Bsib019112.1
Basic Information
- Insect
- Bombus sibiricus
- Gene Symbol
- Prdm15
- Assembly
- GCA_014737505.1
- Location
- JACXIM010000191.1:975944-978625[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.4e-05 0.0015 19.2 3.9 1 23 253 275 253 275 0.98 2 12 0.0022 0.25 12.3 4.5 1 23 280 302 280 302 0.96 3 12 0.00072 0.081 13.8 1.4 3 23 313 333 312 333 0.98 4 12 4.9e-06 0.00055 20.6 2.1 1 23 425 447 425 447 0.98 5 12 0.0016 0.18 12.7 1.9 1 23 452 476 452 476 0.90 6 12 1.1e-06 0.00012 22.6 1.2 1 23 514 537 514 537 0.96 7 12 1.1e-06 0.00012 22.6 0.8 1 23 570 592 570 592 0.99 8 12 0.00015 0.017 16.0 4.0 1 23 606 628 606 628 0.96 9 12 0.00014 0.016 16.0 4.7 1 23 634 656 634 656 0.98 10 12 0.0012 0.14 13.1 3.2 1 23 662 684 662 684 0.98 11 12 8.6e-05 0.0097 16.7 6.6 1 23 690 712 690 712 0.97 12 12 0.0002 0.022 15.6 0.3 1 21 718 738 718 739 0.93
Sequence Information
- Coding Sequence
- ATGGAAATCGAAAATAAAACAACAATTTCATCAAATGATTGTGGCAATGTTTGCCGTGTTTGTCTTGCAACAAATCAAAATAATCAATGCATTTTCGATAGTAGACGAAGTGATTCGATTAATGAAAGTACAATTGATTTGTCTGAAAAACTTCGTTTGTGCAGTGGTGTGGAGGTACTGGAAAATGATGGTTTACCTTCCACTATTTGCACGAAATGTATATTAAAGATCAATGATGCCCATGAATTAAGAAGGCAATGCCAGCAATCCGATATCCAATTAAGAGAATTGTATGGTAAAGTGGAAAAAATATATAATATCAATTTATGTAAAACTACAAAAGATAAATATTCCCAGACTGATTATTCATTTACTTCTGATTTAATCAAAATTGAAGCTGATTCATTTTCTGCAATGGGTTATAATTCTTATCCGATGGTAATGCTTAATTCTAGTACTAAAGACATAAAAGATCATGAAGTAATTAATGAATCAAAGTACGCAGAAAATAAAGAATCCACTAGTAACTTAAATAAACAAAATGCCTATATTAAATGTAAACAAACAGAATATGAAAAAAGTGTTACAGGAAGAGAAGTTTATCGAACAAGAAGAATGACAATGTTTAAAAGAGTAACATCTATAGAAAATTTAAAAAATCATAAAGAAAGACAGAGACAATATATAAAAAAGAATACAGCTGTTAAATGGGATGATGATGCAGCAGATATTAAAAAGACAGATTCTCAATGTTCTTATAGTTGCCCAAAATGTACCAGGTGTTATTCCAGCAAAAGATCTTTGGATAGACATATATTAACTCATGATGAAAAGAAATTCACATGTGATAAATGTAATAAACATTTTTTTCAACTTGATAAATTGATACAACATAATAAACTACATATTGTTAAAGAAAAACCTAAACCAGTATTGTGTAAAATATGTAATAGGAATTTTAGGAAAACTGATACTATGGTAAGACATTTAAATGTTCATAAAAGAACTAATCCAAAGGAGGTCCTTTCTATTCTGAAAGAAATTAGAGATAAAAGAAAATTGGAAACCATAACTGAACCAGAAAAAAAAGAAGTTGAAAATAATAAAGATAAAAAAGATACAGAGGAAGAATTTGCAACTAATGAGAATAATACTTTAAGTGTCCTAAAAAAAAGGACTTTAGAATCTAAAGATAAAAAGTGTTCTGGCTCATTATCTACTGAACTACTAATGTCTACTGAAAACTTTGATTCTTTCGATCATGAAACACTATATCGATGTAACTACTGTACCAAACGTTATGCGAACGAAAAATCACTTCAGAAACATTTACAGATTCATATTGAAAAAAGATTTGTTTGCAATGTATGTAATATGAAATTCTTTCGCCAAGATAGATTAAATAGTCATAAAAATCGATATGGACATAATGAAAATTCAGCATTAGAAGTGCAAAAACCAAGTGACGATAAGTCAGCCATTAAATTAATAAACAGTTGGATCCGAGAGGAGCTTGATTCAGATAACGAGGAAAAGGGTTTTCCTTGTAAAATTTGTGGAAAATCATACGATACAAAAAAATCCTTACTAAAGCATCAATTAAGTACGCATAATACAGAAGGAGAAAACTGCACAACGTGCGGTAAGATGTGTGCCTGTGACGAGAAGGAGAAGAATCAACATAAATCAAACGAAAGATTAAAACCATATCGATGCGGAGAATGTAATAAATCCTTTGAAAAGGAAGTTAAATTACAAAAACATATAAGAATCCACGAGCGCGCTAAGGAACAGCAAGATGTAAATTTTAAACGATTTTTATGTCACATATGTAGCAAAACCTTTAGACAAAATACAGGTCTCATGTTCCATATGAGGACGCATACGGGATATAAACCTCATGTTTGTAAATATTGTGGAAGAGGATTCACTTCAAATTCTAATTGTATCAATCATGAAAGAACTCATACTGGTGATAGGCCGTTCGTTTGTCATTTTTGTAGTGCTGCTTTTGCCAAATCATGTACGCTTAAAGCACACATTACAACACATACTGGAGAAGCAAATTATCATTGTAAAACTTGCGGTAAATCGTTTAGGCGACTAAAGTACTTAAAAGAACACAAATTTACGCATACGGGGGAAAAACCGTATGCTTGTAAGATTTGTGGCACTGCATATAGCCATTCTGGTAGTTTATTCGTACATGAGAAAAAGTGTAAAGCGCAATATAACAGTTATCAATCCAATTCGACACAAAATATGCAAACCTATTGCGAATCGGAAACGTCTTCACCAACCTCTATCATTACCGTTTTACCGCAAGTTTATTTAAATAATACTAATGCGATAAACACACAAAGTAGCAAAACCTATATGGACAATATTCAAAAAATAAATTCTCAGAATATTGCTAACATAAATGCTGTTAATACATCAGATTTACATATTCACTCGAATTCCGAAATTTCTGATGTTTCTTTAGCTGTTAAAAGCTTCGCTCTTATCGGACAAATGTTTCAATCGTAG
- Protein Sequence
- MEIENKTTISSNDCGNVCRVCLATNQNNQCIFDSRRSDSINESTIDLSEKLRLCSGVEVLENDGLPSTICTKCILKINDAHELRRQCQQSDIQLRELYGKVEKIYNINLCKTTKDKYSQTDYSFTSDLIKIEADSFSAMGYNSYPMVMLNSSTKDIKDHEVINESKYAENKESTSNLNKQNAYIKCKQTEYEKSVTGREVYRTRRMTMFKRVTSIENLKNHKERQRQYIKKNTAVKWDDDAADIKKTDSQCSYSCPKCTRCYSSKRSLDRHILTHDEKKFTCDKCNKHFFQLDKLIQHNKLHIVKEKPKPVLCKICNRNFRKTDTMVRHLNVHKRTNPKEVLSILKEIRDKRKLETITEPEKKEVENNKDKKDTEEEFATNENNTLSVLKKRTLESKDKKCSGSLSTELLMSTENFDSFDHETLYRCNYCTKRYANEKSLQKHLQIHIEKRFVCNVCNMKFFRQDRLNSHKNRYGHNENSALEVQKPSDDKSAIKLINSWIREELDSDNEEKGFPCKICGKSYDTKKSLLKHQLSTHNTEGENCTTCGKMCACDEKEKNQHKSNERLKPYRCGECNKSFEKEVKLQKHIRIHERAKEQQDVNFKRFLCHICSKTFRQNTGLMFHMRTHTGYKPHVCKYCGRGFTSNSNCINHERTHTGDRPFVCHFCSAAFAKSCTLKAHITTHTGEANYHCKTCGKSFRRLKYLKEHKFTHTGEKPYACKICGTAYSHSGSLFVHEKKCKAQYNSYQSNSTQNMQTYCESETSSPTSIITVLPQVYLNNTNAINTQSSKTYMDNIQKINSQNIANINAVNTSDLHIHSNSEISDVSLAVKSFALIGQMFQS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01418508;
- 90% Identity
- iTF_00228837;
- 80% Identity
- -