Basic Information

Insect: Bombus skorikovi
Gene Symbol: salm
Assembly: GCA_014737355.1
Location: JACXIH010000055.1:319467-328174[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 3.8e-06 0.00035 21.0 0.9 1 23 380 402 380 402 0.98

2 7 7.5e-06 0.0007 20.0 2.1 1 23 408 430 408 430 0.98

3 7 0.048 4.4 8.1 3.8 2 23 812 833 811 833 0.98

4 7 3.3e-08 3e-06 27.5 0.6 1 23 839 861 839 861 0.97

5 7 4.6e-05 0.0042 17.6 2.6 1 23 871 893 871 893 0.98

6 7 0.0016 0.15 12.7 1.9 2 23 1214 1235 1213 1235 0.97

7 7 0.027 2.5 8.8 1.0 1 14 1241 1254 1241 1255 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	3.8e-06	0.00035	21.0	0.9	1	23	380	402	380	402	0.98
2	7	7.5e-06	0.0007	20.0	2.1	1	23	408	430	408	430	0.98
3	7	0.048	4.4	8.1	3.8	2	23	812	833	811	833	0.98
4	7	3.3e-08	3e-06	27.5	0.6	1	23	839	861	839	861	0.97
5	7	4.6e-05	0.0042	17.6	2.6	1	23	871	893	871	893	0.98
6	7	0.0016	0.15	12.7	1.9	2	23	1214	1235	1213	1235	0.97
7	7	0.027	2.5	8.8	1.0	1	14	1241	1254	1241	1255	0.92

Sequence Information

Coding Sequence: ATGCAGCTCATGAGATGGAGCATCATCACGCGCCGCCTCGAATGCCGCGGCATCAAGCAGGGCATCTGCGGACCCTCCAGACACTCGTGCGCACGATTTTCCGGTGAAGAAAATGAGTTTACGTCGGATGGCGAGGAGAGTGGCGGTGGAGGAGTCGGCGGAGACGAAGCGGTGGACCTCACGGCATCCAGGTGCCATCAGGGCGAGGAGGACGACAAGGATCAGGAAGACGCTTTGGAGGAGGATGAAGAGGAAGGCGTGGACGAGCAGGACGAGCAAGAGGACGACGAGGAAGGATCGCGCAAGCAGATGCATCACAGGCAGGATGCGGAGAACAACAACAATTTCGTAGAGGGTGGCGCCGCTGGCAGCCTGTTCCCGCCAGCTGGAACTAGTCACGTCACCCTGGAAGCACTGCAGAACACGAAAGTGGCGGTGGCTCAGTTCGCGGCGACGGCGTTGGCCGGAGGCGCGGACAGCGAGGCCGCTCTGCAGGACTTGGCGTTGCTTCAAAGCACCCTGTACACCTTGCAACATCAGCAAGTGTTTCAACTGCAGCTGATCAGCCAACTTCAGCAGCAACTGTCCATCACGCACAATCAGTCGGTGCAACAACAAGGCCCGGGTGAGCCGTCGGATAGCAAGGAGATATCTCCGTCGCCGATCATCCAGCCTAAACCTTTGTCGAGCCTAACGTCGCCTCCGTCGTCGCGTCCACCGAGTCATCGGCAAACCTCGCCGGCTCCCGTGACGCCGAACCTGGCTCAGGAAAGACCCACGCCGACCAGCAGCGCGTCCCCGTTGAATATTCCGTTGGCCTCGTCGAACGCGACCGGCACGACCTCGACTACCAGTACCGGTAGCCAGATGCCGATGTCTCATCAGATACCGCCTCTCTGTTCGATCAGTTCTTCCCTAGCTTCGTCCATCATAACCAACACCGATCCGCCACCGTTGCACGAGCCGAACACTCTGGAGATGCTGCAGAAGAGAGCGCAGGAGGTGCTGGACAACGCGAGCCAGGGACTTCTGGCGAATAACCTGGCCGACGAGCTGGCGTTCAGGGGTGGAAAAGGCTCCCGTCTCTCGCCGTACGATTCAAAGTCCGGTAGCGGTCGCGGCGAGCCATTCTTCAAGCACCGATGCCGTTATTGCGGCAAGGTGTTCGGCAGCGACTCGGCGCTTCAGATCCACATACGATCGCACACAGGTGAGCGACCCTTTAAATGCAACGTCTGCGGCAGCCGCTTCACCACGAAAGGGAACCTGAAGGTCCACTTCCAGAGGCATACGGCCAAGTTTCCACATGTTAAGATGAACCCGAATCCCGTTCCGGAACACCTGGACAAGTACCACCCACCCTTGCTACAACAAATCGCCTCCGGTCAGAGACCGATGCCGTCACCGCCGCCGCCACCACCTTCTCACCATCCCTCTTTTCACCCGGCGGCAGCGCACGGTTTCTTACCTCCTCAGCCGCCCTTGCCGCTCGGTTTAGCCCTTCCCGGTATGCCACCCTTGTACAGATCGCCGGTTGTCGCTCATCGGGACGATCAGGACGTGCCGGAGAACCTGAGCAAGCCCGTTACCACTGCCCCGACCACCTCGCCACATTCCCCCGCGGTTGTGTCCAATTCTCGTCATTCCTTTCACGACAATCACCATCACCACCATCACCACCACAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACGAGATGAAGCTGGAGCAGCGATCGCCTATGCAGGAACAATACCAGCGACAGCAACGATCTATGAGCCAGGAACCGACCGAGAGGATAACGCCGAAGAAAGAGCCGGAGGAGGCCGAGGAGCCCACGGAGGAGGAGAGCGAGGATTTCGAGGAGACGACCAGACGGTATTTAAATTCACCCCAATCCTCCGTCAATCCACCCTCTCAACCGCAGACTTACGAAGACTGTAGCATGGACAGTAAGATGAGCGGTCGACTGGAGGGAGACGGCGACATGGAAGTCGACGAGGAGATCGAGGAGCAGCCGGAGAATTTGTCCGGTCGTGGAACCATCAATCGTTTGCCGCAACACGTTGTCGCGTACCCCGGCGCCTCCCCTGCGAGTAGTAGCGCGAGCAGTGGAAGCCTTCAAACATCGTTCGCGGGAATTCTGTTCCCAGGGCCACCGGCGCATCATCAAATACCCCATCACGCCGCACCAGCAGCCGTAAACGCGTCAGCCGCCGTCTCTACCAACGAGATGATCGATCCGGCCAAGGATCCGGCTATCTATTCCAGTTTATTGCCACGGCCGGGCAGCAACGACAACTCCTGGGAAAGTTTGATCGAGATAACCAAGACCTCGGAAACGTCCAAGTTGCAGCAGTTGGTCGACAACATCGAGCACAAGCTGACCGATCCTAACCAGTGCGTTATCTGCCACCGTGTGCTCTCCTGCAAGAGCGCACTGCAGATGCATTACAGGACTCACACGGGCGAGCGTCCGTTCAAGTGCAAGATTTGCGGCCGGGCGTTTACCACCAAGGGTAACTTAAAGACTCACATGGGCGTCCACAGGGCGAAACCGCCGCTCAGAATGTTGCATCAGTGCCCGGTTTGTCACAAGAAATTTACCAACGCGTTGGTGCTTCAGCAGCACATACGATTGCACACCGGCGAGCCAACGGAGCTCAGTCCGGAGCAAATTCAAGCCGGTGAGGTGAACGAGTTCCCGCCGGGTTATCCGCACCATCCGTTGGCGTCGTTCCTTCCTCAAGGCTTTCCACCGATTCACCCCGCGGGACCTGGATTCCCGTTAAGCTTTCCTCCAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGGACGACCAGGAGGACGAGGAGGACGATCGCAGAGAGGAGGACGAGAGATGCAATCGCGACACGAGTCGCGGCGACCTAGAGGACGAGCAGGATCACGAAAGCGAAGAAAACGACCACAAGGACGTGTCTTTGCCCAGTTTCTCGACCTCGCTGGCCGCTCTCGAGAATCAGGTGCGAACGATCACGACGACAGCCGCGTCGACGATAGGAAACGCCGCCAGGTCGCCGCCGTTTCACCGTTACAACGGCAGCGAGAAGAGCAACAGTCCGCCGAATCCTGGCGCGCCGTTAGATTTGACGCCTCGGGCATCGTCCACTCCGGCCTCGGTGGCGTCAGAGCCAACGCCACCTCCGCAAACCACCACCCACCATCCGCATCCGTTCGGCATGTTCGCAGGCCTGCTGCAAGCGGTCTCATCGTCGCCGTCTACCAGCAGCATCGGTTCGTCGAGCATAAACAGCATCAGCTCGATAAACGCCGTGACTCCTGGAAGCGGCGCCGCCGGGCCCTTGGCTTCCCTGACCACGTCAGCCGTGTTGGCTGCTACGTCCACCTACAACCCGCTCGGCCTGGCTGTCGGAGGGCCAGCAGTGCGTGGAAACACCACGTGTAATATCTGCTACAAGACATTTGCGTGCAACTCCGCGCTGGAGATCCATTACCGGAGCCACACGAAGGAACGGCCTTTCAAATGCAGCATATGCGACAGAGGCTTTTCCACAAAGAACGATGGTTCCGGGCAGCAAGCATGCATCTGTGCGTCTCAACCGTTGCCCGCTAACAGTTCGATCACTTCACCCGATCCTCAATTTGGATCAGCGTGCGCCAGTAGTCGAGAAAAAGCGAAACGCAGGCGGCGGCGGCGACCTGAGGATCGGAAGAACCGGGGGCGGAAAGGAGCCGGAGGGGGGCGGGGGCTGACGCCTGTCTATCCTGCCATCCGCCTACCCCCGCTGATGTCGCCCGCCCTCGGACTTCTACCCTCGGCGCACGGCCTCCTGGGGAACATGAAGCAGCACATGCTGACTCACAAGATCCGCGACATGCCGCCGCATTTGTTCAGCGACTCGAAGCAGCAACACCAACAGCAATCTCAGGAGCACGAAACCTCGAGAAGTCCGATGTGCGCGGAGGATTCGAGCTTACCGCCGCCGCCGCCGCCACCGCCCCCACCGCCTCCTCCACCGATGCCTCCGACTTCGATGGAACAAAGCATCGCCGTGAAGAGATCGCCGCCAGAGGGGGAGCTGCCAGCACCAAAGAGACCAGCCAGTAAGTAA
Protein Sequence: MQLMRWSIITRRLECRGIKQGICGPSRHSCARFSGEENEFTSDGEESGGGGVGGDEAVDLTASRCHQGEEDDKDQEDALEEDEEEGVDEQDEQEDDEEGSRKQMHHRQDAENNNNFVEGGAAGSLFPPAGTSHVTLEALQNTKVAVAQFAATALAGGADSEAALQDLALLQSTLYTLQHQQVFQLQLISQLQQQLSITHNQSVQQQGPGEPSDSKEISPSPIIQPKPLSSLTSPPSSRPPSHRQTSPAPVTPNLAQERPTPTSSASPLNIPLASSNATGTTSTTSTGSQMPMSHQIPPLCSISSSLASSIITNTDPPPLHEPNTLEMLQKRAQEVLDNASQGLLANNLADELAFRGGKGSRLSPYDSKSGSGRGEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHTAKFPHVKMNPNPVPEHLDKYHPPLLQQIASGQRPMPSPPPPPPSHHPSFHPAAAHGFLPPQPPLPLGLALPGMPPLYRSPVVAHRDDQDVPENLSKPVTTAPTTSPHSPAVVSNSRHSFHDNHHHHHHHHNXXXXXXXXXXXXXXXXXXXXDEMKLEQRSPMQEQYQRQQRSMSQEPTERITPKKEPEEAEEPTEEESEDFEETTRRYLNSPQSSVNPPSQPQTYEDCSMDSKMSGRLEGDGDMEVDEEIEEQPENLSGRGTINRLPQHVVAYPGASPASSSASSGSLQTSFAGILFPGPPAHHQIPHHAAPAAVNASAAVSTNEMIDPAKDPAIYSSLLPRPGSNDNSWESLIEITKTSETSKLQQLVDNIEHKLTDPNQCVICHRVLSCKSALQMHYRTHTGERPFKCKICGRAFTTKGNLKTHMGVHRAKPPLRMLHQCPVCHKKFTNALVLQQHIRLHTGEPTELSPEQIQAGEVNEFPPGYPHHPLASFLPQGFPPIHPAGPGFPLSFPPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADDQEDEEDDRREEDERCNRDTSRGDLEDEQDHESEENDHKDVSLPSFSTSLAALENQVRTITTTAASTIGNAARSPPFHRYNGSEKSNSPPNPGAPLDLTPRASSTPASVASEPTPPPQTTTHHPHPFGMFAGLLQAVSSSPSTSSIGSSSINSISSINAVTPGSGAAGPLASLTTSAVLAATSTYNPLGLAVGGPAVRGNTTCNICYKTFACNSALEIHYRSHTKERPFKCSICDRGFSTKNDGSGQQACICASQPLPANSSITSPDPQFGSACASSREKAKRRRRRRPEDRKNRGRKGAGGGRGLTPVYPAIRLPPLMSPALGLLPSAHGLLGNMKQHMLTHKIRDMPPHLFSDSKQQHQQQSQEHETSRSPMCAEDSSLPPPPPPPPPPPPPPMPPTSMEQSIAVKRSPPEGELPAPKRPASK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00118182;
90% Identity: iTF_00232761;
80% Identity: -