Basic Information

Insect: Bombus opulentus
Gene Symbol: -
Assembly: GCA_034509555.1
Location: CM067416.1:982284-984965[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0044 0.35 11.6 0.6 1 23 464 487 464 487 0.96

2 9 4.7e-06 0.00037 20.9 0.8 1 23 493 515 493 515 0.99

3 9 1.7e-07 1.3e-05 25.5 0.3 1 23 521 543 521 543 0.99

4 9 0.015 1.2 9.9 0.6 1 23 549 571 549 571 0.99

5 9 3.8e-06 0.0003 21.2 0.2 1 20 577 596 577 597 0.96

6 9 0.63 50 4.8 2.4 3 23 608 626 606 626 0.90

7 9 1.9e-06 0.00015 22.2 0.5 3 23 634 654 633 654 0.98

8 9 0.00019 0.015 15.9 1.4 1 23 660 682 660 682 0.98

9 9 0.0036 0.28 11.8 2.6 1 21 688 708 688 711 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0044	0.35	11.6	0.6	1	23	464	487	464	487	0.96
2	9	4.7e-06	0.00037	20.9	0.8	1	23	493	515	493	515	0.99
3	9	1.7e-07	1.3e-05	25.5	0.3	1	23	521	543	521	543	0.99
4	9	0.015	1.2	9.9	0.6	1	23	549	571	549	571	0.99
5	9	3.8e-06	0.0003	21.2	0.2	1	20	577	596	577	597	0.96
6	9	0.63	50	4.8	2.4	3	23	608	626	606	626	0.90
7	9	1.9e-06	0.00015	22.2	0.5	3	23	634	654	633	654	0.98
8	9	0.00019	0.015	15.9	1.4	1	23	660	682	660	682	0.98
9	9	0.0036	0.28	11.8	2.6	1	21	688	708	688	711	0.96

Sequence Information

Coding Sequence: atggTCAAAGTCGATATGCAACAAAACGTTTTAAGTCAAGTAGATGGAAGCGAACAACCGCAACAAGAGGAAGTTCAGCTGACCGAATTATTACCAGTGAAGCAATCGCGAATAAGGgagaatggaatttttaaacatatgaACACAAAAACTGATGCGACCGATGCTTTCAAGATACTCCGAAGTTTCACAACTGCCTATAGTTGCTATAACAACGATGAACATGAACTTTGCTCGCGAAATTTGTCTCTTTGCCgaaaaatcgaacaaattGAACAAGAGAAACAAGAGAAGGATAAACAGTGGCGAGAAGATAAACTGCGAAAGGGAATTGCTGAGTACGATAAACAAGTGATCGATAGCACCGAaatcagaaaagaaaaagaaagaaacaatgtTCAAAGATTCGAAACTGAATCGAGGACAAAGAACAGAAAATACAaacatttcgataaaaaatcgATGATTGGTTGTATAGTAAAATCtacgaagaaaagaacgatCGTTCATACGGTAGAAAATACTAAAGATCAAAGAGACGAAGGAAATGGCGACGATGGGATGAAACACCGTTATAAATTAGGAGAAAACGCATTTCTCGAAAATGAGAGGGGAAATTTCTTATCGGAGAATAAGGAACAGATAGAGTCAACGATTTATTTGGATTTAGACAAGAATAGTGAGTTAAATGATGACGTTTACATGTTTCGTCGTGAGTTGATAGATGGGGAACAAGGACGGAAGGTAAACTTAAGAAACGTGGAAGAAACATACGAAAACGAGAAGTCTGCGAAGACTACCGATGGAACGTTATTCAATCGAATAGCGATTCCTTGTGGGACatcgattgaaaataacaTTGATGTAGCAGAAAAACGATTTATTACCACTGCTGAGAAAAATGGCATATTTGATACGAAAGTATTAAACCCAAAATTGTTACTGGAAGATTCGACAAACGTATCAAATTGCAAAACGTTTCATATAACAACGATGAGTTACCTTGCGGAgaataaagttaataataataaggttCAAGATGAAGAGAATCCTACGAATCCATTATTCAGACCAGAAGCCTCCACCAGTATAGTGGCTACCAAATCGACGTCGTCAACGACAATATCAACATCAACGTCATCgtcatcatcgtcgtcgtcatcgtcgtcatcgtcgtcgtcgtcgtcgtcatcgtcgtcgtcgtcgtcgtcgtcgtcatcgccATCGTCTTCGTTGTCGtcatcgttgtcgtcgtcATTGTTGTCATCATCAACGCCGCCATCGTATTCGAAGGAAGAGAATACAAACGGCAGCGAGCGCGACCGCGGCAAGGATCAAAATACCGCTTTGCACGGTATGAAAACTAAACAAGAGAATCagcaaaaaaaatattgttgcgTAGTGTGCGAGGCGCGATTTAAAGGTAGTGGAGGTCTTCGTAACCACTATAAGATCATACACGGTGCGGGACCAACCTTCAAGTGTAACGATTGTGGGAAAGAGTTCCctttaaaagaaagattaaaactGCACGTAAGAACACATACTGGCTTCAAGCCATATAAATGTCCAGAATGCGACAAGAGTTTCGCCAGAGGAGGACAACTGGTGCAGCATCGACGTACTCACAGTCAGATAAAACCGTACCGTTGCGGTTTGTGTTCTGGCTCGTTCACCTGCGCTGCGAATTTGGCGTTACATATAAAACGACACAAAGGACAAAAGGATCACAAGTGTGAAATCTGTGGTCGTGCATTCGTTCGACGAGACGCTCTCAAGAAACATTTAGAATGTCTTCACAGAGACGTTAAATCTTTTCTCTGTATAATCTGCAACAAGACGTTCAAGGGCCACCTACCTCAACACATGAGAACGCATGCACGTGATCGGCCACACGGTTGTGCCACATGTGGTCAAAGATTTGCTCAAAAATCTCAATTGACTGTCCACCAGAGAACGCATTCTGGACAAAGACCGTTTAGGTGTTTGGTTTGCTGGCAGGCATTTGCGCACTCGACGGCACTTAAACTTCACACAAGAAGACACACTGGCGAAAGACCCTTCAAGTGTGCCGAATGTAACGCTGGTTTCACGCAACTACCCCATTGGAAAAAACACATGAAATGTATCCATGGCAGAAATGAGCCGTACGCTTGCAAAAAGTGTACGAGTTTCttcagaattaaaaatgatctGGAATGTCACGAAAGAGCTTGTCATCCTGAATCCGAGACTGAACACGACGTTCCGAGTACTCAAACCTCAGATTTAATCACAAACACGATCATGCCAACATCTATTTCCATGGCTTTACAACCGACAGCGACCCTGCTTTCCAATGAAATAAACAGCGATAAATCCTCGCCATCGCCCTccaaatatagaataatgaCTGTCGAGAGGATGAGATTGTTGCTCGCTGTACTTCTTAAAAGAATCAGCAAGCAAGAAAGACTGGACGAACTAGGCTTTGGTAAACGACTGATCGACCAAGTTCTTTACGATTCTCTGATATCCGCTGGCAAAGATCCAGTGGCAAACAACGGTTTATCCGAACTTGAAACACTCACCAAGAATCTCGAGATATTCCTCAAATGGACTGTACCTAAAGAACATTGGGAACATTTTCGCAAATTGAATAAAACTCCCGAAGATATTTTGGAAACACTGACTGCTACTTAA
Protein Sequence: MVKVDMQQNVLSQVDGSEQPQQEEVQLTELLPVKQSRIRENGIFKHMNTKTDATDAFKILRSFTTAYSCYNNDEHELCSRNLSLCRKIEQIEQEKQEKDKQWREDKLRKGIAEYDKQVIDSTEIRKEKERNNVQRFETESRTKNRKYKHFDKKSMIGCIVKSTKKRTIVHTVENTKDQRDEGNGDDGMKHRYKLGENAFLENERGNFLSENKEQIESTIYLDLDKNSELNDDVYMFRRELIDGEQGRKVNLRNVEETYENEKSAKTTDGTLFNRIAIPCGTSIENNIDVAEKRFITTAEKNGIFDTKVLNPKLLLEDSTNVSNCKTFHITTMSYLAENKVNNNKVQDEENPTNPLFRPEASTSIVATKSTSSTTISTSTSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSSSLSSSLSSSLLSSSTPPSYSKEENTNGSERDRGKDQNTALHGMKTKQENQQKKYCCVVCEARFKGSGGLRNHYKIIHGAGPTFKCNDCGKEFPLKERLKLHVRTHTGFKPYKCPECDKSFARGGQLVQHRRTHSQIKPYRCGLCSGSFTCAANLALHIKRHKGQKDHKCEICGRAFVRRDALKKHLECLHRDVKSFLCIICNKTFKGHLPQHMRTHARDRPHGCATCGQRFAQKSQLTVHQRTHSGQRPFRCLVCWQAFAHSTALKLHTRRHTGERPFKCAECNAGFTQLPHWKKHMKCIHGRNEPYACKKCTSFFRIKNDLECHERACHPESETEHDVPSTQTSDLITNTIMPTSISMALQPTATLLSNEINSDKSSPSPSKYRIMTVERMRLLLAVLLKRISKQERLDELGFGKRLIDQVLYDSLISAGKDPVANNGLSELETLTKNLEIFLKWTVPKEHWEHFRKLNKTPEDILETLTAT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00227468;
90% Identity: iTF_00222711;
80% Identity: -