Bpol021090.1
Basic Information
- Insect
- Bombus polaris
- Gene Symbol
- lov_1
- Assembly
- GCA_014737335.1
- Location
- JACXIO010000038.1:1306616-1311751[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.4e-18 1.1e-14 54.2 0.0 2 44 546 588 545 589 0.94
Sequence Information
- Coding Sequence
- ATGTCAAGCGCCGCGGACAGTCCTGATGCTATGCAGTCGCACTATTCCTTACGGTGGAACAATCATCAGACGCACATACTTCAGGCCTTCGAGGCGTTGCTACACGCGGAGATACTTGTCGACGTGACCCTGGTCTGCGCCGAGACCAGCCTTAGGGCGCATAAGGTTGTGCTTAGTGCCTGCAGCCCATTCTTCGAAAGGATATTTTCCGAGCACCCCTGCAAACACCCGGTGATCGTACTAAAGGATTTTCCCGGTCACGAAATAGCGGCGCTGATCGACTTTATGTACCGTGGCGAGGTGAGGGTCGGTCGCGAGGAACTCGCAGGACTGATGAGAGCCGCGGAGAGTCTACAAGTGCGTGGATTAGCTTCATCGGAACCGAGGCTGACGTCACCGCCGGAAACGCCGACTGCCGATATGCTGCTTGGCGAGTCACCGACGCCCGAGGGCGCGAGGCAGGAAACTCCAGAGGAGGATGACAACGTTTCGGAAAGCACGGCGCCGCCGTCCACCCGAGAGCCGGTGCCGGCAGCGACACCCGCCATTTTTCACCCTAGCAGGGACCATCGCGATAGGTTACCGCACATGGGCCATCTGAACTTCGGGATGCGCGAGCCGCGAGAGAGTTGTGGATCGCCGCTACCTCGACGAAAACAGGCTCGGCCGCGAAGAAGATCCAGCGAATTGGTGCCGCAGGATCTCAGTCGACCTCATCCACCGTCGAGTCTTAGCCCGTTGGTGAGCGGATTGAATTTCGCCGGTGTTAATCAACAATCGCAACACCAACAACACCAACAGCCCTTGAACTCAAGCACGCAGAACCACATACAGCAGGAAGATATGGCGGAGAATCTTTCGATGAAGAGACCGATGTCGCCCAACGGAGCCGACCATCACAACATAAAAGCGGAGAGCAGCGAAGCGGCCAGTAGTCCGAGGGGATCTCCGTTAACCGGCACGAGTCTGCTGCATCCTGACGGTTCCCTCCAAGATATTCCGTCTGTTGCGGCAGCAGCGGCGGCCGCTGCCGCCGCGGCGGGCTTACCGACGATGTCGGCCTTTTCGCTGACATCGCCGCATCATCACAGCGAGTACCTGACGAGTCTGGGTCAGTTAGCGGCCCAGTGGTTACCGAATCATCCGCAGAGCCAATTGCCGCCTCCACCTCAGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCACGACGAAGTTCCGTCACGACCATGTTCTCGTTGGACGGTGTCGCGTCTCTAGGTGGTGGACTGTTTCCTCACGCGGGTGCTCTCGACAGAGGATCCCTTTTGGCGGATCTTCACGATAGCTTTAAACCGGAAACGTTGCACGGACTTTTCGGCGCGGCGGGTCTGAGCACCCATCATACGGGAAAAAAACCAAAGAAACACAGGGGCGACGGTGACGCAGCGCGCAGATGGGCAGACCAAGGCGGTCGAGGACCACCGGCACCAAGGCCGAAAGGTCAGCACAGCGCACCCAGAGGCGGACCGCCGCGGTCTTGGACGAACTCGGAGCTGACCGAGGCGTTGCAGCACGTTTGGAACAAGAAGATGACCACGTCGCAAGCAAGCAGAATCTTCGGTATACCGTACAACAGTCTATTGATGTACGTGCGAGGCAAGTACGGGAAAAGTTTGAAACTCGAACAACTGAGAAGGGACTGCACGGGCGCGGCAGCGGCCGAAGTAGTAATTAATCCGTTGAACAACAACGTTAAGGCCGTCCAGCCGCCGACGCAGATGGCTCATCCGCTCGCCGGTCTACCGCCGCACCCGGGCGACGACGGTGTATTTCCTCATCATTCGTTGCTCGGCGCTAATCTACCACAGGGTTTCTTTCCTGAATTTGCCGCCGCCGCGTTCCCCGTTCCGGTTAGTATGGTGCATTTACTTCCTCCAAGCGAACAAAAGGCCTTCGAACCGGCGGCGAATCCCGCTGGCACGAGTGGGTGCGGGAACGGGAGCGGGAGCGCAAGCGGGAATGGCGGCGATCTTAATACTTCGCGGAGCAGTCGATCGCCATCGCCGGTTGATCATAATCGTTATAATCATCATCGTCGTCGTTATCCCGAATCGCTACAGCCGCAACCGCCACAGTCGGCACCCACGCTACTTCAACAAAATGGTTCGGATTAG
- Protein Sequence
- MSSAADSPDAMQSHYSLRWNNHQTHILQAFEALLHAEILVDVTLVCAETSLRAHKVVLSACSPFFERIFSEHPCKHPVIVLKDFPGHEIAALIDFMYRGEVRVGREELAGLMRAAESLQVRGLASSEPRLTSPPETPTADMLLGESPTPEGARQETPEEDDNVSESTAPPSTREPVPAATPAIFHPSRDHRDRLPHMGHLNFGMREPRESCGSPLPRRKQARPRRRSSELVPQDLSRPHPPSSLSPLVSGLNFAGVNQQSQHQQHQQPLNSSTQNHIQQEDMAENLSMKRPMSPNGADHHNIKAESSEAASSPRGSPLTGTSLLHPDGSLQDIPSVAAAAAAAAAAAGLPTMSAFSLTSPHHHSEYLTSLGQLAAQWLPNHPQSQLPPPPQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRRSSVTTMFSLDGVASLGGGLFPHAGALDRGSLLADLHDSFKPETLHGLFGAAGLSTHHTGKKPKKHRGDGDAARRWADQGGRGPPAPRPKGQHSAPRGGPPRSWTNSELTEALQHVWNKKMTTSQASRIFGIPYNSLLMYVRGKYGKSLKLEQLRRDCTGAAAAEVVINPLNNNVKAVQPPTQMAHPLAGLPPHPGDDGVFPHHSLLGANLPQGFFPEFAAAAFPVPVSMVHLLPPSEQKAFEPAANPAGTSGCGNGSGSASGNGGDLNTSRSSRSPSPVDHNRYNHHRRRYPESLQPQPPQSAPTLLQQNGSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00221362;
- 90% Identity
- iTF_00226013;
- 80% Identity
- iTF_00226013;