Basic Information

Insect: Bombus pascuorum
Gene Symbol: -
Assembly: GCA_905332965.1
Location: HG995280.1:7597414-7601077[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.019 2 9.4 0.2 6 21 12 27 6 28 0.86

2 14 3.6 3.8e+02 2.2 0.0 2 20 34 52 33 54 0.91

3 14 0.83 88 4.2 0.4 1 12 236 247 236 256 0.89

4 14 0.012 1.3 10.0 3.1 1 23 366 388 366 388 0.97

5 14 0.0002 0.021 15.6 0.2 2 23 392 413 392 413 0.97

6 14 0.001 0.11 13.4 4.9 1 23 424 446 424 446 0.97

7 14 0.031 3.3 8.7 0.1 1 23 465 486 465 486 0.76

8 14 0.00059 0.062 14.1 0.1 2 23 492 513 491 513 0.95

9 14 4.3e-05 0.0045 17.7 4.8 1 23 542 564 542 564 0.99

10 14 1.8e-06 0.00019 22.0 3.7 1 23 570 592 570 592 0.96

11 14 0.00011 0.012 16.4 4.6 1 23 598 620 598 620 0.98

12 14 1.3e-06 0.00014 22.5 0.8 1 23 626 648 626 648 0.98

13 14 8.1e-05 0.0086 16.8 0.2 1 23 652 674 652 674 0.99

14 14 0.00035 0.037 14.8 0.2 1 23 682 704 682 704 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.019	2	9.4	0.2	6	21	12	27	6	28	0.86
2	14	3.6	3.8e+02	2.2	0.0	2	20	34	52	33	54	0.91
3	14	0.83	88	4.2	0.4	1	12	236	247	236	256	0.89
4	14	0.012	1.3	10.0	3.1	1	23	366	388	366	388	0.97
5	14	0.0002	0.021	15.6	0.2	2	23	392	413	392	413	0.97
6	14	0.001	0.11	13.4	4.9	1	23	424	446	424	446	0.97
7	14	0.031	3.3	8.7	0.1	1	23	465	486	465	486	0.76
8	14	0.00059	0.062	14.1	0.1	2	23	492	513	491	513	0.95
9	14	4.3e-05	0.0045	17.7	4.8	1	23	542	564	542	564	0.99
10	14	1.8e-06	0.00019	22.0	3.7	1	23	570	592	570	592	0.96
11	14	0.00011	0.012	16.4	4.6	1	23	598	620	598	620	0.98
12	14	1.3e-06	0.00014	22.5	0.8	1	23	626	648	626	648	0.98
13	14	8.1e-05	0.0086	16.8	0.2	1	23	652	674	652	674	0.99
14	14	0.00035	0.037	14.8	0.2	1	23	682	704	682	704	0.97

Sequence Information

Coding Sequence: ATGGGCTCGTTGAATCTCATTTGCCCGATGTGCTGCGGCGAAACGTTTAACAATCCACAGTCATTAAAGTATCATTTATTAAGCATGACGGACAACCTATATTGTCCTAGTTGTTCGCAGCGATCTGACTCAGTAACGGCACTCATTCAACATTTGGATCGATGTGGACAAAGCGTTGAATCAGAGGCATCATCTGAATCAAAGTATGAGCCTAAGGAAGAAACTCAACAAGAATCTCAACCGGACACAGAAGTGCTAATGGACACAAATGTCGAAGGGATAGATCAAAGTTTTCTAGCAACTGTAAATGATAGTGGAATTATGATAGTTGGAGGACCTCAAACTATACAAGTTGATGAAAATGGAGATATTAAAGTCGTAGAAAAGATGGAAACTGAAGAGACACAAATGGAGCAAAATTCTCTGGAATTTAAGATTACAGAAAAAGTTCCTAATATCACAAGCAAAGCAGAAGAGAAATCTTTATCTCAAGATCAACTAGTAACAATTTCAACCACTTCAGAGACAGATGATAAAAACAGAAATAAAAATGTAATTACTATTTTACCTGATGGGTCAGAACTTTTAGATGGAGAAACTGGCGCTCTGATAAATATGGATCATATAAATGATGTAGGTGAATTAGATGAAGATGGACTTCTACATGTTAAACAAGAACTTTGTGAGATAGAACCAGAAGCAGTTTATAGTTGTACTAGTTGTGATATGAGCTTTAATTCTGTTGTGGAACATATAAAACAATTTCATGATGGACAAGAAGTATTACTTGAAATAGCTGATCAGTTAGATGATATACCTACAGTACCTGCAACTAACACCTTACATTCAGAATCAGGAAATGTAATCAATACTAGACAAAGACAGAGTATGAATACTCTGCGTACAGAAGAGTGTGTAGACAGTGAAGGAAGATTATATACAAGAAAAGTAGTACAAATAGAAAGATTCTGGGATAGAACTCCAGCACAAACATCACTTCAATCTACTAAAGCACCAATGATTGAAAAGTTCTTTTCTAATGTAGAAGGAGTGAAAGTACGAGAAAAAAGATTAGCTGCAACACCAATGAGAATGTATAGATGTAATCAGTGCCTTCAGCAGTTCTCCAAATTAGGAAACTTCCGAGTGCATGCATGTCTTCACGGCAATAATCGTTGCGATAGTTGTGACCAAACTTTCGCAACACCGAAAGCATTACAACTACATGCAAAGGTACACGAAGGTGAACCTGATCCAAATCAAAAAACTTTCATATGCGAAACTTGTGGTACAGAATTTTGTTCGCACAAAAGCTTGCGCTTGCATTCTCGAATGCACGCGCCGGTCAGAGCAAGGCACGTTGATGCACCTGAAGGAACACCTAATGCAACATTTACGTGTCCCGAGTGTGGTAAAACGTTAGCGGAATCATACAAAGAAGCACACATGGCATTACATTCTGGTGACTCTGTAACTTGTACTGTATGCAATAGAAAATTCGATTCTGCTGATAGTTTAGCAATGCATGCCGCAGTACATACAGAACTAAGCCAACCACATTCGCCAACACCACCTACTACTGAAACAGCTACAACTGCCGAACCCACAGAAAATCAAAAGCCTTATCAGTGTCAACATTGTGGTCGAAGATTTACAAGACCTCACGAGAAAGTGAAACACGAACGTATTCATACCGGAGAAAAGCCACACGCATGTGAAGTTTGCGGTAAAACTTTTCGTGTTTCTTATTGTCTGACTTTACACATGAGAACTCACACTGGTGTCAGACCATATGAATGCCAACATTGTGGTAAAAGATTTAAAGCTTCTTCTGTGTACAATCATCATTTACTTACACACGGGGAAGAACGTGCTTACACGTGCCCTTATTGCCCAAAAACTTTCAAAACACGTGTTCAATTAGCAGGACACAAAAACAGCCACACTAAACCATTTCGATGTACTGAGTGTTCCCGTCCATTTGCTTCCTTGTACGCCGCACGTGCTCATATACAAACTCACAAAAAAGACAATAATCTAAAATTCAGTTGTTATATTTGTGGTGCATCCTATGGTAGAGCATTTGCATTGAAAGATCATTTGAAACAACATGGTCAAGATGTGATAGCTCCACCGGAGCCGGTAAGAGAAGAAGAAATTCATGAAGGAGAAGATTTTTTACTTGCAGAAGAAGAGGTTGAGGATGATGAACTAGTTATTCCGTCACCGTTACCCGTTGCGCAATCATCAGAAGCTGATGACACAGAATGA
Protein Sequence: MGSLNLICPMCCGETFNNPQSLKYHLLSMTDNLYCPSCSQRSDSVTALIQHLDRCGQSVESEASSESKYEPKEETQQESQPDTEVLMDTNVEGIDQSFLATVNDSGIMIVGGPQTIQVDENGDIKVVEKMETEETQMEQNSLEFKITEKVPNITSKAEEKSLSQDQLVTISTTSETDDKNRNKNVITILPDGSELLDGETGALINMDHINDVGELDEDGLLHVKQELCEIEPEAVYSCTSCDMSFNSVVEHIKQFHDGQEVLLEIADQLDDIPTVPATNTLHSESGNVINTRQRQSMNTLRTEECVDSEGRLYTRKVVQIERFWDRTPAQTSLQSTKAPMIEKFFSNVEGVKVREKRLAATPMRMYRCNQCLQQFSKLGNFRVHACLHGNNRCDSCDQTFATPKALQLHAKVHEGEPDPNQKTFICETCGTEFCSHKSLRLHSRMHAPVRARHVDAPEGTPNATFTCPECGKTLAESYKEAHMALHSGDSVTCTVCNRKFDSADSLAMHAAVHTELSQPHSPTPPTTETATTAEPTENQKPYQCQHCGRRFTRPHEKVKHERIHTGEKPHACEVCGKTFRVSYCLTLHMRTHTGVRPYECQHCGKRFKASSVYNHHLLTHGEERAYTCPYCPKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAARAHIQTHKKDNNLKFSCYICGASYGRAFALKDHLKQHGQDVIAPPEPVREEEIHEGEDFLLAEEEVEDDELVIPSPLPVAQSSEADDTE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00625657;
90% Identity: iTF_00226756;
80% Identity: -