Bson009179.1
Basic Information
- Insect
- Bombus sonorus
- Gene Symbol
- -
- Assembly
- GCA_029958995.1
- Location
- JARWAU010000008.1:15591775-15595667[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00041 0.046 14.8 2.3 3 23 93 114 91 114 0.95 2 15 0.34 38 5.6 2.7 4 23 144 164 144 164 0.94 3 15 0.035 3.9 8.7 0.4 1 19 171 189 171 190 0.91 4 15 1.4 1.5e+02 3.7 0.1 2 12 191 201 191 204 0.83 5 15 0.041 4.5 8.5 6.3 1 23 216 238 216 238 0.98 6 15 0.15 16 6.7 0.3 7 23 248 265 242 265 0.90 7 15 0.00023 0.025 15.6 0.9 2 23 270 291 269 291 0.97 8 15 0.017 1.9 9.7 1.1 2 23 441 463 441 463 0.92 9 15 0.0035 0.38 11.9 2.4 1 23 467 489 467 489 0.98 10 15 0.0004 0.044 14.8 3.3 1 23 495 518 495 518 0.95 11 15 1.4e-05 0.0015 19.4 4.2 1 23 525 548 525 548 0.98 12 15 0.83 92 4.4 8.9 1 23 583 605 583 605 0.97 13 15 0.00019 0.021 15.8 1.5 1 23 609 632 609 632 0.96 14 15 0.0022 0.24 12.5 0.5 3 23 640 660 638 660 0.92 15 15 8.6e-06 0.00095 20.1 3.0 1 23 666 688 666 688 0.98
Sequence Information
- Coding Sequence
- ATGGCGGAAAAATCGAAGCCACCGAACCCGACGCAACAACTCGTTTTATTGTGTCGCAGAATCCCGGACCAAAAATGGAATGGAGGAAGACAAACACGCAAAGGAGATCCTATTAGACTTTTAGGAAAGGACGAAatagaagagaaaaaggaaggacAAGACGAGACAGAATCACAAAAGTTTCCCATCCTAGAAACCAAAGACGAGACAGAGTCACTAAAATTTCCCGACCCAGAAACCGAAGACGAAGGGATGGATGAAATTCTAGAAATCATCTGCCCAGTTTGTCAAAGGGTGTTTAAGAACGTGATCTGTTTACAAAGACATATACATAGGTTTCACAAGATGATTCATTCTTGTGACAAATGTAACAAATGGTATCTATCGAATTGCAAGATAACTCACGAAGACTATCCGTATTTGCAAAGTCCTGTGTGCCATTTAAAATACAAGCGTAAAGCGAGACTAAAGTATCATCATAATCGCGTGCACAGCAACGTGGAGTCGAAGTTCGTGTGCGATCACTGCGTGAAACGTTTTAAATTGAAGATCGATTTGGTTGGTCATCGCGTCTGTAAAATTTGTGGTAAGATCGTCAAGAACATCACGCAGCACGACAAGGCTGCGAAAAGAAACGCTTTCAAGTATAGTTGCGATGTTTGTTGTAAAAAATTCTCGACTCGTAACCACTTTGACAATCATTTGCTTATGCATAAGGATAATTTCAAGTGCACTTCATACGACAAAGTTTTCTCTTCGCCGTATTCTCTTTCTAGTCACAAGATCATGAGACATAGACGTAGCTCGACGTGTACCATTTGCGAGAGATCATTCCCTAGTACGACCAATTTTTATCAACACGTGCTCACTCACCAGATATCACGCCTAATAAATACGATATTTATGGGGAAGATTTCACGCAGAGATCTAGTGTCTCGAGACATCGAAAGACTCATGCTTCGTTTAGAGAAACCACACTATCCTTGTTTCAGAGAAGAACCTGTCCCACGACAGCAAAGAAACCCAGAAAGAAATTCGTCTTACTGTTTAATAGCGGCCGATAAGCCCCCGGGAAAAGGATCGACACAAAGCGCAACATCAAATCTCAAGCACACGGAATCAGAAAATCTGAAAGAATCGCAGCAACGCAATTCACCCACCGATTCGGAATACGACTCTGAAAATTCACGAAATGCCAGAAGAAATTCAAGAAAATCCAAAATAAATGTGCAAACATCCTCGCGGAAGAGAGAAGCCGAATGCATCGCTTCGAAGAAAGACGAAGTCGAGGTGGATCAAGTTTTGGATAAAATCAAAAACACTTGTCCCTTCTGTGAAAAGCATTTCGATAACGCGAAGAAAGTGGAGAACCACGTAACGTATGTACACAGGAAACCGTATCAATGCGATATGTGTAAAAGGGCGTGTCACACAGCTCGTGCCTTAGAAGAACACAAGATGATCCATCGACCGGATTACTTCTTCGAATGTAAGATTTGCCACGTGAAATATAAAAGCGAAGACAGCTTAAAGAGGCATAATATGCGTACGCACAGCGATTACGAGTCGAAATACGTGTGTGAACATTGTGGTCGCAGCTACAAGCTGAAGATAGATCTGACGCACCACATGAAGAGATCACACGCTTCGGAATTGCAGATCTGTCGATTCTGCGGCAAGGAAGTGAAAAACGTGAAAGGCCACGAATGGAGGCATCAGAAACGTACGAAGGAAGTGAAATACGAGCATACTTGCCACTTGTGTCGCAAGAAGTTTCTTCACAGGAGTAGATTGGATAATCATTTGAGGCTCCACGAGAAAGGCTTCAAATGCGAAGAGTGTGGGAAAGAGTATCGTGGAACTCGTGAATTAATGAGTCACAGAAGATTTAAACATGGCCAGGCGAAGATTTTGACCTGTATCTTGTGTCAGAAAGAGTTTCCTTCGAGCAGCAATTTTTATCAACACGTTTTGACGCATGCTGGAATTAGGCCTTATAAATGTGACGTTTGTGAAGAGGATTTCACGCAACGTTCTAGCCTATTGAGACACAGGAGGCATCATCCTGGACCGCTTCCGCCATTACATTCGACTCATCCGCAGATTGCTGAATTGGCTAGGAGTTATCTGCAGAAACTGCAGAATAATCAGATCGATAAAAGTTGCGTTTTGGACGCGAGATTATGA
- Protein Sequence
- MAEKSKPPNPTQQLVLLCRRIPDQKWNGGRQTRKGDPIRLLGKDEIEEKKEGQDETESQKFPILETKDETESLKFPDPETEDEGMDEILEIICPVCQRVFKNVICLQRHIHRFHKMIHSCDKCNKWYLSNCKITHEDYPYLQSPVCHLKYKRKARLKYHHNRVHSNVESKFVCDHCVKRFKLKIDLVGHRVCKICGKIVKNITQHDKAAKRNAFKYSCDVCCKKFSTRNHFDNHLLMHKDNFKCTSYDKVFSSPYSLSSHKIMRHRRSSTCTICERSFPSTTNFYQHVLTHQISRLINTIFMGKISRRDLVSRDIERLMLRLEKPHYPCFREEPVPRQQRNPERNSSYCLIAADKPPGKGSTQSATSNLKHTESENLKESQQRNSPTDSEYDSENSRNARRNSRKSKINVQTSSRKREAECIASKKDEVEVDQVLDKIKNTCPFCEKHFDNAKKVENHVTYVHRKPYQCDMCKRACHTARALEEHKMIHRPDYFFECKICHVKYKSEDSLKRHNMRTHSDYESKYVCEHCGRSYKLKIDLTHHMKRSHASELQICRFCGKEVKNVKGHEWRHQKRTKEVKYEHTCHLCRKKFLHRSRLDNHLRLHEKGFKCEECGKEYRGTRELMSHRRFKHGQAKILTCILCQKEFPSSSNFYQHVLTHAGIRPYKCDVCEEDFTQRSSLLRHRRHHPGPLPPLHSTHPQIAELARSYLQKLQNNQIDKSCVLDARL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -