Bpas016383.1
Basic Information
- Insect
- Bombus pascuorum
- Gene Symbol
- -
- Assembly
- GCA_905332965.1
- Location
- HG995269.1:75490-87970[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.27 29 5.7 0.2 2 19 134 151 133 154 0.91 2 13 0.026 2.7 8.9 0.8 1 21 160 180 160 181 0.93 3 13 0.014 1.5 9.8 7.5 1 23 191 214 191 214 0.93 4 13 6.3e-05 0.0066 17.2 2.9 1 23 638 661 638 661 0.97 5 13 5.6 5.9e+02 1.6 1.2 5 23 668 687 667 687 0.94 6 13 0.052 5.5 8.0 1.0 3 23 695 715 694 715 0.94 7 13 0.54 57 4.8 2.8 1 20 742 761 742 763 0.89 8 13 0.0081 0.86 10.5 1.5 1 22 864 885 864 885 0.96 9 13 0.00046 0.048 14.4 0.9 2 23 893 915 893 915 0.93 10 13 0.0027 0.29 12.0 4.4 1 23 925 948 925 948 0.95 11 13 3 3.2e+02 2.4 0.2 3 19 969 985 967 988 0.91 12 13 3.9 4.1e+02 2.1 1.7 1 23 995 1018 995 1018 0.87 13 13 0.0093 0.98 10.3 5.8 1 23 1029 1052 1029 1052 0.94
Sequence Information
- Coding Sequence
- ATGTTCTGGATGCAAGTGAATAATAAGAAAGTAAGCAGTTTGTCTAGTGATAATAATAATAATTTCATAAAGCAAATGGCTCGAGTGTTAGTTTACGCACGCTCTGTTGATGCAGTCTTCATGGATATACAACTGGGCAGAAAAATGGATCCTTCTGAATATGCAATAAGAATAAAGGAAGAGCCAATCGATCCAGAGATATGCGATGATTTCTCGCCAGTTGATACGAATACAGGGAATGAAAATGAAACAACGACGTTTAATGGTGAATCTTCGGATGGCGTTTATCGTAGAAATCGAGAATCCGCGTTTCCTCAAGAAAGTACATATTTAGAAAATAACAAATCGGATCCTGATAGACGAAAAAGTAAACATAAAATACGTTCAAACAACAGAATAAGTTGTAATGTTTGTTTGTTAACTTTTCAAACTAAACAGTTATTGGAACTGCATAATAAATTATACAGCTGTAATATATTCAAGTGTAATAAGTGCACTGCGATCTTTAGTATGCATATTTCGTTGGTACGTCATTCAAAGATGCGATCTTGTACGAAACAAATGCATGGATATAGATGTAATTTTTGTAACCGAAGGTTTTCCTATAAAAGACATGTCCAATCTCATTTATTCCATATACATGGGAACGCAATATTTTCTGGTGAAAGCAAAATTACGAAAACATCTCCTGAATCGTTAGGAAAGTCGAATCATTCGGATGGCATAGTCATGGCAGAATCAAATACTTTGCACAGTCTTTCTACAAAAAACGAAAATAGCCCAATAAATATATCTTTGAAACCATCTAATAGTTCAAACAATACACCCACCAAGGGTTCGAGCAGCAAGATCAAGTCTACGCATTTAAAACGGTTAAGCGATTCGTATGGTACACATTCGAAAAGGATGAAGCAGACCATCCTTACAGACTTCATATCGCTGTATAAAGACAAATCGAATGACAAGTGGGTTAGCCCGGAAGAAGTTATCGATACGGGGAATATTCCTGTTACTGCGACTATTATTCCAACTTCAACGCTCGAGACATTTAGTAAGAAGACATCAACGGCTTCAGAAGTTATTCAGACGTCTACTTCTGCTAAGCGAATCGAATCTCCTGTTAGGAAAAGACCATTTGTTCAAATTCATGTGAATTCCAAAACAATGATATCTTTATTAAGGAACGAAATAGAAGCTGAATCTGAAAGCTCTAATACCTCGCACAATATGTCTTACAACCTTAGGCCAATAAAAAGATGTTCTTCTTCTTTATATGATTTTTACGATTTATTGAAGTTTGAGACCTTTGAAAGATCAAGACAATCCGTTAAAAGAAACAAGTCCCCCTATATGTTTAACCAAAGTGAAAGATCTGCACCTGAAGCTAAGTGTAAAGAATGTGTAGTCCGTTTGGAGAAATGCGACAAGTTCTTGGAGCCTACTAGTTTTGTGTCAAACGAAGACGTAGGCGAGGGCGAAGGCGAAGGCGAAGGCGAAGGCGAAGGCGAAGGCGAAGGCGAAGGCGAAGGCGAAGGCGAAGGCGAAGGCGAAGGCGAAGGCGAAGGCGAAGGCGAAGGCGAAGGCGAAGGCGAAGGCGAAGGCGAAGGCGAAGGCGAAGGCGAAGGCGAAGGCGAAGGCGAAGGCGAAGGCGAAGGCGAAGGCGAAGGCGAAGGCGAAGGCGAAGGCGAAGGCGAAGGCGAAGGCGAAGGCGAAGACGAAGACGAAGACGAAGACGAAGACGAAAAGGAAAAGGAAAAGGAAAACGAAGACGCTTTCAAACAAGCAGTATCGGAAAATGTGGAAGAGGAACTTGAAGGTTTTCGTGAGACAAGCTCGGCAGGTAGATCAATCGTACGTCAACGAGAGTCGGTTGAGTTTAAGAAGAACTTTAAGGTTAATAAGCAGAAAATATTTAAATGCCATGTTTGTAAAGCATCGTTTTCTTTGAAAATAAACTTGCGCGAACACATGAAATTGTTCCATCCGATTTACATGTCGTGCATATGCAACGCGCGTTACACGTCCATACATAAGTTAGTAGATCACTATCTACGTCAGCATATTGTGTTTAATCGAAGGGAATGTTGCGCGTGTTATGAGAAGTTTGGCACGTCGGCAATGTTGAAACAGCACATGGTTTCGCATTGTTTGAAGACCATAAGATCAGAAAACGACTCTCTACTGGTTGATGTTGAAATAAATTGCAACGCATTCCAGAAACCACACAAATGCAAAGGTTGTTGGAAACGATTTTGGCTATACTCGTGTTTGAAACAACATGAGAATGTATGTCGTCGAATGAAAGTGTTAATAGATGAACAACGTGCATCTCGTATAAACCATTTGTCTCGGTTCTTGAAAGAACCAAGTGAAATGGAAGTCAGCATAGTACAGTCGCCTGATTTGGAACAAATGTTGGATGTTCCGGGTGGGACGACAGGATCTTTGGAAAATTATTTGGCTCTGAGTACGCTTATTACCGATGATACTTTCTCTTCGTCGTTCGATACAGCTGCAAAGAAGAAAAGGCTACTTAATGGGATTGCATGCGTAAAGGGTTACCAAGTGAACCAAATGAACAGAACAAGGTTTCCTTGCACTGTTTGTGAGACACAATTCCGAACATTTCAAAGTTTGTGCATACACGAGCGCACCTATTGCCAAACAGCCACCGAAAAGTGTAACGTTTGTAAAACAATGTTTTCCACTAAACGATTATTACAGCTTCACGTGCTTGCTACTCATATGCCTTTGTGCTCGGTGAGCTGCAATTTCTTTTGTAAGTTCTGTAATCAAGGATTTGTTAAGAAATCGAGTCTTCAAATTCACGAACGACACTTCCATATTCGGCAGAATCCTAAACCGGTGCTGAATTCCGATTGCCTTTCGAAAGATAAACAAATCTGTGATACATGCAATTTGTTATTCGAATCCTACGAACATTTTGTCGAGCATAACATGTATTATTACAAGGGCGAAGATTTTTTATGCGCAGTATGTGGTAAGTTGTTTCAAGGAATGTACAAGTTTCATAATCACAACAAATTGGAGCATTATCCGGACAAATTACGGGAATTGTACTCTTACAAATGCGATACTTGTAACGAAGGCTTCAGCTACGAATCACATTTCCACGCTCATAAGCTACACGTTCATTCGCAGGATACGCCCGCTGACGAGACGCGCGACCGCGATACATCGGATCAAACTTTTCGCATGTGTTCATGA
- Protein Sequence
- MFWMQVNNKKVSSLSSDNNNNFIKQMARVLVYARSVDAVFMDIQLGRKMDPSEYAIRIKEEPIDPEICDDFSPVDTNTGNENETTTFNGESSDGVYRRNRESAFPQESTYLENNKSDPDRRKSKHKIRSNNRISCNVCLLTFQTKQLLELHNKLYSCNIFKCNKCTAIFSMHISLVRHSKMRSCTKQMHGYRCNFCNRRFSYKRHVQSHLFHIHGNAIFSGESKITKTSPESLGKSNHSDGIVMAESNTLHSLSTKNENSPINISLKPSNSSNNTPTKGSSSKIKSTHLKRLSDSYGTHSKRMKQTILTDFISLYKDKSNDKWVSPEEVIDTGNIPVTATIIPTSTLETFSKKTSTASEVIQTSTSAKRIESPVRKRPFVQIHVNSKTMISLLRNEIEAESESSNTSHNMSYNLRPIKRCSSSLYDFYDLLKFETFERSRQSVKRNKSPYMFNQSERSAPEAKCKECVVRLEKCDKFLEPTSFVSNEDVGEGEGEGEGEGEGEGEGEGEGEGEGEGEGEGEGEGEGEGEGEGEGEGEGEGEGEGEGEGEGEGEGEGEGEGEGEGEGEGEGEDEDEDEDEDEKEKEKENEDAFKQAVSENVEEELEGFRETSSAGRSIVRQRESVEFKKNFKVNKQKIFKCHVCKASFSLKINLREHMKLFHPIYMSCICNARYTSIHKLVDHYLRQHIVFNRRECCACYEKFGTSAMLKQHMVSHCLKTIRSENDSLLVDVEINCNAFQKPHKCKGCWKRFWLYSCLKQHENVCRRMKVLIDEQRASRINHLSRFLKEPSEMEVSIVQSPDLEQMLDVPGGTTGSLENYLALSTLITDDTFSSSFDTAAKKKRLLNGIACVKGYQVNQMNRTRFPCTVCETQFRTFQSLCIHERTYCQTATEKCNVCKTMFSTKRLLQLHVLATHMPLCSVSCNFFCKFCNQGFVKKSSLQIHERHFHIRQNPKPVLNSDCLSKDKQICDTCNLLFESYEHFVEHNMYYYKGEDFLCAVCGKLFQGMYKFHNHNKLEHYPDKLRELYSYKCDTCNEGFSYESHFHAHKLHVHSQDTPADETRDRDTSDQTFRMCS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -