Basic Information

Insect: Bombus pyrosoma
Gene Symbol: -
Assembly: GCA_014825855.1
Location: CM026139.1:5844164-5848021[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 1.3e-05 0.0012 19.3 2.4 1 23 167 189 167 189 0.98

2 8 0.00025 0.024 15.2 0.4 1 23 221 244 221 244 0.93

3 8 7e-05 0.0067 17.0 2.6 1 23 344 366 344 366 0.97

4 8 9.5e-06 0.00091 19.7 0.1 1 23 372 394 372 394 0.98

5 8 1.7e-06 0.00016 22.0 1.7 1 23 400 422 400 422 0.98

6 8 3.6e-07 3.4e-05 24.2 1.9 1 23 428 450 428 450 0.99

7 8 3.7e-06 0.00035 21.0 1.0 1 23 456 478 456 478 0.98

8 8 3.6e-05 0.0034 17.9 0.6 1 23 484 506 484 506 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	1.3e-05	0.0012	19.3	2.4	1	23	167	189	167	189	0.98
2	8	0.00025	0.024	15.2	0.4	1	23	221	244	221	244	0.93
3	8	7e-05	0.0067	17.0	2.6	1	23	344	366	344	366	0.97
4	8	9.5e-06	0.00091	19.7	0.1	1	23	372	394	372	394	0.98
5	8	1.7e-06	0.00016	22.0	1.7	1	23	400	422	400	422	0.98
6	8	3.6e-07	3.4e-05	24.2	1.9	1	23	428	450	428	450	0.99
7	8	3.7e-06	0.00035	21.0	1.0	1	23	456	478	456	478	0.98
8	8	3.6e-05	0.0034	17.9	0.6	1	23	484	506	484	506	0.97

Sequence Information

Coding Sequence: ATGGCCCTAGAATCAAATGGCAGCAACGTGGTGTGGTTGAACACAACCCGTCCTGATCAAATACAACAGAGCCAACCAATCGAACAGCCAGTGAAGTGTTCCATGTTTACTCAAACCGAGCAAACCAATAGTTTTACTCAAACGGAGCAGAGTAATTCGAGCTACGGCGATCAGAGACAGCAACAAGCAGCTATGTTTGACCCGCAACAAATACAGCAGCAGCAAGCTGCTCAAGGTCAACAATCACAGCAGCAACAATCTCAGCAGATGTATGTTACAACAGATAAGAAAGAGGATAAGTCCCAGCAGCAATCTGCAACTGCAGACTTCCCTTTCTATTACAATGTCAACATGCTTCAAAAGGTTCAAACAAATGCAGTGAGCACAATCGGTGCAATTACAACCGACGACAAGGGTTGCTATCGTTTTGATGTGCAACCTGTCGGTTATAACACATTATTAAATCAGATGAGTATTGCGGCTGCTACCAATGCGACCTTCAAATGTGATATTTGTGGTTTGGTCTTTGGGCATATGAGTTTGCTGAATCATCATAAACGGATTCATAATACAACACCTAGTAATCTTCAGCAACAACCACAGCAAGTTGTTGTACAAACACCTACAACAGTTACTGTTGCAACTACACCAGAAAGACCATATACCTGTGATGTGTGTGGAGCTTGTTTTGCATTACCAGGAGAATTAAAAAGCCATAAGACAAATATGCACCAGAAACCAAAGGTGCAGATTTGTGAAGATTGTGGCAGTGAAGACCCTTGTGAACATCATCCTACTAAAATTAAAAAGACTATCAAACCTGGTCATCATCCTGTGAAACGAAGGGGTGTCACCAGTGTTACTAAGTGTCATAAATGTAATGGCACAGGAATAATTTTTATTGGTAAACACGACGAAAAACTAGATTCTGGAATCAGTTCCCTCGCAAAGTGTGGCGGCTGCAAGGCAACAGGCCGCATCATCATAGGAAGCGGTAAACAGAACAGTCAAAATCAGGCAGAGAAGCCGTTTCATTGCAACGTATGTGATGGAACATTCTCCAGATATTCGTCACTTTGGTCCCATAAGAGACTTCATTCTGGAGACAAACCTTTCAAGTGCGAAGTTTGTGGCTTAGCTTTTGCAAAAGCTGCTTATCTAAAAAATCATGGACGAGTGCATACTGGTGAAAAACCGTTTAAATGTAGTGTTTGTGGTATGCAGTTTTCGCAAAGTCCTCATTTAAAGAATCATGAGAGAATTCATTCTGGTGAACGTCCTTATCAGTGTGAAGTGTGTGAAAAAACATTCGCCAGACATTCGACCCTTTGGAATCACAGAAGAATTCATACCGGTGAAAAACCTTATAGATGTAATATATGCGGTTCGGCCTTTAATCAAGCTACACATCTGAAAAATCACGCGAAGGTTCATACTGGTGAAAAGCCCCATAGATGTGATATATGTGAGATCGGATTTTCCGATCGCTTCGCATTAAAGCGTCATCGTGCAATTCATGAAAAGTACGGTCAAACTGCCCGAAGTCAGAATGCGAATAATCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCCTGTTACCGTAAGTCAAGGTCAAGGGCAAGCGGTAATGCTCGAAGAAGTCTACAAGTGTCAGGTGACCTTTCCAGAGCCTAAATGA
Protein Sequence: MALESNGSNVVWLNTTRPDQIQQSQPIEQPVKCSMFTQTEQTNSFTQTEQSNSSYGDQRQQQAAMFDPQQIQQQQAAQGQQSQQQQSQQMYVTTDKKEDKSQQQSATADFPFYYNVNMLQKVQTNAVSTIGAITTDDKGCYRFDVQPVGYNTLLNQMSIAAATNATFKCDICGLVFGHMSLLNHHKRIHNTTPSNLQQQPQQVVVQTPTTVTVATTPERPYTCDVCGACFALPGELKSHKTNMHQKPKVQICEDCGSEDPCEHHPTKIKKTIKPGHHPVKRRGVTSVTKCHKCNGTGIIFIGKHDEKLDSGISSLAKCGGCKATGRIIIGSGKQNSQNQAEKPFHCNVCDGTFSRYSSLWSHKRLHSGDKPFKCEVCGLAFAKAAYLKNHGRVHTGEKPFKCSVCGMQFSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCNICGSAFNQATHLKNHAKVHTGEKPHRCDICEIGFSDRFALKRHRAIHEKYGQTARSQNANNPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVTVSQGQGQAVMLEEVYKCQVTFPEPK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01514338;
90% Identity: iTF_00230225;
80% Identity: -