Basic Information

Insect: Bombus opulentus
Gene Symbol: -
Assembly: GCA_034509555.1
Location: CM067421.1:5252023-5254756[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.022 1.7 9.4 0.2 6 21 12 27 6 28 0.86

2 14 9.1 7.2e+02 1.1 0.0 2 20 34 52 33 54 0.89

3 14 0.97 76 4.2 0.4 1 12 235 246 235 255 0.89

4 14 0.014 1.1 10.0 3.1 1 23 365 387 365 387 0.97

5 14 0.00024 0.019 15.6 0.2 2 23 391 412 391 412 0.97

6 14 0.0012 0.092 13.4 4.9 1 23 423 445 423 445 0.97

7 14 0.036 2.9 8.7 0.1 1 23 464 485 464 485 0.76

8 14 0.00069 0.054 14.1 0.1 2 23 491 512 490 512 0.95

9 14 5e-05 0.0039 17.7 4.8 1 23 541 563 541 563 0.99

10 14 2.2e-06 0.00017 22.0 3.7 1 23 569 591 569 591 0.96

11 14 0.00025 0.02 15.5 4.1 1 23 597 619 597 619 0.97

12 14 1.5e-06 0.00012 22.5 0.8 1 23 625 647 625 647 0.98

13 14 9.5e-05 0.0075 16.8 0.2 1 23 651 673 651 673 0.99

14 14 0.00041 0.032 14.8 0.2 1 23 681 703 681 703 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.022	1.7	9.4	0.2	6	21	12	27	6	28	0.86
2	14	9.1	7.2e+02	1.1	0.0	2	20	34	52	33	54	0.89
3	14	0.97	76	4.2	0.4	1	12	235	246	235	255	0.89
4	14	0.014	1.1	10.0	3.1	1	23	365	387	365	387	0.97
5	14	0.00024	0.019	15.6	0.2	2	23	391	412	391	412	0.97
6	14	0.0012	0.092	13.4	4.9	1	23	423	445	423	445	0.97
7	14	0.036	2.9	8.7	0.1	1	23	464	485	464	485	0.76
8	14	0.00069	0.054	14.1	0.1	2	23	491	512	490	512	0.95
9	14	5e-05	0.0039	17.7	4.8	1	23	541	563	541	563	0.99
10	14	2.2e-06	0.00017	22.0	3.7	1	23	569	591	569	591	0.96
11	14	0.00025	0.02	15.5	4.1	1	23	597	619	597	619	0.97
12	14	1.5e-06	0.00012	22.5	0.8	1	23	625	647	625	647	0.98
13	14	9.5e-05	0.0075	16.8	0.2	1	23	651	673	651	673	0.99
14	14	0.00041	0.032	14.8	0.2	1	23	681	703	681	703	0.97

Sequence Information

Coding Sequence: atgggCTCGTTGAATCTCATTTGCCCGATGTGCTGTGGCGAAACGTTTAACAATCCACAGTCATTAAAGTACCATTTATTAAGCATGACGGACAACCTATATTGTCCTAGTTGTTCGCAGCGATCTGACTCAGTAATGGCACTCATTCAACATTTGGATCGATGTGGACAAAGCGTTGAACCAGAGGCATCGTCTGAATTAAAGTATGAGACTAAGGAAGAAACTCGAGAATCTCAACCGGACACAGAAGTGCTAATGgaCACAAATGTCGAAGGGATAGATCAAAGTTTTCTAGCAACTGTAAATGATAGTGGAATTATGATAGTTGGAGGACCTCAAACTATACAAGTTGATGAAAATGgaGATATTAAAGTCGTAGAAAAGATGGAAACTGAAGAGACACAAATGGAGCAAAATTCTCTGGAATTTAAGATTACAGAAAAAGTTCCTAATATCACAAGCAAAGCAGAAGAGAAATCTTTATCTCAAGATCAACTAGTAACAATTTCAACCACTTCAGAGACAGAtgataaaaacagaaataaaaatgtaattactaTTTTACCTGATGGGTCAGAACTTTTAGATGGAGAAACTAGCGCTCTGATAAATATGGATCATATAAATGATGTAGGTGAATTAGATGAAGATGGACTTCTACATGTTAAACAAGAACTTTGTGAGatagAACCAGAAGCAGTTTATAGTTGTACTAGTTGTGATATGAGCTTTAATTCTGTTGTGGaacatataaaacaatttcatgaTGGACAAGAAGTATTACTTGAAATAGCTGATCAGTTAGATGATATACCTACAGTACCTGCAACTAACACCTTACATTCAGAATCAGGAAATGTAATCAATACTAGACAAAGACAGAGTATGAATACTCTGCGTACAGAAGAGTGTGTAGACAGTGAAGGAAGATTATATACAAGAAAAGTAGTACAAATAGAAAGATTCTGGGATAGAACTCCAGCACAAACATCACTTCAATCTACTAAAGCACCAATGATTGAAAAGTTCTTTTCTAATGTAGAAGGAGTGAAAGTACGAGAAAAAAGATTAGCTGCAACACCAATGAGAATGTATAGATGTAATCAGTGCCTTCAGCAGTTCTCCAAATTAGGAAACTTCCGAGTGCATGCATGTCTTCACGGCAATAATCGTTGCGATAGTTGTGACCAAACTTTCGCAACACCGAAAGCATTACAACTACATGCAAAAGTACACGAAGGTGAACCTGATCCAAATCAAAAAACTTTCATATGCGAAACTTGTGGTACAGAATTTTGTTCGCACAAAAGCTTGCGCTTGCATTCTCGAATGCACGCGCCGGTCAGAGCAAGGCACGTTGATGCACCTGAAGGAACACCTAATGCAACATTTACGTGTCCCGAGTgtgGTAAAACGTTAGCGGAATCATACAAAGAAGCACACATGGCATTACATTCTGGTGACTCTGTAACTTGTACTGTATGCaatagaaaattcgattctGCTGATAGTTTAGCAATGCATGCCGCAGTACATACAGAACTAAGCCAACCACATTCGCCAACACCACCTACTACTGAAACAGCTACAACTGCCGAACCCACAGAAAGTCAAAAGCCTTATCAGTGTCAACATTGTGGTCGAAGATTTACAAGACCTCACGAGAAAGTGAAACACGAACGTATTCATACCGGAGAAAAGCCACACGCATGTGAAgTTTGCGGTAAAACTTTTCGTGTTTCTTATTGTCTGACTTTACACATGAGAACTCACACTGGTGTCAGACCATATGCATGCCAACATTGTGGTAAAAGATTTAAAGCTTCTTCTGTGTACAATCATCATTTACTTACACACGGGGAAGAACGTGCTTACACGTGCCCTTATTGCCCAAAAACTTTCAAAACACGTGTTCAATTAGCAGGACACAAAAACAGCCACACTAAACCATTTCGATGTACTGAGTGTTCCCGTCCATTTGCTTCCTTGTACGCCGCACGTGCTCATATACAAACTCACAAAAAAGACAATAATCTAAAATTCAGTTGTTATATTTGTGGTGCATCCTATGGTAGAGCATTTGCATTGAAAGATCATTTGAAACAACATGGTCAAGATGTGATAGCTCCACCGGAGCCAgtaagagaagaagaaattcatGAAGGAGAAGATTTTTTACTTGCAGAAGAAGAGGTTGAGGATGATGAACTAGTTATTCCGTCACCTTTACCCGTTGCGCAATCATCAGAAGCTGATGACACAGAATGA
Protein Sequence: MGSLNLICPMCCGETFNNPQSLKYHLLSMTDNLYCPSCSQRSDSVMALIQHLDRCGQSVEPEASSELKYETKEETRESQPDTEVLMDTNVEGIDQSFLATVNDSGIMIVGGPQTIQVDENGDIKVVEKMETEETQMEQNSLEFKITEKVPNITSKAEEKSLSQDQLVTISTTSETDDKNRNKNVITILPDGSELLDGETSALINMDHINDVGELDEDGLLHVKQELCEIEPEAVYSCTSCDMSFNSVVEHIKQFHDGQEVLLEIADQLDDIPTVPATNTLHSESGNVINTRQRQSMNTLRTEECVDSEGRLYTRKVVQIERFWDRTPAQTSLQSTKAPMIEKFFSNVEGVKVREKRLAATPMRMYRCNQCLQQFSKLGNFRVHACLHGNNRCDSCDQTFATPKALQLHAKVHEGEPDPNQKTFICETCGTEFCSHKSLRLHSRMHAPVRARHVDAPEGTPNATFTCPECGKTLAESYKEAHMALHSGDSVTCTVCNRKFDSADSLAMHAAVHTELSQPHSPTPPTTETATTAEPTESQKPYQCQHCGRRFTRPHEKVKHERIHTGEKPHACEVCGKTFRVSYCLTLHMRTHTGVRPYACQHCGKRFKASSVYNHHLLTHGEERAYTCPYCPKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAARAHIQTHKKDNNLKFSCYICGASYGRAFALKDHLKQHGQDVIAPPEPVREEEIHEGEDFLLAEEEVEDDELVIPSPLPVAQSSEADDTE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00625657;
90% Identity: iTF_00226756;
80% Identity: -