Basic Information

Insect: Bombus polaris
Gene Symbol: -
Assembly: GCA_014737335.1
Location: JACXIO010000192.1:1512816-1514372[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 2.8e-06 0.00029 21.4 2.1 1 23 101 123 101 123 0.98

2 9 0.00092 0.094 13.5 1.9 1 23 128 152 128 152 0.90

3 9 6.5e-07 6.6e-05 23.4 1.2 1 23 190 213 190 213 0.96

4 9 6.5e-07 6.6e-05 23.4 0.8 1 23 246 268 246 268 0.99

5 9 8.6e-05 0.0087 16.7 4.0 1 23 282 304 282 304 0.96

6 9 8.1e-05 0.0082 16.8 4.7 1 23 310 332 310 332 0.98

7 9 0.00072 0.073 13.8 3.2 1 23 338 360 338 360 0.98

8 9 5e-05 0.0051 17.5 6.6 1 23 366 388 366 388 0.97

9 9 0.00011 0.012 16.3 0.3 1 21 394 414 394 415 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	2.8e-06	0.00029	21.4	2.1	1	23	101	123	101	123	0.98
2	9	0.00092	0.094	13.5	1.9	1	23	128	152	128	152	0.90
3	9	6.5e-07	6.6e-05	23.4	1.2	1	23	190	213	190	213	0.96
4	9	6.5e-07	6.6e-05	23.4	0.8	1	23	246	268	246	268	0.99
5	9	8.6e-05	0.0087	16.7	4.0	1	23	282	304	282	304	0.96
6	9	8.1e-05	0.0082	16.8	4.7	1	23	310	332	310	332	0.98
7	9	0.00072	0.073	13.8	3.2	1	23	338	360	338	360	0.98
8	9	5e-05	0.0051	17.5	6.6	1	23	366	388	366	388	0.97
9	9	0.00011	0.012	16.3	0.3	1	21	394	414	394	415	0.93

Sequence Information

Coding Sequence: ATGGTAAGACATTTAAATGTTCATAAAAGAACTAATCCAAAGGAGGTCCTTTCTATTCTGAAAGAAATTAGAGATAAAAGAAAATTGGAAACCATAACTGAACCAGATAAAAAAGAAATTGAAAATAATAAAGATAAAAAAGAAACAGAGGAAGAATTTGCAACTAATGAGAATAATACTTTAAGTGTCCTAAAAAAAAGGACTTTAGAATCTAAAGATAAAAAGTGTAATTCTGGCTCATTATCTACTGAACTACTGATATCTACTGAAAACTTTGATTCTTTTGATCATGAGACACTTTATCGATGTAACTACTGTACCAAGCGTTATGCGAATGAAAAATCTCTTCAAAAACATTTACAGATTCATATTGAAAAAAGATTTGTTTGCAATGTATGTAATATGAAATTCTTTCGGCAAGATAGATTAAATAGTCATAAAAATCGATATGGACATAATGAAAATTCAGCATTAGAGGTGCAAAAACCAAGTGACGATAAGTCAGCCATTAAATTAATAAACAGTTGGATCCGAGAGGAGCTTGATTCAGATAACGAGGAAAAGGGTTTTCCTTGTAAAATTTGTGGAAAATCATACGATACAAAAAAATCCTTACTAAAGCATCAATTAAGTACGCATAATACAGAGGGAGAAAACTGCACAACGTGCGGTAAGATGTGTGCCTGTGATGAGAAGGAGAAAAATCAACATAAATCAAACGAAAGATTAAAACCATATCGATGCGGAGAATGTAATAAATCCTTTGAAAAGGAAGTTAAATTACAAAAACATATAAGAATCCACGAGCGCGCTAAGGAACAGCAAGATGTAAATTTTAAACGATTTTTATGTCACATATGTAGCAAAACCTTTAGACAAAATACAGGTCTCATGTTCCATATGAGGACGCATACGGGATATAAACCTCATGTTTGTAAATATTGTGGAAGAGGATTCACTTCAAATTCTAATTGTATCAATCATGAAAGAACTCATACTGGTGATAGACCATTCGTTTGTCACTTTTGTAGTGCTGCCTTTGCCAAATCATGTACGCTTAAAGCACACATTACAACACATACTGGAGAAGCAAATTATCATTGTAAAACTTGCGGTAAATCGTTTAGGCGACTAAAGTACTTAAAAGAACACAAATTTACGCATACGGGGGAAAAACCATATGCTTGTAAGATTTGTGGCACTGCGTATAGCCATTCTGGTAGTTTATTTGTACATGAGAAAAAGTGTAAAGCGCAATATAACAGTTATCAATCCAACTCGACACAAAATATACAAACCTATTGCGAATCGGAAACGTCTTCACCAACCTCTATCATTACCGTTTTACCGCAAGTTTATTTAAATAATACTAATGCGATAAACACACAAAGTAGCAAAACCTACATGGACAATATTCAAAAAATAAATTCTCAGAATATTGCTAACATAAATGCTGTTAATACATCAGATTTACATATTCACTCGAATTCCGAAATTTCTGATGTTTCTTTAGCTGTTAAAAGCTTCGCTCTTATCGGACAAATGTTTCAATCGTAG
Protein Sequence: MVRHLNVHKRTNPKEVLSILKEIRDKRKLETITEPDKKEIENNKDKKETEEEFATNENNTLSVLKKRTLESKDKKCNSGSLSTELLISTENFDSFDHETLYRCNYCTKRYANEKSLQKHLQIHIEKRFVCNVCNMKFFRQDRLNSHKNRYGHNENSALEVQKPSDDKSAIKLINSWIREELDSDNEEKGFPCKICGKSYDTKKSLLKHQLSTHNTEGENCTTCGKMCACDEKEKNQHKSNERLKPYRCGECNKSFEKEVKLQKHIRIHERAKEQQDVNFKRFLCHICSKTFRQNTGLMFHMRTHTGYKPHVCKYCGRGFTSNSNCINHERTHTGDRPFVCHFCSAAFAKSCTLKAHITTHTGEANYHCKTCGKSFRRLKYLKEHKFTHTGEKPYACKICGTAYSHSGSLFVHEKKCKAQYNSYQSNSTQNIQTYCESETSSPTSIITVLPQVYLNNTNAINTQSSKTYMDNIQKINSQNIANINAVNTSDLHIHSNSEISDVSLAVKSFALIGQMFQS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00873941;
90% Identity: -
80% Identity: -