Bsko017779.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Bombus skorikovi
Gene Symbol
lov
Assembly
GCA_014737355.1
Location
JACXIH010000005.1:581819-586810[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1.9e-18 4.2e-15 55.3 0.0 1 44 547 590 547 591 0.96

Sequence Information

Coding Sequence
ATGTCGAGCGCCGCGGACAGTCCTGATGGGATGGCTTTGCAGTCGCACTATTCCTTACGATGGAACAATCATCAGACGCACATACTTCAAGCCTTCGAGGCGTTGCTACACGCGGAGATACTTGTCGACGTGACCCTGGTCTGCGCCGAGACCAGCCTCAGGGCGCATAAGGTTGTGCTTAGTGCCTGCAGCCCATTCTTCGAAAGGATATTTGCCGAGCACCCCTGCAAACATCCGGTGATCGTACTAAAGGATTTTCCCGGTCACGAAGTAGCGGCGCTGATCGACTTTATGTACCGTGGCGAGGTGAGGGTCGGTCGCGAGGAACTCGCAGGACTGATGAGAGCCGCGGAGAGTCTACAGGTGCGTGGATTAGCTTCGTCGGAACCGAGGCCGACGTCGCCGCCGGAAACGCCGACCGCCGATCTGCTGCTTGGCGAGCCGTCGACACCCGAGGGCGCGAGACAGGAAACTCCAGAGGAGGATGACAACGTTTCGGAAAGCACGGCGCCGCCGTCCACGCGTGAACCGCTACCGGCAGCGGCAACCGCCATTTTTCATCCTAGCAGGGACCATCGCGATAGGTTACCGCACATGGGCCATCTGAACTTTGGGGTACGCGAGCCGCGAGAGAATTGCGGATCGCCGCTGTTACCTCGACGAAAGCAGGCCCGGCCGCGTAGAAGATCCGGCGAATTGGTGCCGCAGGATCTCAGTCGACCTCATCCACCGCGGAGTCTTAGTCCGTTGGCGAGCGGATTGAATCTGGCCGGTGTTAATCAACAATCGCAACACCAACAACACCAACAGCCCTCGAACTCGAGCGCGCAGAACCACCTACAGCAGGAGGATATAGCGGAGAATCTTTCGATGAAGAGATCGTCGTCGCCCAACGGAGCCGACCATCACAACGTAAAAGCGGAGAGCAGCGAAGCGGCCAGTAGTCCGAGGGGATCTCCGTTAACCGGCACGAGTCTGCTGCATCCGGACGGTTCCCTTCAAGATATTCCGTCTGCTGCGGCAGCAGCGGCGGCGGCCGCCGCCGCCGCGGGCTTGCCGACGATGTCGGCCTTGTCACTGACACCGCCGCATCATCACAGTGAGTACCTGACGAGTCTGGGCCAGTTAGCGGCCCAGTGGTTACCGAATCATCCACAGAGCCAGTTGCCGCCTCCACCTCAGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCCGTTAGACGGTGTCGCGTCTCTAGGTGGTGGACTGTTTCCTCACGCGGGTGCTCTCGACAGAGGATCCCTTTTGGCGGATCTTCACGATAGCTTTAAACCGGAAACGTTGCACGGACTTTTCGGCGCGGCGGGTCTGAGCGGCCATCATTCGGGAAAAAAGCCAAAGAAACACAGGGGCGACGGTGACGCGGCGCGCAGATGGGCAGACCACAGCGGTCGAGGACTACCGGTAGGAAGGCCGAAAGGTCAGCACAGCGCACCGAGAGGCGGACCGCCACGGTCTTGGACGAACGCCGAGCTGACCGAGGCGTTGCAGCACGTTTGGAACAAGAAGATGACCACGTCGCAAGCGAGCAGAATCTTCGGTATACCGTACAATAGTCTATTGATGTACGTGCGAGGCAAATACGGGAAAAGTTTGAAACTCGAGCAACTGAGAAGGGACTGCACGGGCTCGACAACGAGCGAAGTAGTGATAAATTCGTTGAACAACAACGTTAAGGCCGTCCAGCCGCCGACGCAGATGGCTCATCCGCTCGCCGGTCTACCGCCGCACCCGGGCGACGACGGTGTATTTCCTCATCATTCGTTGCTCGGCGCTAATCTACCACAGGGTTTCTTTCCTGACTTTGCCGCCGCCGCGTTCCCCGTGCCGGTTAGTATGGTCCATTTACTTCCGCCAAGCGAACAAAAGGCCTTCGATCCGGCGGCGAATCCCGCTGGCACGAGTGGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGCACAGGTGGCGATCTTAATACTTCGCGGAGCAGTCGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCAACCGCCACAGTCGGCACCCACGCTACTTCAACAAAATGGTTCGGATTAG
Protein Sequence
MSSAADSPDGMALQSHYSLRWNNHQTHILQAFEALLHAEILVDVTLVCAETSLRAHKVVLSACSPFFERIFAEHPCKHPVIVLKDFPGHEVAALIDFMYRGEVRVGREELAGLMRAAESLQVRGLASSEPRPTSPPETPTADLLLGEPSTPEGARQETPEEDDNVSESTAPPSTREPLPAAATAIFHPSRDHRDRLPHMGHLNFGVREPRENCGSPLLPRRKQARPRRRSGELVPQDLSRPHPPRSLSPLASGLNLAGVNQQSQHQQHQQPSNSSAQNHLQQEDIAENLSMKRSSSPNGADHHNVKAESSEAASSPRGSPLTGTSLLHPDGSLQDIPSAAAAAAAAAAAAGLPTMSALSLTPPHHHSEYLTSLGQLAAQWLPNHPQSQLPPPPQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLDGVASLGGGLFPHAGALDRGSLLADLHDSFKPETLHGLFGAAGLSGHHSGKKPKKHRGDGDAARRWADHSGRGLPVGRPKGQHSAPRGGPPRSWTNAELTEALQHVWNKKMTTSQASRIFGIPYNSLLMYVRGKYGKSLKLEQLRRDCTGSTTSEVVINSLNNNVKAVQPPTQMAHPLAGLPPHPGDDGVFPHHSLLGANLPQGFFPDFAAAAFPVPVSMVHLLPPSEQKAFDPAANPAGTSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTGGDLNTSRSSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXQPPQSAPTLLQQNGSD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00221362;
90% Identity
iTF_00220498;
80% Identity
iTF_00228071;