Basic Information

Insect: Bombus sonorus
Gene Symbol: PRDM1
Assembly: GCA_029958995.1
Location: JARWAU010000003.1:15506801-15511253[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 2.2e-05 0.0024 18.8 2.5 1 23 756 778 756 778 0.99

2 5 6.5e-06 0.00072 20.4 5.1 1 23 784 806 784 806 0.98

3 5 1.3e-06 0.00014 22.6 4.2 1 23 812 834 812 834 0.98

4 5 0.00086 0.095 13.8 1.5 1 23 840 862 840 862 0.97

5 5 5.7e-05 0.0063 17.5 0.2 1 22 868 889 868 889 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	2.2e-05	0.0024	18.8	2.5	1	23	756	778	756	778	0.99
2	5	6.5e-06	0.00072	20.4	5.1	1	23	784	806	784	806	0.98
3	5	1.3e-06	0.00014	22.6	4.2	1	23	812	834	812	834	0.98
4	5	0.00086	0.095	13.8	1.5	1	23	840	862	840	862	0.97
5	5	5.7e-05	0.0063	17.5	0.2	1	22	868	889	868	889	0.96

Sequence Information

Coding Sequence: ATGGAGGCCAGCGAGTGGGATCACGCGACCTTGAGAGAAGAGGAATTCGAGCAGCATGCCGTATATTTGGTACCGGATGTGGCGGCATCGTCAGGCGATACCAATCGTGCGGAGGCATCCCTGCCAAGAAATTTGGTCCTTAAACCTTCTCAGGCCCTCAACGATGTACGTTCCTCCGCCAAAGAATCCTTTCTCGAGACCTCCTCGGTTTTGGGAGTGTGGAGCACAAGTTACATTCCCAAGGGAACACGGTTCGGTCCTCTCGTGGGACAAGTGTACACCAAGGACTCGGTGCCGGCCGACGCGAACCGGAAGTACTTCTGGAGGGTATACAAAAACAACGAGCTGTTCTATTACATCGACGGTTATGACGTCCAGAAATCAAATTGGATGCGTTACGTAAACCCGGCTTATTCGTCCGAATCGCAGAATTTAATAGCATGCCAGTATAAGATGAACATTTATTTTTACACAATCAAACCAATACTACCGAACCAAGAGCTTCTGGTGTGGTATTGTCGAGAGTTCGCAGAAAGGCTCAATTACCCACTAACGGGTGAATTAATGCTTCAAAGAATACGACAACAAGTACAACAATCTACGTTACCAACGGAAATTCCATCTACGGTGGACTTGGTGTCACCGTTAAAAGATTCATCGATTTACGAGAGACGCTCGCAAATGACCCCAACGGACGGTTCCGTTAGATCGGACGAAGGCTATCATTCCAATGGTTATCACGACGAGATCCTCACGCCCCCGGAAGAGAGCAGCGAGTCGGACTCGGAGAACAATTACGTGCTAGATTTCAGCAAGAACGCGAAAACGTCGGTATGCAACAACGAGGTGCTCAAACAGGACAATGCAGTTGTGAAGAACGAGTACAGGAAGGTTAAGATCAAGATCACCAAGACCTACGGGAACTTCCAGGCGTCGAAGAACTTAGACGCTAACGGAAAGGACAAAGATCAAGAATTGCCGAGCAGAGCTGTGACCCCGGAACTGAAACCGGTGTCACCCATAATTCTTCAGAAGAACGCCGTCCTGACGACGGTAACCGAAGATGAAATTCCAGAGAAAAAGTCCTTTTACGAGTCCGATGTCAAGACTGCTTTGCCCGTTTCCGGGAGACCAGCCTATCTGACCAGCCCGAGTAACTCTATCCTCGAAAATATCCTTCTTCGTAGCAGTACCGATAACAATAACAACAGTCACAACCATCATCACAATGGAACGCAGCAACACCATCAGATTCACCATCAAACGCATGCCGATTCGGTCACGCCACCGCCATCCAGTCCAACGGAAATGGCGTACTCTTACAAAAAATCTCATCGCTACGGAAACATTCTACCTTGCAGTCCCGATTCCAGTTCGAATCTGCCTATGCAAGCGGACACGTGCGTCAATTCCACTACCAATGGTAACAGCACGCTGCCGATGCAAAGTCCGACGAGTAACTTGCATTCGAGCACGGGAAACCTTCACTCGAGTACAGGCAATCTACACTCCAGTACCGGACCCAGCAACGTTCTACAGTCTCATCCAGGGAACATCCATTCGTCCAGCAATTCCAACAATCACCATTCCAGCGCGAACGTTCTGTCGTCTAGCACGGTACTGACATCCACGAGTAACCTTCACTCTTCGACAACATCCAGTAGTTGCCCGCCTAAGAGAAAGACCAAGAGTCCGTCACCGTCTGCCAATCCCACGAGTGCGTCCACCCCGACGATCTTGTACTCCAGTTCCGGCGGATGTCAAATAGAATCCAGCCCGGTGTATCCGACCTCCGCGGCGAACAGCAATCAGAGTGTTTCGCCCATTTCACCTATTCAATCGCCTTCGTCCTATCCCTACGGCATTTATCATCAGAATGGCTCGCTGCATCACAACGTAGCGCCATTGTCTATCAATTGCACCGCCTATTCGCCAACCCCTAGCGGAAACGTGGTTTACGAGAGAGCCGATGGAAGAAGGCTGGAGGCTGCCACGAGCAGTCACCAATTGCCGACCTCGTCGACCATGCAAATCGACAGTAACCAAACGTTAATAGCTGGCACGCACAATCTTCACCTGGGTCATCACCCTGGCCTCACCATACATGCAAACTCTTCGTCATTAAACCGATACTCGCCCGCGAGTTCTTTATCCCCGGACGACCACGGTTGTTCGCAGAGTGGTTCGTTGAGTCCGAACTCGCAAGGATCCAGGGGCTACAGGTCGTTACCATACCCATTAAAGAAGAAGGACGGAAAAATGCACTACGAATGCAACGTCTGCTGCAAGACGTTCGGCCAACTGTCGAATCTCAAGGTGCACCTGAGGACTCATTCCGGTGAGAGACCATTCAAGTGTAACGTTTGCACCAAGAGTTTCACTCAGCTAGCTCATCTACAGAAACATCATCTCGTGCATACAGGTGAAAAACCACATCAATGCGAAATCTGCAAGAAGAGGTTCAGCTCGACCTCAAATCTGAAGACTCACCTGAGACTGCACTCCGGCCAAAAGCCCTATGCTTGTGACCTGTGCCCCGCGAAGTTTACTCAGTTCGTTCACCTCAAGTTACATAAGAGGTTACACACGAACGAAAGGCCCTACACCTGTCAAGGTTGCGACAAGAAGTACATTAGCGCGAGCGGTCTTAGGACCCATTGGAAGACAACCAGTTGCAGACCAAATAATATCGAGGATGAACTTGCCCTAGCCGCGGCCGTGGGTTCGCCGACGTATTACGAATACGGCCCGGACATGAACGTCGGAAATATGCCGAAGGAATGCGAACTGGAGCACATCGATAATTACGAGAGGCACGGATCCACGCATGGCCCACACTCGACGTCTCTCCACAACCTGGAGAATTCCGTAAGCCGGCCAAGCGTCATAGAGACCTCCCAGCCTCACATAATCGAGTGCACCTAA
Protein Sequence: MEASEWDHATLREEEFEQHAVYLVPDVAASSGDTNRAEASLPRNLVLKPSQALNDVRSSAKESFLETSSVLGVWSTSYIPKGTRFGPLVGQVYTKDSVPADANRKYFWRVYKNNELFYYIDGYDVQKSNWMRYVNPAYSSESQNLIACQYKMNIYFYTIKPILPNQELLVWYCREFAERLNYPLTGELMLQRIRQQVQQSTLPTEIPSTVDLVSPLKDSSIYERRSQMTPTDGSVRSDEGYHSNGYHDEILTPPEESSESDSENNYVLDFSKNAKTSVCNNEVLKQDNAVVKNEYRKVKIKITKTYGNFQASKNLDANGKDKDQELPSRAVTPELKPVSPIILQKNAVLTTVTEDEIPEKKSFYESDVKTALPVSGRPAYLTSPSNSILENILLRSSTDNNNNSHNHHHNGTQQHHQIHHQTHADSVTPPPSSPTEMAYSYKKSHRYGNILPCSPDSSSNLPMQADTCVNSTTNGNSTLPMQSPTSNLHSSTGNLHSSTGNLHSSTGPSNVLQSHPGNIHSSSNSNNHHSSANVLSSSTVLTSTSNLHSSTTSSSCPPKRKTKSPSPSANPTSASTPTILYSSSGGCQIESSPVYPTSAANSNQSVSPISPIQSPSSYPYGIYHQNGSLHHNVAPLSINCTAYSPTPSGNVVYERADGRRLEAATSSHQLPTSSTMQIDSNQTLIAGTHNLHLGHHPGLTIHANSSSLNRYSPASSLSPDDHGCSQSGSLSPNSQGSRGYRSLPYPLKKKDGKMHYECNVCCKTFGQLSNLKVHLRTHSGERPFKCNVCTKSFTQLAHLQKHHLVHTGEKPHQCEICKKRFSSTSNLKTHLRLHSGQKPYACDLCPAKFTQFVHLKLHKRLHTNERPYTCQGCDKKYISASGLRTHWKTTSCRPNNIEDELALAAAVGSPTYYEYGPDMNVGNMPKECELEHIDNYERHGSTHGPHSTSLHNLENSVSRPSVIETSQPHIIECT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00230337;
90% Identity: iTF_00215282;
80% Identity: -