATGGTTGTACATTTCTGTGTGCAAGAAAATCAGACTTGGATAGACATAGACAATTACATGTAGAACAAAGAAATATCGTATGTGAACAATGTGGTAAAACTTTTACTAGTGTTAGTATTCTTAATGATCATGTTCTCTATATACACAATAAGGAAAGACAATTTATATGTGAAGAATGTGGTAAAGCATTTAAACGAAATAGTTTATTAAAAAGACATAAATTATCTCATCAACAATATCGGCCATTTGCTTGTCTTCAATGCAGTACTGCTTTCAAGAGATCCCATCATCTTTCTCGTCATATGGAAACTTGTCATAGAATTACACTTGAGAAGAAAAAGAAGGTTGTAAAACTTATGAAAACAGAAGATGGTCATCTTGTTCCAGTACCAGAGAAACCAAAAAAGCTTAAACCTAAAAAATTAAAAATGAAAGCAGGATCTAATAACATCTTATCGTCAGATGACAAACCTGTTGCTTTTCAAAACATGAATATTAATAACAAATATTCTGATTCATATTTGGAAGCACAAACATTGCTTAATTCTAATGACTTATGTGAAAATTCAGCATTGCCATTAGAGCTTACAAATGTATTATCGAACACAGATTTTGCCCCTCAGGTTCTTTCATTAGTAGATATTAACGCAGAACAAATTGTGACTGTAGAAGTTACTACTCCAAAAACATTAATAATGAATGATCTTGTAGATCAATTTGAAATAAATTGTAATGAAATATTGAATCTAACAAGTTATCAAGATTTAGAACTTCAGCATGGAATTTCAAATACAGATCAAAATTTGTATGATCATATAAATTATTCTGAAGTATCATTAGGAACTGTTGAAGGAACATCATTTTTTGTGGATTCGAATATTAACAAACTAGATACTTTACCAATAGAAAATTATTTGAATCAATCGTTTCCATCGTTTTTAAATTTTTAA
Protein Sequence: MCENSILQVVQKSPSEVNEVNVVDYLQDCVNKVLTKDSGIHLSSTPICNSNIESQLKNKNNDYKNNIEFDFIKIENIFLQNIPNSQNELRFKCVEQNHLKMKNESAESITHLDEKSTNSIKLIKMNNIIDTEDVKSNNIPIKVKKAFVLEKNIFTQVKDKSYNVEVRNENLNDENNDPETKFITSTNQSKIKINNLVMLNKQVKTCSQCSMTFRYKRHLDRHLEGHQKNNCSHCSAKFARRKHLDIHLFRSHGERVTKYPHSCDVCSRSFPKRILLNRHRAKHNYENGKVCSDCGEMLKAEEDDKEHKENHCTRKQFKCKRCLQTFSIEQTYIAHIQNHDNHKCPKCDVTFASKKKVHEHYKMVHSSKLNHNKISNNGIYFCTDCRHTFLKKDDYSRHLDSTLHLNKVNREIFQRDIFTCLICSKKLISQRALDQHVRRIHKEEKRFTCNIYGCTFLCARKSDLDRHRQLHVEQRNIVCEQCGKTFTSVSILNDHVLYIHNKERQFICEECGKAFKRNSLLKRHKLSHQQYRPFACLQCSTAFKRSHHLSRHMETCHRITLEKKKKVVKLMKTEDGHLVPVPEKPKKLKPKKLKMKAGSNNILSSDDKPVAFQNMNINNKYSDSYLEAQTLLNSNDLCENSALPLELTNVLSNTDFAPQVLSLVDINAEQIVTVEVTTPKTLIMNDLVDQFEINCNEILNLTSYQDLELQHGISNTDQNLYDHINYSEVSLGTVEGTSFFVDSNINKLDTLPIENYLNQSFPSFLNF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00983796;
90% Identity: iTF_00233449;
80% Identity: -