Basic Information

Insect: Bombus pyrosoma
Gene Symbol: -
Assembly: GCA_014825855.1
Location: CM026129.1:173972-177308[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0028 0.27 11.9 1.9 2 23 261 282 260 282 0.96

2 11 0.0034 0.32 11.7 0.9 1 23 290 313 290 313 0.95

3 11 0.00019 0.018 15.6 3.3 1 23 370 392 370 392 0.98

4 11 1.7e-06 0.00016 22.1 1.5 2 23 441 462 440 462 0.97

5 11 1.5e-05 0.0014 19.0 0.8 1 23 467 490 467 490 0.96

6 11 4.2e-06 0.0004 20.8 0.3 1 23 528 550 528 550 0.98

7 11 7.1e-07 6.8e-05 23.2 0.9 1 23 560 582 560 582 0.96

8 11 2e-06 0.00019 21.8 1.2 1 23 588 610 588 610 0.99

9 11 1e-05 0.00097 19.6 0.2 1 23 616 638 616 638 0.98

10 11 7.7e-05 0.0073 16.8 4.6 1 23 644 666 644 666 0.98

11 11 0.0003 0.029 15.0 0.4 1 21 672 692 672 693 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0028	0.27	11.9	1.9	2	23	261	282	260	282	0.96
2	11	0.0034	0.32	11.7	0.9	1	23	290	313	290	313	0.95
3	11	0.00019	0.018	15.6	3.3	1	23	370	392	370	392	0.98
4	11	1.7e-06	0.00016	22.1	1.5	2	23	441	462	440	462	0.97
5	11	1.5e-05	0.0014	19.0	0.8	1	23	467	490	467	490	0.96
6	11	4.2e-06	0.0004	20.8	0.3	1	23	528	550	528	550	0.98
7	11	7.1e-07	6.8e-05	23.2	0.9	1	23	560	582	560	582	0.96
8	11	2e-06	0.00019	21.8	1.2	1	23	588	610	588	610	0.99
9	11	1e-05	0.00097	19.6	0.2	1	23	616	638	616	638	0.98
10	11	7.7e-05	0.0073	16.8	4.6	1	23	644	666	644	666	0.98
11	11	0.0003	0.029	15.0	0.4	1	21	672	692	672	693	0.94

Sequence Information

Coding Sequence: ATGGAAGTTTCGAAAAACGAGCAATTAGTTGATACATATGAGAAAATTTATGGAGATGAATGCCGAATCTGTTTGAAAAAAGCTGTTGAAATTTGTGAACTTTTTAAAGATGGGGACGCTATTCCTCGAAAACTTATGGCCGTTGCTTCTGTACAGATTGCAGAAGGAGATGGTTTACCACCAGTGATTTGCTTGCGTTGTAACCAGCGTTTAGATGCATCCTACGATTTTAAATGTCAAATACAAAATTCAGATGAGAAGCTTCGTCAAATTCTAAAGCTAAAATCTTCTTCTAACGATTCTGTTACCAACGCCAGCACTATAGTTACAGCAATAATCGCTGATGTGATATCTAGTGTAATATCTTCTGAGAAAGAAAATACAGAAAAACAAGAAGTTTGTTCTACAAATTTCTGCAATGATAATTTTTGCTTTACAAAAGATGAAACAGCTTTTTGTCTCAATTCAGAGAAGAACTTGTTTTGTTACGAAAAAGAATCATCACACAGTCGATTAAACGATACAGAGCAAAGAAAGAGCCTAGAAAATGTAAATGTTTATAAAAGTTTATTAGAGGATGATTCTGTAAGACAAATCGATTCGATAAAACAAGAGTTTGTTTTATTAGACGATCATATGGTACAAACTAAAGATGTTCCATTAAAAGGAGAAGCGAGTATCGAAGAAAGTCAACAGATGTCAGAAGAGACATCAAAGACAGATAGTATTCAAGATGATGATGATGATGAAAAACCATTAATTTCACGCACAACTAGATTACGCTGTACACAATGTATCAAGTCTTTTCATACAAAAGTGGCTTTGCAGAGACACACCATTGTACATAAACGTAAAACCAAATTACGTTATGTTTGTTATGTTTGCGATAAACAATATTCTACGCTTGCAAAAGTGAAAAATCATGTTGCAATTTGCCACGAAGCTCGCGATAGAAAAGAAAATATTCAACATAAGAGAATTAGTTATGAGCAAAATAAAGCAATCGCGAGTGTACAAGATAAAAGGATTAATAGTAATGTCCAAGATAAAAGAATAAAAATTCAAAAAAATGATGACTCTCCTAAGGAACAACGAAAAAGCTTAAAATTTACTTGCAAAGTGTGTTCAAAACAATTTACTTATCAAAAATCTTTTATCACACATGCTAAAAGTCATCCAGAGTATAAACTGGAAGAATTAGATGATTCGTCTCAATGTTGGGTAAAAGAAAGATGTACAGAAACTGTGGTGGAAGAAGAAGAAAATGAAGAGGAAGACGAAGAAGATGAGGAAGATGAAAACCTTCCTGCTGAAAGTTTACAGTGCACTCAGTGTGGGAAATTATTTGCAACAAAAAGAAATCTTAAAAGGCATGTCTCCACACATAGTGGATTAAAATATACGTGTGAAACATGTGGTAAAGGATTCTCAAGAGTGGATAAATTAAAAGATCATGAACAATCAAAGCACAAGGCTGAATTATTCGACAATTCTGATTTGGATGATAAAGAGGACACAGACAATGTAGTTAATAAAGGTGACTGTTTAGAAGGGAGAAAGAAAGATCGTCACAATAGACCTCACAAATGTGCAATCTGCCCTAAATCGTTCGCGCAAGCGCAATCGCTAGCGAATCACATAGAACGTCATAAGCGGGTAAAAGAAACTCAAAAAAGATTTCTTTGCGAAGTCTGTAGCAAGTGTTTTGCACAGAGTGGTTCTCTGGTTGCGCACATGCGTACACATACAGGAGTTAAGCCATATGTTTGTAACGTGTGTAGTAGAGCATTTACAAAGAGCACTTATCTACAATTGCATCTACGTACTCATAGTGGTGAAAAACCTTATATTTGCCAGTATTGTAGTAGGGCGTTTGCACGTGCTAACACATTAGCACGGCACATAACGATGCATACAGGGGAAGCAAAATATCATTGTCAGATTTGTACAAAATCATTTAGAAGACTGACTTCGTTGAATGAACACACTTATACACACACTGGGCAGAGACCATATGCTTGCAAAATTTGTACAAAGAGATATAACAATGCAGGGTCACTTTACGCCCATAGAAAGAAGTGCAAGGCACAGCAATTATCTAACCCTGGATTCGCGGTTTCCGTGGAAACCTGTACTGTATCAGAACAACAAGAAGTAGACGTTCCACAAGTTTTGATCTATTCCCACAGGAAATTAGTAGAGGACGCAACTGTTGGGCAAGTCACGCCCACACCACAGTACATGCTCGCAAATGTACACAATCAGAAGAATTTGGGATCAAATATTATACAACCGTTTTCAGTGGATGATTCAAATGTTTATACAATTAATACGAAGCAATTTAAGAATCCCTATTATACAATTTATCCAAACATGTAA
Protein Sequence: MEVSKNEQLVDTYEKIYGDECRICLKKAVEICELFKDGDAIPRKLMAVASVQIAEGDGLPPVICLRCNQRLDASYDFKCQIQNSDEKLRQILKLKSSSNDSVTNASTIVTAIIADVISSVISSEKENTEKQEVCSTNFCNDNFCFTKDETAFCLNSEKNLFCYEKESSHSRLNDTEQRKSLENVNVYKSLLEDDSVRQIDSIKQEFVLLDDHMVQTKDVPLKGEASIEESQQMSEETSKTDSIQDDDDDEKPLISRTTRLRCTQCIKSFHTKVALQRHTIVHKRKTKLRYVCYVCDKQYSTLAKVKNHVAICHEARDRKENIQHKRISYEQNKAIASVQDKRINSNVQDKRIKIQKNDDSPKEQRKSLKFTCKVCSKQFTYQKSFITHAKSHPEYKLEELDDSSQCWVKERCTETVVEEEENEEEDEEDEEDENLPAESLQCTQCGKLFATKRNLKRHVSTHSGLKYTCETCGKGFSRVDKLKDHEQSKHKAELFDNSDLDDKEDTDNVVNKGDCLEGRKKDRHNRPHKCAICPKSFAQAQSLANHIERHKRVKETQKRFLCEVCSKCFAQSGSLVAHMRTHTGVKPYVCNVCSRAFTKSTYLQLHLRTHSGEKPYICQYCSRAFARANTLARHITMHTGEAKYHCQICTKSFRRLTSLNEHTYTHTGQRPYACKICTKRYNNAGSLYAHRKKCKAQQLSNPGFAVSVETCTVSEQQEVDVPQVLIYSHRKLVEDATVGQVTPTPQYMLANVHNQKNLGSNIIQPFSVDDSNVYTINTKQFKNPYYTIYPNM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00118159;
90% Identity: iTF_01417854;
80% Identity: -