Basic Information

Insect: Bombus skorikovi
Gene Symbol: -
Assembly: GCA_014737355.1
Location: JACXIH010000026.1:2121376-2124262[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 3.3 3.1e+02 2.3 0.1 2 23 35 56 34 56 0.80

2 9 0.37 34 5.3 1.4 2 23 319 341 319 341 0.85

3 9 1.9e-06 0.00017 22.0 1.1 1 23 359 382 359 382 0.98

4 9 2.4e-05 0.0022 18.5 3.7 1 23 405 427 405 427 0.98

5 9 4.5e-06 0.00041 20.8 2.2 2 23 433 454 432 454 0.96

6 9 0.00023 0.022 15.4 7.0 1 23 460 482 460 482 0.98

7 9 1.2e-05 0.0011 19.4 2.8 1 23 488 510 488 510 0.98

8 9 1.2e-05 0.0011 19.4 2.4 1 23 516 538 516 538 0.97

9 9 0.0032 0.29 11.8 4.9 1 20 544 563 544 564 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	3.3	3.1e+02	2.3	0.1	2	23	35	56	34	56	0.80
2	9	0.37	34	5.3	1.4	2	23	319	341	319	341	0.85
3	9	1.9e-06	0.00017	22.0	1.1	1	23	359	382	359	382	0.98
4	9	2.4e-05	0.0022	18.5	3.7	1	23	405	427	405	427	0.98
5	9	4.5e-06	0.00041	20.8	2.2	2	23	433	454	432	454	0.96
6	9	0.00023	0.022	15.4	7.0	1	23	460	482	460	482	0.98
7	9	1.2e-05	0.0011	19.4	2.8	1	23	488	510	488	510	0.98
8	9	1.2e-05	0.0011	19.4	2.4	1	23	516	538	516	538	0.97
9	9	0.0032	0.29	11.8	4.9	1	20	544	563	544	564	0.94

Sequence Information

Coding Sequence: ATGTGTGCAAGACTTTTAGCATGTCCTTTGTGCTCACAGCCAGGTTTTTTAACATTGGATGCATTGCGAGCAGGATTAATAAGTGTAGCAACACGACCTCTTACATGCCCTGTGTGTAATGAAGTATTGCTTGGTATTGATAAGCTTACTATTCATTTATTCAGCCACACTATTAATTTAAGTAATAATAATACAACAGAGTCATTGAAACATACAAATATTATTACCAGTACTCATAATCCACCAATAATAAATAATTTAGAAAGTATTACTTTTCAAGATTGGAATATGTCTAAAATACAAATTACAGATTCAAATAAACTTTCACAGAATAACTTAAATATTCAAAATAGTTTAATATCTTCACAAAGTCTGCAAAATACAAAAGATGAAGCTTCAATTTTGAATCCAGAAGTTTCTATTCAAAATCAAAATTCATTGAATCATATATCTCAAATTGCATTTCCACAAAATTCAATTTGTGGAAATAAAGAGATACATATACTTCAAAGGAATAAAGAAATAGAAACAGAAAAACTGCCTCAACAAATGTTACAAGAAACAATAAAAGTAGATTATGCTACACAATACTTTAATCATCAAAACGTTAAAAATGTAAAATTTGTACAAAATTATCCTGAAACAGAATATGAAAATGTCCAAACATTTAAAAATTGGGTAGAGGATCAACATTGTGAACAACCAAACAAAGAAGTAGCAGACAAAATGGAAAGATCTGTAGATAAACCTTGTAGTAATGAACAAATAATAATAACAAATAAATTTCCAAACATTATAAGTACCAATATACCATTGGAAAAAGCTAATGAAAAGAATATACAAGAAGATTCATCTGTTGTATGTAATAAAAGACAAAATGAAAGTCTTGAACATAATGAGATATTACCTCAATTAAAACTTATAAAAACATTATCAACAAAACAAAAGACTGAACGTTGCAATATATGTGGTTTTCATTTTCCTGATCATAATATTTTGCTTTTACATAAGCAATTAATACATATGATCAATGAAAAAGATTTAAATGTTATGCCTGAAAATTTACTTAAGAATTATTCATGTCATTTATGCTCTAAAGTATTTAAAATGAGAGGTAGTTTAATGGTGCATATGCGAGTAGCACATTCGGGATATAATTTAGGTTCTTTGGTCAGAGGTGGACAAATAGAACTCATACTTAATGAAAATAAATTTAGCTGCCCCACATGTGGAAAAAAATTTAAAAAGGAACAACATGTAATGCAGCATTTAAAAACACATGAAGCTAAACAATGGGAATGTGATGTATGCAATAAAATGTTTACAACGAAATATTTTCTAAAGAAACATAAAAGATTACATTCAGGAGAAATGCCTTATAAGTGCAACATATGTAATAAAACGTTTACTTTCCAGCAGTCATATCATAAACATAGATTATATCATAAAGATGATAAACCTTATACATGTACAACTTGTGGCAGATCATTTAAAGAATTATCTACTTTGCATAATCATGAACGAATTCATACAGGAGAAAAGCCTTTTGCATGTGAAACTTGTGGAAAATGTTTTCGTCAACGTGTTTCATACTTGGTTCATCGTAGAATTCACACAGGTGTAATGCCTTATAAATGCACAACATGTGGAAAAAGCTTCAGATACAAGGTAAGTCAAAGAACTCATAAGTGCCCAGTACAACAAACAGGAAATGTACAACAAACAAATATCATGGACCAGAAGTCAGTAAATTTACCAGATATACAAGGTATACACAATGATATATGTAAAACTCAAAAGGATTTTTTAAAGGAAAATCAAACGATGCTAGATATTATAAATAATGAAGAAAACAAATATGTGTTAATAATAAATACTCAAGGTCAGCATCTTTTAACAAAAGAGTCTAACATTGAAAAAATACAAACTATTGCAAATACTAACACTACAAATAAAAAACAGAAGTTAGAAGAATGTACAGAGACAAACAATGATAATGAAAAAACAGAGAATATGTGGAAATCTGACATTCCTAATAGTTCTATATTTAAGAAACCTTTTGACACTTGTAAAGTAATACAATCAAAAAATGAGAAACCATTTCAAGAAGATACACATGATTTCTTTTCAATGGTAATGTCTCCCCTTGAAAATGGACTATCTTCACCCACTGCTGAAATGGAACACTTAAGAGTATCATCTCCCACACAAAAAGGAGATATATCAAAATCTTATGATACTTTTAGAAATACAGCACATGTCATGGAAATGAATATGTTTAATACTGATATAGAACAAAGTTTTAGCAGTGCAAATAACAACGCAAATAATTTGCAAACTATTAACGAAGAATCATTGAAACAACTACTGTATAGTATTAATGAGAAATGA
Protein Sequence: MCARLLACPLCSQPGFLTLDALRAGLISVATRPLTCPVCNEVLLGIDKLTIHLFSHTINLSNNNTTESLKHTNIITSTHNPPIINNLESITFQDWNMSKIQITDSNKLSQNNLNIQNSLISSQSLQNTKDEASILNPEVSIQNQNSLNHISQIAFPQNSICGNKEIHILQRNKEIETEKLPQQMLQETIKVDYATQYFNHQNVKNVKFVQNYPETEYENVQTFKNWVEDQHCEQPNKEVADKMERSVDKPCSNEQIIITNKFPNIISTNIPLEKANEKNIQEDSSVVCNKRQNESLEHNEILPQLKLIKTLSTKQKTERCNICGFHFPDHNILLLHKQLIHMINEKDLNVMPENLLKNYSCHLCSKVFKMRGSLMVHMRVAHSGYNLGSLVRGGQIELILNENKFSCPTCGKKFKKEQHVMQHLKTHEAKQWECDVCNKMFTTKYFLKKHKRLHSGEMPYKCNICNKTFTFQQSYHKHRLYHKDDKPYTCTTCGRSFKELSTLHNHERIHTGEKPFACETCGKCFRQRVSYLVHRRIHTGVMPYKCTTCGKSFRYKVSQRTHKCPVQQTGNVQQTNIMDQKSVNLPDIQGIHNDICKTQKDFLKENQTMLDIINNEENKYVLIINTQGQHLLTKESNIEKIQTIANTNTTNKKQKLEECTETNNDNEKTENMWKSDIPNSSIFKKPFDTCKVIQSKNEKPFQEDTHDFFSMVMSPLENGLSSPTAEMEHLRVSSPTQKGDISKSYDTFRNTAHVMEMNMFNTDIEQSFSSANNNANNLQTINEESLKQLLYSINEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00222724;
90% Identity: iTF_00216644;
80% Identity: -