Basic Information

Insect: Bombus pascuorum
Gene Symbol: -
Assembly: GCA_905332965.1
Location: HG995274.1:8475864-8480832[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 1.7e-06 0.00018 22.1 1.7 1 23 143 165 143 165 0.98

2 9 1.6e-08 1.7e-06 28.4 1.6 3 23 173 193 171 193 0.98

3 9 0.00013 0.013 16.2 0.4 1 23 199 221 199 221 0.98

4 9 7e-07 7.4e-05 23.3 1.5 1 23 227 249 227 249 0.99

5 9 1.2e-05 0.0013 19.4 1.7 2 23 363 384 362 384 0.96

6 9 1.6e-09 1.7e-07 31.6 1.6 1 23 390 412 390 412 0.98

7 9 0.00036 0.038 14.8 0.6 3 23 420 440 418 440 0.97

8 9 4.7e-05 0.005 17.5 1.4 1 23 446 468 446 468 0.99

9 9 0.011 1.1 10.2 0.8 1 23 474 498 474 498 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	1.7e-06	0.00018	22.1	1.7	1	23	143	165	143	165	0.98
2	9	1.6e-08	1.7e-06	28.4	1.6	3	23	173	193	171	193	0.98
3	9	0.00013	0.013	16.2	0.4	1	23	199	221	199	221	0.98
4	9	7e-07	7.4e-05	23.3	1.5	1	23	227	249	227	249	0.99
5	9	1.2e-05	0.0013	19.4	1.7	2	23	363	384	362	384	0.96
6	9	1.6e-09	1.7e-07	31.6	1.6	1	23	390	412	390	412	0.98
7	9	0.00036	0.038	14.8	0.6	3	23	420	440	418	440	0.97
8	9	4.7e-05	0.005	17.5	1.4	1	23	446	468	446	468	0.99
9	9	0.011	1.1	10.2	0.8	1	23	474	498	474	498	0.95

Sequence Information

Coding Sequence: ATGGAGAGACCCCAGGGGCAATGGGGCCCCGGGCCGGGATCTCTCCAGGACGGGGGACTGTACCCGCAGCAACAGCAACAACAGCAACAGCAGGGCTCCTCCTCGTCCGGCAGTCCACAGCAGGCCTGTGGTCCTCCTGTCGAGGGAGAAAGCGGTCCCCCGCCTTCGTTGGCCTCTCCCGATGCCAGGCCGCATCCGTCGCCGTCGGTACCCCCGCACATGCTCACCCCCGGTGGCTTCTCCGCGTTACACTATCTCAAGCAACCAGGCGTCATGCTGACGTCCCTCGGCCAGGGTGACGGCGGACCCAGTTTGGATGCTCACCAATATGCAAGTCCCGGGGCGCCGAACATGGCGACTGGGTTGCCGGATATCGTGCAACAGAGCGGCAAGTCCGGGAAAGGGGCGAACAGCGATCTACGTTTGTTCAAGTGTCTGACGTGCGGGAAAGATTTTAAGCAGAAGTCGACGCTGCTTCAACACGAGCGGATCCATACGGACAGTCGGCCATACGGGTGTCCAGAATGCGGGAAGCGGTTCAGGCAACAATCGCATCTAACGCAGCACCTGCGCATACACGCGAACGAGAAGCCGTATGCTTGCGTGTACTGCGAGCGTACGTTCCGGCAGCGTGCGATCCTCAACCAGCATCTGCGCATCCACTCGGGTGAGAAGCCATACCAATGTCCGGAGTGCGGAAAACACTTCCGTCAGAAGGCGATCCTGAATCAGCACGTCCGCACACACCAAGACGTGAGTCCGCATCTGATCTTCAAGAATGGAATGACGCCAACACTCTGGCCGCAGGATGTTCCATTTCCACCGGAGGAGGGCAAGGAGGAGGTGGCATCGACGTTCGGCGACACGGACACACAGTCGGGCGCGTTCAGTCCGGCGCCGGACGCGAATTCCATCCAGTATCCTGCTTACTTCAAGGACCCGAAGGGCGGGAATCACGCGGTTTTCGGTGCCGGCGGCGCAGGTAGCTTCGGTGCTCTGCAGTATATCAAGCAACAGGGCGGTAGTAAGAGCTGTTTACCGGACGTGATACAGCACGGTCGCTCCGCGGGGATGCCGTTGTACGTACGATGTCCGATCTGTCAGAAGGAATTCAAGCAAAAATCGACGCTGCTGCAGCACGGCTGCATACACATCGAATCGCGACCGTATCCTTGCCCGGAGTGCGGCAAAAGGTTCAGGCAACAATCGCACTTGACCCAACACCTTCGCATTCACACGAACGAAAAGCCGTACGGCTGCGTTTATTGCGGCCGCAATTTCCGTCAACGTACCATCTTGAATCAACATTTGCGCATTCATACCGGCGAGAAGCCGTACAAGTGTCAACAGTGCGGCAAAGATTTCCGTCAGAAGGCGATACTGGATCAGCACACGCGCACCCATCAGGGTGACCGGCCGTTTTGCTGTCCGATGCCAAACTGTAGGCGGCGTTTCGCCACCGAGCCAGAGGTGAAGAAGCACATCGACAACCATATGAATCCGCACGCGGCCAAGGTGCGTAGGAACTCGAGCAGCGACTCGAAACCACCCGGTACACCGGCTGGTTTAGGCCCTGTCCCTGTACCTAGAGGTCTTACGCCAACGGTGGTGAAGCCGGAGCTCTATTTCCCGCAATGTTACGCGCCCGCGTTCAATCATCAACCGCCAGTGTCGACGGCGCAGTTCCCGGCCCAGGCAAACGGAGTATCCGTTGCCGGCGAATTCAAACCACCGACCGGTCTGCCGCCGCAGTGA
Protein Sequence: MERPQGQWGPGPGSLQDGGLYPQQQQQQQQQGSSSSGSPQQACGPPVEGESGPPPSLASPDARPHPSPSVPPHMLTPGGFSALHYLKQPGVMLTSLGQGDGGPSLDAHQYASPGAPNMATGLPDIVQQSGKSGKGANSDLRLFKCLTCGKDFKQKSTLLQHERIHTDSRPYGCPECGKRFRQQSHLTQHLRIHANEKPYACVYCERTFRQRAILNQHLRIHSGEKPYQCPECGKHFRQKAILNQHVRTHQDVSPHLIFKNGMTPTLWPQDVPFPPEEGKEEVASTFGDTDTQSGAFSPAPDANSIQYPAYFKDPKGGNHAVFGAGGAGSFGALQYIKQQGGSKSCLPDVIQHGRSAGMPLYVRCPICQKEFKQKSTLLQHGCIHIESRPYPCPECGKRFRQQSHLTQHLRIHTNEKPYGCVYCGRNFRQRTILNQHLRIHTGEKPYKCQQCGKDFRQKAILDQHTRTHQGDRPFCCPMPNCRRRFATEPEVKKHIDNHMNPHAAKVRRNSSSDSKPPGTPAGLGPVPVPRGLTPTVVKPELYFPQCYAPAFNHQPPVSTAQFPAQANGVSVAGEFKPPTGLPPQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00899019;
90% Identity: iTF_00227425;
80% Identity: iTF_00227425;