Basic Information

Insect: Bombus picipes
Gene Symbol: -
Assembly: GCA_014737485.1
Location: JACXIP010000030.1:11296110-11299109[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00034 0.035 14.8 4.1 1 23 228 250 228 250 0.97

2 10 1.1e-05 0.0011 19.5 1.5 1 23 256 278 256 278 0.98

3 10 0.00036 0.037 14.7 2.2 1 23 284 307 284 307 0.96

4 10 0.012 1.2 9.9 3.8 1 21 313 333 313 335 0.95

5 10 0.58 58 4.6 0.7 9 23 347 361 341 361 0.92

6 10 0.00011 0.011 16.3 1.7 1 23 369 392 369 392 0.97

7 10 2.4e-05 0.0024 18.4 2.5 2 23 399 420 398 420 0.97

8 10 0.0002 0.02 15.5 0.3 1 23 426 448 426 448 0.99

9 10 0.036 3.6 8.4 9.1 1 19 454 472 454 477 0.91

10 10 6.1e-08 6.1e-06 26.6 2.0 1 23 491 513 491 513 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00034	0.035	14.8	4.1	1	23	228	250	228	250	0.97
2	10	1.1e-05	0.0011	19.5	1.5	1	23	256	278	256	278	0.98
3	10	0.00036	0.037	14.7	2.2	1	23	284	307	284	307	0.96
4	10	0.012	1.2	9.9	3.8	1	21	313	333	313	335	0.95
5	10	0.58	58	4.6	0.7	9	23	347	361	341	361	0.92
6	10	0.00011	0.011	16.3	1.7	1	23	369	392	369	392	0.97
7	10	2.4e-05	0.0024	18.4	2.5	2	23	399	420	398	420	0.97
8	10	0.0002	0.02	15.5	0.3	1	23	426	448	426	448	0.99
9	10	0.036	3.6	8.4	9.1	1	19	454	472	454	477	0.91
10	10	6.1e-08	6.1e-06	26.6	2.0	1	23	491	513	491	513	0.98

Sequence Information

Coding Sequence: ATGACAAGTAATGCAACAACGATTAAGTTAGAAGAGGAGCAAGAATCTGTAACAGAGATACAGACTTACTTAGAAACATTTAATAAAGAAATAGAAGGAGGTCAAGGAGAGCAATTACAGCATGTGCAGCTGCAACAAGTGGAAGGATTGTCAGGTGGTGAAGAGGGTGGAACTTACTTTGTTGATCAATCTGGTCAATATTACTACCAAGCAAACAATGATGAAACACCTGTAATGACACAGGTACAAATCCAAGAAGTAGAAGAAGCAGATGTACAAAATGAAGAAGAAACACTTGAAGAAGAAGAATTCCATGAAATTGGAGAATTAGAAAATGTTGATGGTGATGAAGATGGGCAGATAGTTAGTAATGGAAATAATGAGGTTGTAATCAATTCTGGAGATCCGTATCAAACAGTTACTATTGTACCATCTGATACTAATCCTGCTGAAGTCAGTTATGTACTAATAGTTCAACAACCAGATGATGAGGATAAGGAAAGCAGACTGGTAGAGCAAGAGGGAACTGAAGGTGAAGAAGGAAAAGGAGAACAAGATCTTACAGTTTATGACTTTGAAGATAATGAAGATAATGAAGTACCTGTGGAATCAGAAGCAGAAGATGACAAAACTAAGATTGTAAAAATTTTACCTAAAAAGTCTCAAACTGTTACTCAAGCTCATATGTGTAATTACTGTAACTACACAAGTCCGAAACGATATCTGCTATCACGACATATGAAATCACATTCTGAGGAAAGGCCACATAAATGTAGCGTTTGTGAAAGAGGATTTAAAACTCTGGCCTCGCTTCAAAATCATGTTAATACACATACTGGGACCAAGCCACATCGTTGTAAATTTTGTGAAAGTGCATTCACAACTTCTGGTGAACTTGTTAGACATGTTCGATATAGACACACCCATGAAAAGCCACATAAATGTCCTGAATGTGACTATGCATCTGTTGAATTGTCTAAACTCCATCGTCATATTCGGTGTCATACAGGCGAACGTCCATATCAGTGTCCGCATTCAAGATTTACTCAGTCTAACAGCTTAAAAGCTCACAAATTGATACATAACGTTGGGAACAAGCCAGTCTTTCAATGTGAATTATGTCCAGTAACTTGTAGGAGAAAAACAGATCTCAGAATTCATGTACAAAAATTACACACCTCTGATAAACCTCTGAAATGTAAACGCTGTGGAAAATCATTCCCAGATAGATATAGTTACAAACTGCATAGTAAAACTCACGAAGGGGAAAAGTGTTATAAATGTGATTTATGCCCATATGCTTCTATATCCGAGCGCCATCTCGAAAGCCACATGTTAATTCATACGGACCAAAAACCATATCATTGTGATCATTGCTTTCAATCATTCAGACAGAAACAACTTCTTAAACGGCATTGTAACTTGTATCACAATCCTTCTTATGTTCCTCCTGCACCTCAAGAGAAGTCACATCAATGCCCTGAATGTGAACGATCGTTCAGGCATAAAGGAAACCTAATTCGACATATGGCTGTGCATGACCCAGAGTCATCCATTCAAGAAAAGCAACAAGCATTGAAGATGGGAAGACAGAAAAAGATTCAAATAATAGATGGGCAAAGAGTAGAGGTCATGACAGGTGATTTAGCTACTAAGCTTAAAGATTATGAAGAAGAAGATGAAGATGATGTGATGGCAGTCGAGGGAAGTGATGGTCAGCAATATGTTGTATTGGAGGTTATACAGCTAGCTGACAATCAAGGAACTGATCAACAAATGGCTGTTGTAGCTAACGAAGATGGAGATTTATTGATGCAAGATCCTTTGAGTCAAGAAAGTGGGATTGTAACTGGTAAAATTGGGGGAGGAGATGAAGTAAAAGAAGAAGATATAGAAATAGATGAGTTGAAAATGGAATCAGAAGCGTGTACTAAATCTTTGTCGCGGAACATGCAAAGCGATCCAAAATTACAGAAAGAAATGGAAACATGTTTTGGTTTTGACGAGGAAGAGGAGGAAGAAGAAGAAGCCAATGATAATATAAATATATTGCAGACAATTTCTTAA
Protein Sequence: MTSNATTIKLEEEQESVTEIQTYLETFNKEIEGGQGEQLQHVQLQQVEGLSGGEEGGTYFVDQSGQYYYQANNDETPVMTQVQIQEVEEADVQNEEETLEEEEFHEIGELENVDGDEDGQIVSNGNNEVVINSGDPYQTVTIVPSDTNPAEVSYVLIVQQPDDEDKESRLVEQEGTEGEEGKGEQDLTVYDFEDNEDNEVPVESEAEDDKTKIVKILPKKSQTVTQAHMCNYCNYTSPKRYLLSRHMKSHSEERPHKCSVCERGFKTLASLQNHVNTHTGTKPHRCKFCESAFTTSGELVRHVRYRHTHEKPHKCPECDYASVELSKLHRHIRCHTGERPYQCPHSRFTQSNSLKAHKLIHNVGNKPVFQCELCPVTCRRKTDLRIHVQKLHTSDKPLKCKRCGKSFPDRYSYKLHSKTHEGEKCYKCDLCPYASISERHLESHMLIHTDQKPYHCDHCFQSFRQKQLLKRHCNLYHNPSYVPPAPQEKSHQCPECERSFRHKGNLIRHMAVHDPESSIQEKQQALKMGRQKKIQIIDGQRVEVMTGDLATKLKDYEEEDEDDVMAVEGSDGQQYVVLEVIQLADNQGTDQQMAVVANEDGDLLMQDPLSQESGIVTGKIGGGDEVKEEDIEIDELKMESEACTKSLSRNMQSDPKLQKEMETCFGFDEEEEEEEEANDNINILQTIS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01001593;
90% Identity: iTF_01421078;
80% Identity: -