Basic Information

Insect: Bombus soroeensis
Gene Symbol: -
Assembly: GCA_014737365.1
Location: JACXIL010000063.1:255831-258608[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.017 1.6 9.4 0.2 6 21 12 27 6 28 0.86

2 14 7.2 6.7e+02 1.2 0.0 2 20 34 52 33 54 0.89

3 14 0.77 72 4.2 0.4 1 12 236 247 236 256 0.89

4 14 4.5 4.2e+02 1.8 0.1 8 23 352 367 351 367 0.92

5 14 0.00019 0.017 15.6 0.2 2 23 371 392 371 392 0.97

6 14 0.00093 0.087 13.4 4.9 1 23 403 425 403 425 0.97

7 14 0.029 2.7 8.7 0.1 1 23 444 465 444 465 0.76

8 14 0.00055 0.051 14.1 0.1 2 23 471 492 470 492 0.95

9 14 3.9e-05 0.0037 17.7 4.8 1 23 521 543 521 543 0.99

10 14 1.7e-06 0.00016 22.0 3.7 1 23 549 571 549 571 0.96

11 14 0.0009 0.084 13.5 3.9 3 23 579 599 577 599 0.97

12 14 1.2e-06 0.00011 22.5 0.8 1 23 605 627 605 627 0.98

13 14 7.6e-05 0.007 16.8 0.2 1 23 631 653 631 653 0.99

14 14 0.00032 0.03 14.9 0.2 1 23 661 683 661 683 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.017	1.6	9.4	0.2	6	21	12	27	6	28	0.86
2	14	7.2	6.7e+02	1.2	0.0	2	20	34	52	33	54	0.89
3	14	0.77	72	4.2	0.4	1	12	236	247	236	256	0.89
4	14	4.5	4.2e+02	1.8	0.1	8	23	352	367	351	367	0.92
5	14	0.00019	0.017	15.6	0.2	2	23	371	392	371	392	0.97
6	14	0.00093	0.087	13.4	4.9	1	23	403	425	403	425	0.97
7	14	0.029	2.7	8.7	0.1	1	23	444	465	444	465	0.76
8	14	0.00055	0.051	14.1	0.1	2	23	471	492	470	492	0.95
9	14	3.9e-05	0.0037	17.7	4.8	1	23	521	543	521	543	0.99
10	14	1.7e-06	0.00016	22.0	3.7	1	23	549	571	549	571	0.96
11	14	0.0009	0.084	13.5	3.9	3	23	579	599	577	599	0.97
12	14	1.2e-06	0.00011	22.5	0.8	1	23	605	627	605	627	0.98
13	14	7.6e-05	0.007	16.8	0.2	1	23	631	653	631	653	0.99
14	14	0.00032	0.03	14.9	0.2	1	23	661	683	661	683	0.97

Sequence Information

Coding Sequence: ATGGGCTCGTTGAATCTCATTTGCCCGATGTGCTGCGGTGAAACGTTTAACAATCCACAGTCATTAAAGTACCATTTATTAAGCATGACGGACAACCTATACTGTCCTAGTTGTTCGCAGCGATCTGACTCGGTAATGGCACTCATTCAACATTTGGACCGATGTGGACAAAGCGTTGAATCAGAGGCATCATCTGAATCAAAGTACGAGCCTAAGGAAGAAACTCAACAAGAATCTCAACCGGATACAGAAGTGCTAATGGACACAAATGTCGAAGGGATAGATCAAAGTTTTCTAGCAACTGTAAATGATAGTGGAATTATGATAGTTGGAGGACCTCAAACTATACAAGTTGATGAAAATGGAGATATTAAAGTCGTAGAAAAGATGGAAACTGAAGAGACACAAATGGAGCAAAATTCTCTGGAATTTAAGATTACAAAAAAAGTTCCTAATATCACAAGCAAAGCAGAAGAGAAATCTTTATCCCAAGATCAACTAGTAACAATTTCAACCACTTCAGAGACAGATGATAAAAACAGAAATAAAAATGTAATTACTATTTTACCTGATGGGTCAGAACTTCTAGATGGAGAAACTGGTGCCCTGATAAATATGGATCATATAAATGATGTAGGTGAATTAGATGAAGATGGACTTCTACATGTTAAACAAGAACTTTGTGAGATAGAACCAGAAGCAGTTTATAGTTGTACTAGTTGTGATATGAGCTTTAATTCTGTTGTGGAACATATAAAACAATTTCATGATGGACAAGAAGTATTACTTGAAATAGCTGATCAGTTAGATGATATACCTACAGTACCTGCAACTAACACCTTACATTCAGAATCAGGAAATGTAATCAATACTAGACAAAGACAGAGTATGAATACTCTGCGTACAGAAGAGTGTGTAGACAGTGAAGGAAGATTATATACAAGAAAAGTAGTACAAATAGAAAGATTCTGGGATAGAACTCCAGCACAAACATCGCTTCAATCTACTAAAGCACCAATGATTGAAAAGTTCTTTTCCAATGTAGAAGGAGTGAAACAGTTCTCCAAATTAGGAAACTTCCGAGTGCATGCATGTCTTCACGGCAATAATCGTTGCGATAGTTGTGACCAAACTTTCGCAACACCGAAAGCATTACAACTACATGCAAAGGTACACGAAGGTGAACCTGATCCAAATCAAAAAACTTTCATATGCGAAACTTGTGGTACAGAATTTTGTTCGCACAAAAGCTTGCGCTTGCATTCTCGAATGCACGCGCCGGTCAGAGCAAGGCACGTTGATGCACCTGAAGGAACACCTAGTGCAACATTTACGTGTCCCGAGTGTGGTAAAACGTTAGCGGAATCATACAAAGAAGCACACATGGCATTACATTCTGGTGACTCTGTAACTTGTACTGTATGCAATAGAAAATTCGATTCTGCTGATAGCTTAGCAATGCATGCCGCAGTACATACAGAACTAAACCAACCACATTCGCCAACACCACCTACTACTGAAACAGCTACAACTGCCGAACCCGCAGAAAGTCAAAAGCCTTATCAGTGTCAACATTGTGGTCGAAGATTTACAAGACCTCACGAGAAAGTGAAACACGAACGTATTCATACCGGAGAAAAGCCACACGCGTGTGAAGTTTGCGGTAAAACTTTTCGTGTTTCTTATTGTCTGACTTTACACATGAGAACTCACACTGGTGTCAGACCATATGGATGCCAACATTGTGGTAAAAGATTTAAAGCTTCTTCTGTGTACAATCATCATTTACTTACACATGGGGAAGAGCGTGCTTACACGTGCCCTTATTGCCCAAAAACTTTCAAAACACGTGTTCAATTAGCAGGACACAAAAACAGCCACACTAAACCATTTCGATGTACTGAGTGTTCCCGTCCATTTGCTTCCTTATACGCCGCACGTGCTCATATACAAACTCACAAAAAAGACAATAATCTAAAATTCAGTTGTTATATTTGTGGTGCATCCTATGGTAGAGCATTTGCATTGAAAGATCATTTGAAACAACATGGTCAAGATGTGATAGCTCCACCGGAGCCTGCGAGAGAAGAAGAAATTCACGAAGGAGAAGACTTTTTACTTGCAGAAGAAGAAGTTGAGGATGATGAACTAGTTATTCCGTCACCGTTACCCGTTGCGCAATCATCAGAAGCTGATGACACAGAATGA
Protein Sequence: MGSLNLICPMCCGETFNNPQSLKYHLLSMTDNLYCPSCSQRSDSVMALIQHLDRCGQSVESEASSESKYEPKEETQQESQPDTEVLMDTNVEGIDQSFLATVNDSGIMIVGGPQTIQVDENGDIKVVEKMETEETQMEQNSLEFKITKKVPNITSKAEEKSLSQDQLVTISTTSETDDKNRNKNVITILPDGSELLDGETGALINMDHINDVGELDEDGLLHVKQELCEIEPEAVYSCTSCDMSFNSVVEHIKQFHDGQEVLLEIADQLDDIPTVPATNTLHSESGNVINTRQRQSMNTLRTEECVDSEGRLYTRKVVQIERFWDRTPAQTSLQSTKAPMIEKFFSNVEGVKQFSKLGNFRVHACLHGNNRCDSCDQTFATPKALQLHAKVHEGEPDPNQKTFICETCGTEFCSHKSLRLHSRMHAPVRARHVDAPEGTPSATFTCPECGKTLAESYKEAHMALHSGDSVTCTVCNRKFDSADSLAMHAAVHTELNQPHSPTPPTTETATTAEPAESQKPYQCQHCGRRFTRPHEKVKHERIHTGEKPHACEVCGKTFRVSYCLTLHMRTHTGVRPYGCQHCGKRFKASSVYNHHLLTHGEERAYTCPYCPKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAARAHIQTHKKDNNLKFSCYICGASYGRAFALKDHLKQHGQDVIAPPEPAREEEIHEGEDFLLAEEEVEDDELVIPSPLPVAQSSEADDTE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00625657;
90% Identity: iTF_00226756;
80% Identity: -