Basic Information

Insect: Bombus skorikovi
Gene Symbol: ECU06_1150
Assembly: GCA_014737355.1
Location: JACXIH010000007.1:2112426-2113451[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 1.6e-05 0.0015 19.0 4.0 1 21 19 39 19 40 0.95

2 9 0.0052 0.48 11.1 0.3 1 23 87 110 87 110 0.92

3 9 7.6e-05 0.007 16.9 1.7 1 23 142 164 142 164 0.98

4 9 1.2e-05 0.0011 19.4 1.6 1 23 170 193 170 193 0.96

5 9 5e-06 0.00047 20.6 0.3 1 23 199 221 199 221 0.98

6 9 3.6e-08 3.3e-06 27.4 1.0 1 23 227 249 227 249 0.98

7 9 5.8e-06 0.00053 20.4 1.8 1 23 255 277 255 277 0.99

8 9 7.9e-06 0.00073 20.0 1.9 1 23 283 305 283 305 0.96

9 9 1.8e-05 0.0016 18.9 1.4 2 23 312 334 311 334 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	1.6e-05	0.0015	19.0	4.0	1	21	19	39	19	40	0.95
2	9	0.0052	0.48	11.1	0.3	1	23	87	110	87	110	0.92
3	9	7.6e-05	0.007	16.9	1.7	1	23	142	164	142	164	0.98
4	9	1.2e-05	0.0011	19.4	1.6	1	23	170	193	170	193	0.96
5	9	5e-06	0.00047	20.6	0.3	1	23	199	221	199	221	0.98
6	9	3.6e-08	3.3e-06	27.4	1.0	1	23	227	249	227	249	0.98
7	9	5.8e-06	0.00053	20.4	1.8	1	23	255	277	255	277	0.99
8	9	7.9e-06	0.00073	20.0	1.9	1	23	283	305	283	305	0.96
9	9	1.8e-05	0.0016	18.9	1.4	2	23	312	334	311	334	0.96

Sequence Information

Coding Sequence: ATGGCGGAAATGGTGAAAGTAATGCTACCTTCTTTGAGAGAAATAAAAGATCAATATACGTGCAAACATTGTCGACGAATTTTTGAAAGAAAATACCACTTATCCCGGCATATACTCCGATGTAAAACTGGCAGTTTCACTGAACGCACTATATCAAATGTGAAAGATGTAGATGAAACAGAAGATAAAGATATGAAAAACGAGAATCAAAAAGATCTAAGATTGTTTCAAAAATACAAAAAAAATAAAATTGAAACGTATCCATGCATATATTGCGATTATACAGTCAAACAAAAAAAATTGCTCGAACTACATTTGTTGGAATCGCATTCAGAGTTTACCAGAAAGAAGGACAAAAAATTAAAATGTGCCGATCGAGAAATGGTTATGCGCGCCAAAATGGAAATCGACGGGAAAGTTTATTATCATTGTAACGAATGTGGTAAAAATCTTTATTCGCCGTATACGTTTTTCTGGCATGTGCGTATACATACTGGAGAACGACCATATACTTGTCATCTTTGTGGCAAACAGTTTCGTATAAATCAAGGACTAGCAAGACATTTACGAGATACGCATGCAGGCATAAAAAATTTTCCATGTGACATATGCGGTCGAATGTTTTCGACAAAACGTAGCGCGGAAGATCATAAACGTATACATACTGGTGAACGACCATATATTTGTAATATTTGTGGAAAATCATTCAAGCAAAAAGCTTCTCTATTTGTACATAATCGCACTCATTCAGATGTGTTTCCTTTTAAATGTAATTATTGCGATCAGAACTTTCGAACGAGACCATTACTCATGTTGCATGTAAAGAAACATACAGGTGAAAAGCCACACGCATGTGACATATGCGATCGACGGTTCCGTATAAAATACGAGCTAAAGCGTCATCGTTTAATTCACTTTGATGACAAACCGTGGCAATGCACAGAATGCAATCTCTCGTTTCGACAGAAACGCTATTTAGTTAATCATAAGAAAGTTAATCATAAGTTCGCGGTTCCTATGAAATAA
Protein Sequence: MAEMVKVMLPSLREIKDQYTCKHCRRIFERKYHLSRHILRCKTGSFTERTISNVKDVDETEDKDMKNENQKDLRLFQKYKKNKIETYPCIYCDYTVKQKKLLELHLLESHSEFTRKKDKKLKCADREMVMRAKMEIDGKVYYHCNECGKNLYSPYTFFWHVRIHTGERPYTCHLCGKQFRINQGLARHLRDTHAGIKNFPCDICGRMFSTKRSAEDHKRIHTGERPYICNICGKSFKQKASLFVHNRTHSDVFPFKCNYCDQNFRTRPLLMLHVKKHTGEKPHACDICDRRFRIKYELKRHRLIHFDDKPWQCTECNLSFRQKRYLVNHKKVNHKFAVPMK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00216560;
90% Identity: iTF_00224718;
80% Identity: -